RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 FIZ1Q96SL8 496 aa12.67□□□□□ -0.38
USHBP1-201ENST00000252597 DDX50Q9BQ39 737 aaKnown RBP12.67□□□□□ -0.38
USHBP1-201ENST00000252597 FBXO6Q9NRD1 293 aaPredicted RBP12.67□□□□□ -0.38
USHBP1-201ENST00000252597 SPATS2LQ9NUQ6 558 aaKnown RBP12.67□□□□□ -0.38
USHBP1-201ENST00000252597 SEL1LQ9UBV2 794 aa12.67□□□□□ -0.38
USHBP1-201ENST00000252597 NOCTQ9UK39 431 aaKnown RBP12.67□□□□□ -0.38
USHBP1-201ENST00000252597 ATP9AO75110 1047 aa12.66□□□□□ -0.38
USHBP1-201ENST00000252597 RASSF2P50749 326 aa12.66□□□□□ -0.38
USHBP1-201ENST00000252597 ZNF268Q14587 947 aaPredicted RBP12.66□□□□□ -0.38
USHBP1-201ENST00000252597 ZC3H3Q8IXZ2 948 aaKnown RBP12.66□□□□□ -0.38
USHBP1-201ENST00000252597 NLGN1Q8N2Q7 840 aa12.66□□□□□ -0.38
USHBP1-201ENST00000252597 CCHCR1Q8TD31 782 aa12.66□□□□□ -0.38
USHBP1-201ENST00000252597 FAXDC2Q96IV6 333 aa12.66□□□□□ -0.38
USHBP1-201ENST00000252597 CFAP57Q96MR6 1250 aa12.66□□□□□ -0.38
USHBP1-201ENST00000252597 MCEEQ96PE7 176 aa12.66□□□□□ -0.38
USHBP1-201ENST00000252597 CALN1Q9BXU9 219 aa12.66□□□□□ -0.38
USHBP1-201ENST00000252597 SLC13A1Q9BZW2 595 aa12.66□□□□□ -0.38
USHBP1-201ENST00000252597 CHKBQ9Y259 395 aa12.66□□□□□ -0.38
USHBP1-201ENST00000252597 FRMPD4Q14CM0 1322 aa12.66□□□□□ -0.38
USHBP1-201ENST00000252597 SMCHD1A6NHR9 2005 aa12.66□□□□□ -0.38
USHBP1-201ENST00000252597 GYG2O15488 501 aa12.66□□□□□ -0.38
USHBP1-201ENST00000252597 C21orf2O43822 256 aa12.66□□□□□ -0.38
USHBP1-201ENST00000252597 ECE2O60344 883 aa12.66□□□□□ -0.38
USHBP1-201ENST00000252597 UNC5CO95185 931 aa12.66□□□□□ -0.38
USHBP1-201ENST00000252597 UBTFL6P0CB48 400 aaPredicted RBP12.66□□□□□ -0.38
USHBP1-201ENST00000252597 GNA15P30679 374 aa12.66□□□□□ -0.38
USHBP1-201ENST00000252597 NT5C2P49902 561 aa12.66□□□□□ -0.38
USHBP1-201ENST00000252597 KDSRQ06136 332 aa12.66□□□□□ -0.38
USHBP1-201ENST00000252597 TFDP1Q14186 410 aa12.66□□□□□ -0.38
USHBP1-201ENST00000252597 FAXCQ5TGI0 409 aa12.66□□□□□ -0.38
USHBP1-201ENST00000252597 RFWD3Q6PCD5 774 aa12.66□□□□□ -0.38
USHBP1-201ENST00000252597 NLRP9Q7RTR0 991 aa12.66□□□□□ -0.38
USHBP1-201ENST00000252597 LRRC6Q86X45 466 aa12.66□□□□□ -0.38
USHBP1-201ENST00000252597 FAM71AQ8IYT1 594 aa12.66□□□□□ -0.38
USHBP1-201ENST00000252597 SLC25A41Q8N5S1 370 aa12.66□□□□□ -0.38
USHBP1-201ENST00000252597 CHURC1Q8WUH1 139 aa12.66□□□□□ -0.38
USHBP1-201ENST00000252597 TMEM143Q96AN5 459 aa12.66□□□□□ -0.38
USHBP1-201ENST00000252597 ZBTB45Q96K62 511 aaPredicted RBP12.66□□□□□ -0.38
USHBP1-201ENST00000252597 MAGEB18Q96M61 343 aa12.66□□□□□ -0.38
USHBP1-201ENST00000252597 RILPQ96NA2 401 aa12.66□□□□□ -0.38
USHBP1-201ENST00000252597 TTC1Q99614 292 aa12.66□□□□□ -0.38
USHBP1-201ENST00000252597 GABBR1Q9UBS5 961 aa12.66□□□□□ -0.38
USHBP1-201ENST00000252597 E2F8A0AVK6 867 aa12.65□□□□□ -0.38
USHBP1-201ENST00000252597 KRT19P08727 400 aa12.65□□□□□ -0.38
USHBP1-201ENST00000252597 ZCCHC18P0CG32 403 aa12.65□□□□□ -0.38
USHBP1-201ENST00000252597 RCN1Q15293 331 aa12.65□□□□□ -0.38
USHBP1-201ENST00000252597 TSNAXIP1Q2TAA8 658 aa12.65□□□□□ -0.38
USHBP1-201ENST00000252597 BSPRYQ5W0U4 402 aa12.65□□□□□ -0.38
USHBP1-201ENST00000252597 MFSD7Q6UXD7 560 aa12.65□□□□□ -0.38
USHBP1-201ENST00000252597 CCDC125Q86Z20 511 aa12.65□□□□□ -0.38
USHBP1-201ENST00000252597 CFAP61Q8NHU2 1237 aa12.65□□□□□ -0.38
USHBP1-201ENST00000252597 ZNF526Q8TF50 670 aaPredicted RBP12.65□□□□□ -0.38
USHBP1-201ENST00000252597 ZNF341Q9BYN7 854 aa12.65□□□□□ -0.38
USHBP1-201ENST00000252597 TMEM39BQ9GZU3 492 aa12.65□□□□□ -0.38
USHBP1-201ENST00000252597 KIAA1586Q9HCI6 787 aa12.65□□□□□ -0.38
USHBP1-201ENST00000252597 STK32BQ9NY57 414 aa12.65□□□□□ -0.38
USHBP1-201ENST00000252597 HEY2Q9UBP5 337 aa12.65□□□□□ -0.38
USHBP1-201ENST00000252597 NXF1Q9UBU9 619 aaKnown RBP12.65□□□□□ -0.38
USHBP1-201ENST00000252597 CHMP2BQ9UQN3 213 aa12.65□□□□□ -0.38
USHBP1-201ENST00000252597 CCDC88AQ3V6T2 1871 aa12.65□□□□□ -0.38
USHBP1-201ENST00000252597 F8VP50 259 aa12.65□□□□□ -0.38
USHBP1-201ENST00000252597 AP1G2O75843 785 aa12.65□□□□□ -0.38
USHBP1-201ENST00000252597 TROVE2P10155 538 aaKnown RBP eCLIP12.65□□□□□ -0.38
USHBP1-201ENST00000252597 NPTX2P47972 431 aa12.65□□□□□ -0.38
USHBP1-201ENST00000252597 CGB2Q6NT52 195 aa12.65□□□□□ -0.38
USHBP1-201ENST00000252597 SWSAP1Q6NVH7 229 aa12.65□□□□□ -0.38
USHBP1-201ENST00000252597 FOXR2Q6PJQ5 311 aa12.65□□□□□ -0.38
USHBP1-201ENST00000252597 FAM13CQ8NE31 585 aa12.65□□□□□ -0.38
USHBP1-201ENST00000252597 OLIG1Q8TAK6 271 aa12.65□□□□□ -0.38
USHBP1-201ENST00000252597 TAAR1Q96RJ0 339 aa12.65□□□□□ -0.38
USHBP1-201ENST00000252597 PPP1R16BQ96T49 567 aa12.65□□□□□ -0.38
USHBP1-201ENST00000252597 DMAC2Q9NW81 257 aa12.65□□□□□ -0.38
USHBP1-201ENST00000252597 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.65□□□□□ -0.38
USHBP1-201ENST00000252597 WHRNQ9P202 907 aa12.65□□□□□ -0.38
USHBP1-201ENST00000252597 UVRAGQ9P2Y5 699 aa12.65□□□□□ -0.38
USHBP1-201ENST00000252597 USH1CQ9Y6N9 552 aa12.65□□□□□ -0.38
USHBP1-201ENST00000252597 CEP350Q5VT06 3117 aa12.65□□□□□ -0.38
USHBP1-201ENST00000252597 GGPS1O95749 300 aa12.65□□□□□ -0.38
USHBP1-201ENST00000252597 MTFR1Q15390 333 aa12.65□□□□□ -0.38
USHBP1-201ENST00000252597 TLDC1Q6P9B6 456 aa12.65□□□□□ -0.38
USHBP1-201ENST00000252597 C3orf62Q6ZUJ4 267 aa12.65□□□□□ -0.38
USHBP1-201ENST00000252597 RHOT1Q8IXI2 618 aa12.65□□□□□ -0.38
USHBP1-201ENST00000252597 MCOLN2Q8IZK6 566 aa12.65□□□□□ -0.38
USHBP1-201ENST00000252597 RSAD2Q8WXG1 361 aa12.65□□□□□ -0.38
USHBP1-201ENST00000252597 CFAP36Q96G28 342 aa12.65□□□□□ -0.38
USHBP1-201ENST00000252597 NENFQ9UMX5 172 aa12.65□□□□□ -0.38
USHBP1-201ENST00000252597 ADSSP30520 456 aa12.64□□□□□ -0.39
USHBP1-201ENST00000252597 RFC5P40937 340 aa12.64□□□□□ -0.39
USHBP1-201ENST00000252597 POLGP54098 1239 aaPredicted RBP12.64□□□□□ -0.39
USHBP1-201ENST00000252597 SIX1Q15475 284 aaPredicted RBP12.64□□□□□ -0.39
USHBP1-201ENST00000252597 C1orf220Q5T0J3 134 aa12.64□□□□□ -0.39
USHBP1-201ENST00000252597 ARHGEF16Q5VV41 709 aa12.64□□□□□ -0.39
USHBP1-201ENST00000252597 TXNRD3NBQ6F5E7 133 aa12.64□□□□□ -0.39
USHBP1-201ENST00000252597 ANKS1BQ7Z6G8 1248 aa12.64□□□□□ -0.39
USHBP1-201ENST00000252597 PPP1R14CQ8TAE6 165 aa12.64□□□□□ -0.39
USHBP1-201ENST00000252597 HSPH1Q92598 858 aa12.64□□□□□ -0.39
USHBP1-201ENST00000252597 L3MBTL3Q96JM7 780 aaPredicted RBP12.64□□□□□ -0.39
USHBP1-201ENST00000252597 TSC22D3Q99576 134 aa12.64□□□□□ -0.39
USHBP1-201ENST00000252597 MXRA8Q9BRK3 442 aa12.64□□□□□ -0.39
USHBP1-201ENST00000252597 COL20A1Q9P218 1284 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms