RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-223ENST00000637823 NEXMIFQ5QGS0 1516 aa16.62■□□□□ 0.25
CLN6-223ENST00000637823 VGFO15240 615 aaPredicted RBP16.62■□□□□ 0.25
CLN6-223ENST00000637823 LAMC1P11047 1609 aa16.62■□□□□ 0.25
CLN6-223ENST00000637823 NRXN1Q9ULB1 1477 aa16.61■□□□□ 0.25
CLN6-223ENST00000637823 SETD1BQ9UPS6 1966 aaKnown RBP16.61■□□□□ 0.25
CLN6-223ENST00000637823 HSPA5P11021 654 aaKnown RBP16.61■□□□□ 0.25
CLN6-223ENST00000637823 ROCK2O75116 1388 aaKnown RBP16.61■□□□□ 0.25
CLN6-223ENST00000637823 ZFYVE9O95405 1425 aa16.61■□□□□ 0.25
CLN6-223ENST00000637823 NLRP1Q9C000 1473 aa16.61■□□□□ 0.25
CLN6-223ENST00000637823 CARD11Q9BXL7 1154 aa16.6■□□□□ 0.25
CLN6-223ENST00000637823 ADGRF5Q8IZF2 1346 aa16.6■□□□□ 0.25
CLN6-223ENST00000637823 GPRASP1Q5JY77 1395 aa16.6■□□□□ 0.25
CLN6-223ENST00000637823 A2ML1A8K2U0 1454 aa16.6■□□□□ 0.25
CLN6-223ENST00000637823 UBR1Q8IWV7 1749 aa16.59■□□□□ 0.25
CLN6-223ENST00000637823 NBPF1Q3BBV0 1214 aa16.58■□□□□ 0.24
CLN6-223ENST00000637823 HIRIP3Q9BW71 556 aaPredicted RBP16.57■□□□□ 0.24
CLN6-223ENST00000637823 USP47Q96K76 1375 aa16.56■□□□□ 0.24
CLN6-223ENST00000637823 HDGFP51858 240 aaKnown RBP16.56■□□□□ 0.24
CLN6-223ENST00000637823 PIK3C2GO75747 1445 aa16.54■□□□□ 0.24
CLN6-223ENST00000637823 RIMS2Q9UQ26 1411 aa16.54■□□□□ 0.24
CLN6-223ENST00000637823 CFAP70Q5T0N1 1121 aa16.54■□□□□ 0.24
CLN6-223ENST00000637823 PLPPR3Q6T4P5 718 aa16.54■□□□□ 0.24
CLN6-223ENST00000637823 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.54■□□□□ 0.24
CLN6-223ENST00000637823 C14orf93Q9H972 538 aaKnown RBP16.54■□□□□ 0.24
CLN6-223ENST00000637823 SETBP1Q9Y6X0 1596 aa16.53■□□□□ 0.24
CLN6-223ENST00000637823 POLR1AO95602 1720 aaPredicted RBP16.53■□□□□ 0.24
CLN6-223ENST00000637823 MYO3AQ8NEV4 1616 aa16.52■□□□□ 0.24
CLN6-223ENST00000637823 NUTM2DQ5VT03 806 aaPredicted RBP16.52■□□□□ 0.24
CLN6-223ENST00000637823 IQGAP1P46940 1657 aa16.52■□□□□ 0.23
CLN6-223ENST00000637823 DIEXFQ68CQ4 756 aaKnown RBP16.51■□□□□ 0.23
CLN6-223ENST00000637823 THEMISQ8N1K5 641 aaPredicted RBP16.5■□□□□ 0.23
CLN6-223ENST00000637823 TMEM2Q9UHN6 1383 aa16.5■□□□□ 0.23
CLN6-223ENST00000637823 PTPRMP28827 1452 aa16.49■□□□□ 0.23
CLN6-223ENST00000637823 SCAF11Q99590 1463 aaKnown RBP16.48■□□□□ 0.23
CLN6-223ENST00000637823 ST20-MTHFSA0A0A6YYL1 179 aa16.48■□□□□ 0.23
CLN6-223ENST00000637823 ZNF142P52746 1687 aaPredicted RBP16.47■□□□□ 0.23
CLN6-223ENST00000637823 CEP170BQ9Y4F5 1589 aaPredicted RBP16.47■□□□□ 0.23
CLN6-223ENST00000637823 SLIT1O75093 1534 aa16.46■□□□□ 0.23
CLN6-223ENST00000637823 ALKQ9UM73 1620 aa16.45■□□□□ 0.22
CLN6-223ENST00000637823 EID1Q9Y6B2 187 aa16.45■□□□□ 0.22
CLN6-223ENST00000637823 ARHGAP23Q9P227 1491 aa16.45■□□□□ 0.22
CLN6-223ENST00000637823 ADGRB1O14514 1584 aa16.45■□□□□ 0.22
CLN6-223ENST00000637823 EIF3AQ14152 1382 aaKnown RBP16.44■□□□□ 0.22
CLN6-223ENST00000637823 C11orf95C9JLR9 678 aaPredicted RBP16.43■□□□□ 0.22
CLN6-223ENST00000637823 TXNDC2Q86VQ3 553 aa16.43■□□□□ 0.22
CLN6-223ENST00000637823 WASHC2AQ641Q2 1341 aa16.43■□□□□ 0.22
CLN6-223ENST00000637823 CCDC7Q96M83 1385 aa16.42■□□□□ 0.22
CLN6-223ENST00000637823 SLC24A1O60721 1099 aa16.42■□□□□ 0.22
CLN6-223ENST00000637823 TMEM132EQ6IEE7 984 aa16.42■□□□□ 0.22
CLN6-223ENST00000637823 SETD1AO15047 1707 aaKnown RBP16.42■□□□□ 0.22
CLN6-223ENST00000637823 NRXN3Q9Y4C0 1643 aa16.41■□□□□ 0.22
CLN6-223ENST00000637823 LTKP29376 864 aa16.41■□□□□ 0.22
CLN6-223ENST00000637823 DDX10Q13206 875 aaKnown RBP16.41■□□□□ 0.22
CLN6-223ENST00000637823 PLEKHG1Q9ULL1 1385 aa16.4■□□□□ 0.22
CLN6-223ENST00000637823 TESK2Q96S53 571 aa16.4■□□□□ 0.22
CLN6-223ENST00000637823 KIF7Q2M1P5 1343 aa16.4■□□□□ 0.22
CLN6-223ENST00000637823 BCANQ96GW7 911 aa16.38■□□□□ 0.21
CLN6-223ENST00000637823 TRAK1Q9UPV9 953 aa16.38■□□□□ 0.21
CLN6-223ENST00000637823 ARHGEF28Q8N1W1 1705 aaKnown RBP16.38■□□□□ 0.21
CLN6-223ENST00000637823 ASXL1Q8IXJ9 1541 aa16.38■□□□□ 0.21
CLN6-223ENST00000637823 KDM4FA0A1W2PPD8 638 aa16.37■□□□□ 0.21
CLN6-223ENST00000637823 TMF1P82094 1093 aa16.37■□□□□ 0.21
CLN6-223ENST00000637823 SENP3Q9H4L4 574 aaPredicted RBP16.37■□□□□ 0.21
CLN6-223ENST00000637823 YTHDC2Q9H6S0 1430 aaKnown RBP16.36■□□□□ 0.21
CLN6-223ENST00000637823 CENPJQ9HC77 1338 aaPredicted RBP16.36■□□□□ 0.21
CLN6-223ENST00000637823 QRICH2Q9H0J4 1663 aa16.35■□□□□ 0.21
CLN6-223ENST00000637823 ANKLE2Q86XL3 938 aa16.35■□□□□ 0.21
CLN6-223ENST00000637823 CDCA8Q53HL2 280 aa16.34■□□□□ 0.21
CLN6-223ENST00000637823 STK26Q9P289 416 aa16.34■□□□□ 0.21
CLN6-223ENST00000637823 LRPPRCP42704 1394 aaKnown RBP16.34■□□□□ 0.21
CLN6-223ENST00000637823 SBNO2Q9Y2G9 1366 aa16.34■□□□□ 0.21
CLN6-223ENST00000637823 ADAMTS13Q76LX8 1427 aa16.34■□□□□ 0.21
CLN6-223ENST00000637823 MED14O60244 1454 aa16.34■□□□□ 0.21
CLN6-223ENST00000637823 ILDR1Q86SU0 546 aaPredicted RBP16.33■□□□□ 0.2
CLN6-223ENST00000637823 TBX22Q9Y458 520 aa16.33■□□□□ 0.2
CLN6-223ENST00000637823 DIP2AQ14689 1571 aa16.33■□□□□ 0.2
CLN6-223ENST00000637823 ABCC11Q96J66 1382 aa16.32■□□□□ 0.2
CLN6-223ENST00000637823 DLC1Q96QB1 1528 aa16.32■□□□□ 0.2
CLN6-223ENST00000637823 DISP3Q9P2K9 1392 aa16.32■□□□□ 0.2
CLN6-223ENST00000637823 KNDC1Q76NI1 1749 aa16.31■□□□□ 0.2
CLN6-223ENST00000637823 METP08581 1390 aa16.31■□□□□ 0.2
CLN6-223ENST00000637823 SIRT1Q96EB6 747 aa16.31■□□□□ 0.2
CLN6-223ENST00000637823 POLR3GLQ9BT43 218 aa16.3■□□□□ 0.2
CLN6-223ENST00000637823 SLC26A8Q96RN1 970 aa16.28■□□□□ 0.2
CLN6-223ENST00000637823 POGKQ9P215 609 aa16.28■□□□□ 0.2
CLN6-223ENST00000637823 PRAM1Q96QH2 718 aa16.27■□□□□ 0.2
CLN6-223ENST00000637823 TECPR2O15040 1411 aa16.27■□□□□ 0.19
CLN6-223ENST00000637823 MIER1Q8N108 512 aa16.26■□□□□ 0.19
CLN6-223ENST00000637823 PUS7Q96PZ0 661 aaKnown RBP16.26■□□□□ 0.19
CLN6-223ENST00000637823 EVC2Q86UK5 1308 aa16.25■□□□□ 0.19
CLN6-223ENST00000637823 FAM135BQ49AJ0 1406 aa16.25■□□□□ 0.19
CLN6-223ENST00000637823 PIK3R4Q99570 1358 aa16.25■□□□□ 0.19
CLN6-223ENST00000637823 CPS1P31327 1500 aa16.24■□□□□ 0.19
CLN6-223ENST00000637823 CHD2O14647 1828 aaKnown RBP16.24■□□□□ 0.19
CLN6-223ENST00000637823 NPHP4O75161 1426 aaPredicted RBP16.23■□□□□ 0.19
CLN6-223ENST00000637823 NCKAP5LQ9HCH0 1330 aa16.22■□□□□ 0.19
CLN6-223ENST00000637823 PTPRUQ92729 1446 aa16.22■□□□□ 0.19
CLN6-223ENST00000637823 ANP32CO43423 234 aa16.22■□□□□ 0.19
CLN6-223ENST00000637823 SAFB2Q14151 953 aaKnown RBP eCLIP16.22■□□□□ 0.19
CLN6-223ENST00000637823 WAPLQ7Z5K2 1190 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms