RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 KAT6AQ92794 2004 aa15.2■□□□□ 0.02
SDC1-201ENST00000254351 RPS6KA4O75676 772 aa15.2■□□□□ 0.02
SDC1-201ENST00000254351 ANXA13P27216 316 aa15.2■□□□□ 0.02
SDC1-201ENST00000254351 GCAP28676 217 aa15.2■□□□□ 0.02
SDC1-201ENST00000254351 PGM1P36871 562 aa15.2■□□□□ 0.02
SDC1-201ENST00000254351 GPS1Q13098 491 aa15.2■□□□□ 0.02
SDC1-201ENST00000254351 NR1H3Q13133 447 aa15.2■□□□□ 0.02
SDC1-201ENST00000254351 SLC27A3Q5K4L6 730 aa15.2■□□□□ 0.02
SDC1-201ENST00000254351 PPP1R18Q6NYC8 613 aa15.2■□□□□ 0.02
SDC1-201ENST00000254351 FOXR2Q6PJQ5 311 aa15.2■□□□□ 0.02
SDC1-201ENST00000254351 DRAXINQ8NBI3 349 aaPredicted RBP15.2■□□□□ 0.02
SDC1-201ENST00000254351 CCDC195A0A1B0GUA6 201 aa15.2■□□□□ 0.02
SDC1-201ENST00000254351 DYNLT1P63172 113 aa15.2■□□□□ 0.02
SDC1-201ENST00000254351 CCDC15Q0P6D6 951 aa15.2■□□□□ 0.02
SDC1-201ENST00000254351 RASA3Q14644 834 aa15.2■□□□□ 0.02
SDC1-201ENST00000254351 LMBRD2Q68DH5 695 aaPredicted RBP15.2■□□□□ 0.02
SDC1-201ENST00000254351 BTBD10Q9BSF8 475 aa15.2■□□□□ 0.02
SDC1-201ENST00000254351 KRT82Q9NSB4 513 aa15.2■□□□□ 0.02
SDC1-201ENST00000254351 WRAP73Q9P2S5 460 aaPredicted RBP15.2■□□□□ 0.02
SDC1-201ENST00000254351 LRP5O75197 1615 aa15.2■□□□□ 0.02
SDC1-201ENST00000254351 MEIS2O14770 477 aa15.19■□□□□ 0.02
SDC1-201ENST00000254351 CCDC22O60826 627 aa15.19■□□□□ 0.02
SDC1-201ENST00000254351 CFBP00751 764 aa15.19■□□□□ 0.02
SDC1-201ENST00000254351 RTP1P59025 263 aa15.19■□□□□ 0.02
SDC1-201ENST00000254351 FMO1Q01740 532 aa15.19■□□□□ 0.02
SDC1-201ENST00000254351 PDIA2Q13087 525 aaKnown RBP15.19■□□□□ 0.02
SDC1-201ENST00000254351 ZYXQ15942 572 aaKnown RBP15.19■□□□□ 0.02
SDC1-201ENST00000254351 ZNF568Q3ZCX4 644 aa15.19■□□□□ 0.02
SDC1-201ENST00000254351 EFCAB3Q8N7B9 438 aa15.19■□□□□ 0.02
SDC1-201ENST00000254351 ATL2Q8NHH9 583 aa15.19■□□□□ 0.02
SDC1-201ENST00000254351 TCP10LQ8TDR4 215 aa15.19■□□□□ 0.02
SDC1-201ENST00000254351 ZNF395Q9H8N7 513 aaPredicted RBP15.19■□□□□ 0.02
SDC1-201ENST00000254351 DDX4Q9NQI0 724 aaKnown RBP15.19■□□□□ 0.02
SDC1-201ENST00000254351 TAS2R1Q9NYW7 299 aa15.19■□□□□ 0.02
SDC1-201ENST00000254351 FRMPD4Q14CM0 1322 aa15.19■□□□□ 0.02
SDC1-201ENST00000254351 FAM237BA0A1B0GVD1 139 aa15.19■□□□□ 0.02
SDC1-201ENST00000254351 GTPBP10A4D1E9 387 aaKnown RBP15.19■□□□□ 0.02
SDC1-201ENST00000254351 SIGLEC16A6NMB1 481 aa15.19■□□□□ 0.02
SDC1-201ENST00000254351 GNPATO15228 680 aa15.19■□□□□ 0.02
SDC1-201ENST00000254351 UFL1O94874 794 aa15.19■□□□□ 0.02
SDC1-201ENST00000254351 TROVE2P10155 538 aaKnown RBP eCLIP15.19■□□□□ 0.02
SDC1-201ENST00000254351 VAMP7P51809 220 aa15.19■□□□□ 0.02
SDC1-201ENST00000254351 CETN1Q12798 172 aa15.19■□□□□ 0.02
SDC1-201ENST00000254351 STAT4Q14765 748 aa15.19■□□□□ 0.02
SDC1-201ENST00000254351 PDK4Q16654 411 aa15.19■□□□□ 0.02
SDC1-201ENST00000254351 CYP1B1Q16678 543 aa15.19■□□□□ 0.02
SDC1-201ENST00000254351 CNPY1Q3B7I2 92 aa15.19■□□□□ 0.02
SDC1-201ENST00000254351 WDR72Q3MJ13 1102 aa15.19■□□□□ 0.02
SDC1-201ENST00000254351 ZNF720Q7Z2F6 126 aa15.19■□□□□ 0.02
SDC1-201ENST00000254351 FAM81AQ8TBF8 368 aa15.19■□□□□ 0.02
SDC1-201ENST00000254351 SH3TC2Q8TF17 1288 aa15.19■□□□□ 0.02
SDC1-201ENST00000254351 PSPC1Q8WXF1 523 aaKnown RBP15.19■□□□□ 0.02
SDC1-201ENST00000254351 USP6NLQ92738 828 aa15.19■□□□□ 0.02
SDC1-201ENST00000254351 KREMEN1Q96MU8 473 aa15.19■□□□□ 0.02
SDC1-201ENST00000254351 THTPAQ9BU02 230 aa15.19■□□□□ 0.02
SDC1-201ENST00000254351 SMYD3Q9H7B4 428 aa15.19■□□□□ 0.02
SDC1-201ENST00000254351 TMEM165Q9HC07 324 aa15.19■□□□□ 0.02
SDC1-201ENST00000254351 KANSL3Q9P2N6 904 aa15.19■□□□□ 0.02
SDC1-201ENST00000254351 DLEC1Q9Y238 1755 aa15.19■□□□□ 0.02
SDC1-201ENST00000254351 MEI4A8MW99 385 aa15.19■□□□□ 0.02
SDC1-201ENST00000254351 B2RBV5 119 aa15.19■□□□□ 0.02
SDC1-201ENST00000254351 ARSEP51690 589 aa15.19■□□□□ 0.02
SDC1-201ENST00000254351 ARFIP2P53365 341 aa15.19■□□□□ 0.02
SDC1-201ENST00000254351 LMO3Q8TAP4 145 aa15.19■□□□□ 0.02
SDC1-201ENST00000254351 PREBQ9HCU5 417 aa15.19■□□□□ 0.02
SDC1-201ENST00000254351 ETNK2Q9NVF9 386 aa15.19■□□□□ 0.02
SDC1-201ENST00000254351 ARAP2Q8WZ64 1704 aa15.18■□□□□ 0.02
SDC1-201ENST00000254351 OR6B1O95007 311 aa15.18■□□□□ 0.02
SDC1-201ENST00000254351 LYNP07948 512 aa15.18■□□□□ 0.02
SDC1-201ENST00000254351 TFDP1Q14186 410 aa15.18■□□□□ 0.02
SDC1-201ENST00000254351 CLUL1Q15846 466 aa15.18■□□□□ 0.02
SDC1-201ENST00000254351 OLFML2BQ68BL8 750 aa15.18■□□□□ 0.02
SDC1-201ENST00000254351 CCDC62Q6P9F0 684 aa15.18■□□□□ 0.02
SDC1-201ENST00000254351 TRIM74Q86UV6 250 aa15.18■□□□□ 0.02
SDC1-201ENST00000254351 TRIM73Q86UV7 250 aa15.18■□□□□ 0.02
SDC1-201ENST00000254351 SEMA4DQ92854 862 aa15.18■□□□□ 0.02
SDC1-201ENST00000254351 ZNF184Q99676 751 aaPredicted RBP15.18■□□□□ 0.02
SDC1-201ENST00000254351 TMEM120AQ9BXJ8 343 aa15.18■□□□□ 0.02
SDC1-201ENST00000254351 CLIC5Q9NZA1 410 aa15.18■□□□□ 0.02
SDC1-201ENST00000254351 ATF5Q9Y2D1 282 aaPredicted RBP15.18■□□□□ 0.02
SDC1-201ENST00000254351 UTRNP46939 3433 aa15.18■□□□□ 0.02
SDC1-201ENST00000254351 FSCN2O14926 492 aa15.18■□□□□ 0.02
SDC1-201ENST00000254351 GGPS1O95749 300 aa15.18■□□□□ 0.02
SDC1-201ENST00000254351 CYP11B1P15538 503 aa15.18■□□□□ 0.02
SDC1-201ENST00000254351 TCF4P15884 667 aa15.18■□□□□ 0.02
SDC1-201ENST00000254351 GTF2IP78347 998 aa15.18■□□□□ 0.02
SDC1-201ENST00000254351 PLEKHO2Q8TD55 490 aa15.18■□□□□ 0.02
SDC1-201ENST00000254351 CCDC124Q96CT7 223 aaKnown RBP15.18■□□□□ 0.02
SDC1-201ENST00000254351 KIFC3Q9BVG8 833 aa15.18■□□□□ 0.02
SDC1-201ENST00000254351 PLVAPQ9BX97 442 aa15.18■□□□□ 0.02
SDC1-201ENST00000254351 DNPEPQ9ULA0 475 aa15.18■□□□□ 0.02
SDC1-201ENST00000254351 MAGEA13PA6NCF6 341 aa15.17■□□□□ 0.02
SDC1-201ENST00000254351 E7ENQ6 273 aa15.17■□□□□ 0.02
SDC1-201ENST00000254351 RGL2O15211 777 aa15.17■□□□□ 0.02
SDC1-201ENST00000254351 HNRNPRO43390 633 aaKnown RBP15.17■□□□□ 0.02
SDC1-201ENST00000254351 SLITRK3O94933 977 aa15.17■□□□□ 0.02
SDC1-201ENST00000254351 EYA4O95677 639 aa15.17■□□□□ 0.02
SDC1-201ENST00000254351 MXI1P50539 228 aa15.17■□□□□ 0.02
SDC1-201ENST00000254351 RHBDL3P58872 404 aa15.17■□□□□ 0.02
SDC1-201ENST00000254351 PTK6Q13882 451 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms