RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 UHRF1BP1LA0JNW5 1464 aa26.49■■□□□ 1.83
SYNGAP1-227ENST00000638142 AMER1Q5JTC6 1135 aaPredicted RBP26.48■■□□□ 1.83
SYNGAP1-227ENST00000638142 WDR43Q15061 677 aaKnown RBP eCLIP26.48■■□□□ 1.839e-6■■■□□ 15.6
SYNGAP1-227ENST00000638142 NPM2Q86SE8 214 aaKnown RBP26.47■■□□□ 1.83
SYNGAP1-227ENST00000638142 CLASP1Q7Z460 1538 aa26.46■■□□□ 1.83
SYNGAP1-227ENST00000638142 ASXL1Q8IXJ9 1541 aa26.46■■□□□ 1.83
SYNGAP1-227ENST00000638142 PIK3C2GO75747 1445 aa26.46■■□□□ 1.83
SYNGAP1-227ENST00000638142 ARAP3Q8WWN8 1544 aa26.45■■□□□ 1.83
SYNGAP1-227ENST00000638142 NPC1L1Q9UHC9 1359 aa26.45■■□□□ 1.82
SYNGAP1-227ENST00000638142 DEPDC5O75140 1603 aa26.45■■□□□ 1.82
SYNGAP1-227ENST00000638142 SPAG9O60271 1321 aaKnown RBP26.45■■□□□ 1.82
SYNGAP1-227ENST00000638142 ZFYVE16Q7Z3T8 1539 aa26.44■■□□□ 1.82
SYNGAP1-227ENST00000638142 PLEKHH1Q9ULM0 1364 aa26.44■■□□□ 1.82
SYNGAP1-227ENST00000638142 CLTCL1P53675 1640 aa26.43■■□□□ 1.82
SYNGAP1-227ENST00000638142 ZNF521Q96K83 1311 aa26.43■■□□□ 1.82
SYNGAP1-227ENST00000638142 DUSP27Q5VZP5 1158 aa26.42■■□□□ 1.82
SYNGAP1-227ENST00000638142 EIF3AQ14152 1382 aaKnown RBP26.42■■□□□ 1.82
SYNGAP1-227ENST00000638142 TET3O43151 1660 aa26.42■■□□□ 1.82
SYNGAP1-227ENST00000638142 KIAA1210Q9ULL0 1709 aa26.41■■□□□ 1.82
SYNGAP1-227ENST00000638142 MYOM1P52179 1685 aa26.41■■□□□ 1.82
SYNGAP1-227ENST00000638142 NEURL4Q96JN8 1562 aa26.4■■□□□ 1.82
SYNGAP1-227ENST00000638142 GOLGA2Q08379 1002 aa26.39■■□□□ 1.82
SYNGAP1-227ENST00000638142 KDM2BQ8NHM5 1336 aa26.38■■□□□ 1.81
SYNGAP1-227ENST00000638142 C20orf194Q5TEA3 1177 aa26.38■■□□□ 1.81
SYNGAP1-227ENST00000638142 GOLGA6L2Q8N9W4 650 aaPredicted RBP26.36■■□□□ 1.81
SYNGAP1-227ENST00000638142 KDM5AP29375 1690 aaKnown RBP26.36■■□□□ 1.81
SYNGAP1-227ENST00000638142 VWDEQ8N2E2 1590 aa26.36■■□□□ 1.81
SYNGAP1-227ENST00000638142 CENPQQ7L2Z9 268 aaPredicted RBP26.36■■□□□ 1.81
SYNGAP1-227ENST00000638142 SLC24A1O60721 1099 aa26.35■■□□□ 1.81
SYNGAP1-227ENST00000638142 KANK1Q14678 1352 aa26.34■■□□□ 1.81
SYNGAP1-227ENST00000638142 AFAP1Q8N556 730 aa26.33■■□□□ 1.81
SYNGAP1-227ENST00000638142 DDRGK1Q96HY6 314 aa26.33■■□□□ 1.81
SYNGAP1-227ENST00000638142 USP35Q9P2H5 1018 aa26.33■■□□□ 1.81
SYNGAP1-227ENST00000638142 SLFN5Q08AF3 891 aa26.31■■□□□ 1.8
SYNGAP1-227ENST00000638142 DNAJC5Q9H3Z4 198 aa26.31■■□□□ 1.8
SYNGAP1-227ENST00000638142 INO80Q9ULG1 1556 aaPredicted RBP26.31■■□□□ 1.8
SYNGAP1-227ENST00000638142 ATP7AQ04656 1500 aa26.3■■□□□ 1.8
SYNGAP1-227ENST00000638142 TRMT2AQ8IZ69 625 aaKnown RBP26.29■■□□□ 1.8
SYNGAP1-227ENST00000638142 MYOM2P54296 1465 aa26.29■■□□□ 1.8
SYNGAP1-227ENST00000638142 PPM1GO15355 546 aaPredicted RBP26.28■■□□□ 1.8
SYNGAP1-227ENST00000638142 MAP3K4Q9Y6R4 1608 aa26.27■■□□□ 1.8
SYNGAP1-227ENST00000638142 SKAP1Q86WV1 359 aa26.27■■□□□ 1.8
SYNGAP1-227ENST00000638142 NGEFQ8N5V2 710 aa26.25■■□□□ 1.79
SYNGAP1-227ENST00000638142 NKTRP30414 1462 aaKnown RBP26.24■■□□□ 1.79
SYNGAP1-227ENST00000638142 ERVK-7P63135 1459 aa26.24■■□□□ 1.79
SYNGAP1-227ENST00000638142 ABCA9Q8IUA7 1624 aa26.24■■□□□ 1.79
SYNGAP1-227ENST00000638142 LAS1LQ9Y4W2 734 aaKnown RBP26.24■■□□□ 1.79
SYNGAP1-227ENST00000638142 ABCA6Q8N139 1617 aa26.23■■□□□ 1.79
SYNGAP1-227ENST00000638142 NEFMP07197 916 aa26.23■■□□□ 1.79
SYNGAP1-227ENST00000638142 FANCAO15360 1455 aa26.21■■□□□ 1.79
SYNGAP1-227ENST00000638142 CCDC146Q8IYE0 955 aa26.2■■□□□ 1.78
SYNGAP1-227ENST00000638142 MROH1Q8NDA8 1641 aa26.2■■□□□ 1.78
SYNGAP1-227ENST00000638142 E9PSI1 815 aa26.2■■□□□ 1.78
SYNGAP1-227ENST00000638142 KIF3BO15066 747 aa26.2■■□□□ 1.78
SYNGAP1-227ENST00000638142 FAM161AQ3B820 660 aa26.2■■□□□ 1.78
SYNGAP1-227ENST00000638142 APAF1O14727 1248 aa26.19■■□□□ 1.78
SYNGAP1-227ENST00000638142 CFAP70Q5T0N1 1121 aa26.19■■□□□ 1.78
SYNGAP1-227ENST00000638142 KIF1BO60333 1816 aa26.18■■□□□ 1.78
SYNGAP1-227ENST00000638142 SBNO2Q9Y2G9 1366 aa26.18■■□□□ 1.78
SYNGAP1-227ENST00000638142 MYO3AQ8NEV4 1616 aa26.18■■□□□ 1.78
SYNGAP1-227ENST00000638142 IFT172Q9UG01 1749 aa26.18■■□□□ 1.78
SYNGAP1-227ENST00000638142 EFCAB6Q5THR3 1501 aa26.16■■□□□ 1.78
SYNGAP1-227ENST00000638142 NRXN1Q9ULB1 1477 aa26.15■■□□□ 1.78
SYNGAP1-227ENST00000638142 UGGT1Q9NYU2 1555 aa26.15■■□□□ 1.78
SYNGAP1-227ENST00000638142 SPINK5Q9NQ38 1064 aaPredicted RBP26.15■■□□□ 1.78
SYNGAP1-227ENST00000638142 ADGRF5Q8IZF2 1346 aa26.15■■□□□ 1.78
SYNGAP1-227ENST00000638142 C8orf34Q49A92 452 aa26.14■■□□□ 1.78
SYNGAP1-227ENST00000638142 ADGRL1O94910 1474 aa26.14■■□□□ 1.77
SYNGAP1-227ENST00000638142 CARD14Q9BXL6 1004 aa26.14■■□□□ 1.77
SYNGAP1-227ENST00000638142 POLR3AO14802 1390 aaPredicted RBP26.13■■□□□ 1.77
SYNGAP1-227ENST00000638142 NINLQ9Y2I6 1382 aa26.11■■□□□ 1.77
SYNGAP1-227ENST00000638142 SETBP1Q9Y6X0 1596 aa26.1■■□□□ 1.77
SYNGAP1-227ENST00000638142 LMTK2Q8IWU2 1503 aa26.09■■□□□ 1.77
SYNGAP1-227ENST00000638142 MROH2AA6NES4 1674 aa26.09■■□□□ 1.77
SYNGAP1-227ENST00000638142 BCAR3O75815 825 aa26.08■■□□□ 1.77
SYNGAP1-227ENST00000638142 PPRC1Q5VV67 1664 aaKnown RBP26.07■■□□□ 1.76
SYNGAP1-227ENST00000638142 DAXXQ9UER7 740 aaPredicted RBP26.07■■□□□ 1.76
SYNGAP1-227ENST00000638142 PDE3AQ14432 1141 aa26.07■■□□□ 1.76
SYNGAP1-227ENST00000638142 CGNL1Q0VF96 1302 aa26.06■■□□□ 1.76
SYNGAP1-227ENST00000638142 ADGRB3O60242 1522 aa26.05■■□□□ 1.76
SYNGAP1-227ENST00000638142 CENPJQ9HC77 1338 aaPredicted RBP26.05■■□□□ 1.76
SYNGAP1-227ENST00000638142 RGS3P49796 1198 aa26.04■■□□□ 1.76
SYNGAP1-227ENST00000638142 DMRT2Q9Y5R5 561 aa26.03■■□□□ 1.76
SYNGAP1-227ENST00000638142 KIDINS220Q9ULH0 1771 aa26.02■■□□□ 1.76
SYNGAP1-227ENST00000638142 WWC1Q8IX03 1113 aa26.02■■□□□ 1.76
SYNGAP1-227ENST00000638142 OSCARQ8IYS5 282 aa26.02■■□□□ 1.76
SYNGAP1-227ENST00000638142 NOS1P29475 1434 aa26.01■■□□□ 1.75
SYNGAP1-227ENST00000638142 SHPRHQ149N8 1683 aa26■■□□□ 1.75
SYNGAP1-227ENST00000638142 NSD3Q9BZ95 1437 aa26■■□□□ 1.75
SYNGAP1-227ENST00000638142 ZC3H13Q5T200 1668 aaKnown RBP25.99■■□□□ 1.75
SYNGAP1-227ENST00000638142 IL27Q8NEV9 243 aa25.99■■□□□ 1.75
SYNGAP1-227ENST00000638142 NFKBIBQ15653 356 aa25.98■■□□□ 1.75
SYNGAP1-227ENST00000638142 VIRMAQ69YN4 1812 aaKnown RBP25.98■■□□□ 1.75
SYNGAP1-227ENST00000638142 MORC1Q86VD1 984 aa25.97■■□□□ 1.75
SYNGAP1-227ENST00000638142 SLC4A3P48751 1232 aa25.97■■□□□ 1.75
SYNGAP1-227ENST00000638142 USP32Q8NFA0 1604 aa25.97■■□□□ 1.75
SYNGAP1-227ENST00000638142 ZNF518AQ6AHZ1 1483 aa25.97■■□□□ 1.75
SYNGAP1-227ENST00000638142 CLUAP1Q96AJ1 413 aa25.96■■□□□ 1.75
SYNGAP1-227ENST00000638142 QRICH2Q9H0J4 1663 aa25.96■■□□□ 1.75
SYNGAP1-227ENST00000638142 IGHDP01880 384 aa25.95■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms