RNA–Protein interactions for RNA: ENST00000642041.1

PHGDH-234, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 943 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-234ENST00000642041 STAG3Q9UJ98 1225 aa25.46■■□□□ 1.67
PHGDH-234ENST00000642041 CLSPNQ9HAW4 1339 aa25.45■■□□□ 1.66
PHGDH-234ENST00000642041 CDK12Q9NYV4 1490 aaPredicted RBP25.45■■□□□ 1.66
PHGDH-234ENST00000642041 PIK3C2BO00750 1634 aa25.45■■□□□ 1.66
PHGDH-234ENST00000642041 NWD1Q149M9 1564 aa25.44■■□□□ 1.66
PHGDH-234ENST00000642041 MAST1Q9Y2H9 1570 aa25.44■■□□□ 1.66
PHGDH-234ENST00000642041 FAM50AQ14320 339 aaKnown RBP25.41■■□□□ 1.66
PHGDH-234ENST00000642041 EFCAB6Q5THR3 1501 aa25.4■■□□□ 1.66
PHGDH-234ENST00000642041 KDM5AP29375 1690 aaKnown RBP25.39■■□□□ 1.66
PHGDH-234ENST00000642041 IDI1Q13907 227 aa25.36■■□□□ 1.65
PHGDH-234ENST00000642041 SHPRHQ149N8 1683 aa25.35■■□□□ 1.65
PHGDH-234ENST00000642041 DUOX2Q9NRD8 1548 aa25.33■■□□□ 1.65
PHGDH-234ENST00000642041 AHDC1Q5TGY3 1603 aaPredicted RBP25.32■■□□□ 1.64
PHGDH-234ENST00000642041 NCOA3Q9Y6Q9 1424 aa25.31■■□□□ 1.64
PHGDH-234ENST00000642041 BCANQ96GW7 911 aa25.3■■□□□ 1.64
PHGDH-234ENST00000642041 AFF2P51816 1311 aa25.29■■□□□ 1.64
PHGDH-234ENST00000642041 CHD2O14647 1828 aaKnown RBP25.28■■□□□ 1.64
PHGDH-234ENST00000642041 SETD5Q9C0A6 1442 aa25.28■■□□□ 1.64
PHGDH-234ENST00000642041 DAPK1P53355 1430 aa25.27■■□□□ 1.64
PHGDH-234ENST00000642041 NUTM2BA6NNL0 878 aaPredicted RBP25.26■■□□□ 1.63
PHGDH-234ENST00000642041 NUTM2EB1AL46 878 aaPredicted RBP25.26■■□□□ 1.63
PHGDH-234ENST00000642041 CADPS2Q86UW7 1296 aa25.26■■□□□ 1.63
PHGDH-234ENST00000642041 NUTM2AQ8IVF1 878 aaPredicted RBP25.26■■□□□ 1.63
PHGDH-234ENST00000642041 CROCC2H7BZ55 1655 aa25.26■■□□□ 1.63
PHGDH-234ENST00000642041 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.25■■□□□ 1.635e-16■■□□□ 13.6
PHGDH-234ENST00000642041 RGS12O14924 1447 aa25.24■■□□□ 1.63
PHGDH-234ENST00000642041 ERBINQ96RT1 1412 aa25.23■■□□□ 1.63
PHGDH-234ENST00000642041 RBM6P78332 1123 aaKnown RBP25.23■■□□□ 1.63
PHGDH-234ENST00000642041 ADGRB3O60242 1522 aa25.22■■□□□ 1.63
PHGDH-234ENST00000642041 KANK1Q14678 1352 aa25.22■■□□□ 1.63
PHGDH-234ENST00000642041 C14orf37Q86TY3 774 aa25.22■■□□□ 1.63
PHGDH-234ENST00000642041 C19orf44Q9H6X5 657 aa25.22■■□□□ 1.63
PHGDH-234ENST00000642041 ABCC5O15440 1437 aa25.21■■□□□ 1.63
PHGDH-234ENST00000642041 KIF15Q9NS87 1388 aa25.21■■□□□ 1.63
PHGDH-234ENST00000642041 ATF3P18847 181 aa25.21■■□□□ 1.63
PHGDH-234ENST00000642041 ITGAEP38570 1179 aa25.21■■□□□ 1.63
PHGDH-234ENST00000642041 FOXD1Q16676 465 aa25.21■■□□□ 1.63
PHGDH-234ENST00000642041 DIP2AQ14689 1571 aa25.21■■□□□ 1.63
PHGDH-234ENST00000642041 PLEKHG1Q9ULL1 1385 aa25.2■■□□□ 1.63
PHGDH-234ENST00000642041 NUTM2DQ5VT03 806 aaPredicted RBP25.2■■□□□ 1.62
PHGDH-234ENST00000642041 QTRT2Q9H974 415 aaKnown RBP25.2■■□□□ 1.62
PHGDH-234ENST00000642041 SLC52A1Q9NWF4 448 aa25.19■■□□□ 1.62
PHGDH-234ENST00000642041 ZRANB1Q9UGI0 708 aa25.19■■□□□ 1.62
PHGDH-234ENST00000642041 NOS1P29475 1434 aa25.19■■□□□ 1.62
PHGDH-234ENST00000642041 TBX22Q9Y458 520 aa25.18■■□□□ 1.62
PHGDH-234ENST00000642041 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.17■■□□□ 1.62
PHGDH-234ENST00000642041 LMTK2Q8IWU2 1503 aa25.17■■□□□ 1.62
PHGDH-234ENST00000642041 BRINP3Q76B58 766 aa25.17■■□□□ 1.62
PHGDH-234ENST00000642041 RRP7BPQ9NSQ0 103 aa25.16■■□□□ 1.62
PHGDH-234ENST00000642041 HFM1A2PYH4 1435 aa25.15■■□□□ 1.62
PHGDH-234ENST00000642041 ZFYVE9O95405 1425 aa25.15■■□□□ 1.62
PHGDH-234ENST00000642041 HDGFP51858 240 aaKnown RBP25.15■■□□□ 1.62
PHGDH-234ENST00000642041 ROCK1Q13464 1354 aa25.14■■□□□ 1.61
PHGDH-234ENST00000642041 ATAD2Q6PL18 1390 aa25.14■■□□□ 1.61
PHGDH-234ENST00000642041 ADGRL2O95490 1459 aa25.14■■□□□ 1.61
PHGDH-234ENST00000642041 PPP1R15AO75807 674 aaPredicted RBP25.12■■□□□ 1.61
PHGDH-234ENST00000642041 C8orf37Q96NL8 207 aa25.12■■□□□ 1.61
PHGDH-234ENST00000642041 RAB3GAP2Q9H2M9 1393 aa25.11■■□□□ 1.61
PHGDH-234ENST00000642041 NGLY1Q96IV0 654 aa25.11■■□□□ 1.61
PHGDH-234ENST00000642041 RIMS2Q9UQ26 1411 aa25.1■■□□□ 1.61
PHGDH-234ENST00000642041 LRRC59Q96AG4 307 aaKnown RBP25.09■■□□□ 1.61
PHGDH-234ENST00000642041 ANKRD30AQ9BXX3 1397 aa25.08■■□□□ 1.61
PHGDH-234ENST00000642041 GCC2Q8IWJ2 1684 aa25.08■■□□□ 1.61
PHGDH-234ENST00000642041 PIK3R4Q99570 1358 aa25.07■■□□□ 1.6
PHGDH-234ENST00000642041 SETBP1Q9Y6X0 1596 aa25.07■■□□□ 1.6
PHGDH-234ENST00000642041 DHX57Q6P158 1386 aaKnown RBP25.06■■□□□ 1.6
PHGDH-234ENST00000642041 ASXL1Q8IXJ9 1541 aa25.05■■□□□ 1.6
PHGDH-234ENST00000642041 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.04■■□□□ 1.6
PHGDH-234ENST00000642041 CHIC2Q9UKJ5 165 aa25.04■■□□□ 1.6
PHGDH-234ENST00000642041 ADAMTS13Q76LX8 1427 aa25.03■■□□□ 1.6
PHGDH-234ENST00000642041 MYO5BQ9ULV0 1848 aa25.03■■□□□ 1.6
PHGDH-234ENST00000642041 EP400Q96L91 3159 aa25.03■■□□□ 1.6
PHGDH-234ENST00000642041 TIMELESSQ9UNS1 1208 aa25.03■■□□□ 1.6
PHGDH-234ENST00000642041 DCCP43146 1447 aa25.03■■□□□ 1.6
PHGDH-234ENST00000642041 PNPLA6Q8IY17 1366 aa25.01■■□□□ 1.59
PHGDH-234ENST00000642041 NAIPQ13075 1403 aa25.01■■□□□ 1.59
PHGDH-234ENST00000642041 NHSL1Q5SYE7 1610 aa25.01■■□□□ 1.59
PHGDH-234ENST00000642041 CCDC125Q86Z20 511 aa25■■□□□ 1.59
PHGDH-234ENST00000642041 AMOTL2Q9Y2J4 779 aa24.99■■□□□ 1.59
PHGDH-234ENST00000642041 TMEM131LA2VDJ0 1609 aa24.98■■□□□ 1.59
PHGDH-234ENST00000642041 RPRD2Q5VT52 1461 aaKnown RBP24.98■■□□□ 1.59
PHGDH-234ENST00000642041 MST1RQ04912 1400 aa24.96■■□□□ 1.59
PHGDH-234ENST00000642041 ADAMTS2O95450 1211 aa24.95■■□□□ 1.58
PHGDH-234ENST00000642041 TRPC5Q9UL62 973 aaPredicted RBP24.95■■□□□ 1.58
PHGDH-234ENST00000642041 USP21Q9UK80 565 aa24.94■■□□□ 1.58
PHGDH-234ENST00000642041 PTPRUQ92729 1446 aa24.93■■□□□ 1.58
PHGDH-234ENST00000642041 DDX17Q92841 729 aaKnown RBP24.92■■□□□ 1.58
PHGDH-234ENST00000642041 TRPM2O94759 1503 aa24.91■■□□□ 1.58
PHGDH-234ENST00000642041 ANKRD50Q9ULJ7 1429 aa24.9■■□□□ 1.58
PHGDH-234ENST00000642041 CHGAP10645 457 aaKnown RBP24.89■■□□□ 1.58
PHGDH-234ENST00000642041 FNBP4Q8N3X1 1017 aaPredicted RBP24.89■■□□□ 1.58
PHGDH-234ENST00000642041 ATRNO75882 1429 aa24.87■■□□□ 1.57
PHGDH-234ENST00000642041 PTCH1Q13635 1447 aa24.83■■□□□ 1.57
PHGDH-234ENST00000642041 XRN1Q8IZH2 1706 aaKnown RBP24.81■■□□□ 1.56
PHGDH-234ENST00000642041 UNC13BO14795 1591 aa24.8■■□□□ 1.56
PHGDH-234ENST00000642041 ADGRL3Q9HAR2 1447 aa24.78■■□□□ 1.56
PHGDH-234ENST00000642041 SOS2Q07890 1332 aaPredicted RBP24.78■■□□□ 1.56
PHGDH-234ENST00000642041 LRP5O75197 1615 aa24.77■■□□□ 1.56
PHGDH-234ENST00000642041 LAMC1P11047 1609 aa24.76■■□□□ 1.55
PHGDH-234ENST00000642041 BLMP54132 1417 aaPredicted RBP24.76■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms