RNA–Protein interactions for RNA: ENST00000637285.1

SCN1A-215, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 100 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-215ENST00000637285 LIAT1Q6ZQX7 453 aa5.11□□□□□ -1.59
SCN1A-215ENST00000637285 PRR14Q9BWN1 585 aa5.11□□□□□ -1.59
SCN1A-215ENST00000637285 RBM27Q9P2N5 1060 aaKnown RBP5.11□□□□□ -1.59
SCN1A-215ENST00000637285 PRR20EP86478 221 aa5.1□□□□□ -1.59
SCN1A-215ENST00000637285 PRR20CP86479 221 aa5.1□□□□□ -1.59
SCN1A-215ENST00000637285 PRR20DP86480 221 aa5.1□□□□□ -1.59
SCN1A-215ENST00000637285 PRR20BP86481 221 aa5.1□□□□□ -1.59
SCN1A-215ENST00000637285 PRR20AP86496 221 aa5.1□□□□□ -1.59
SCN1A-215ENST00000637285 S1PR4O95977 384 aa5.09□□□□□ -1.59
SCN1A-215ENST00000637285 E2F4Q16254 413 aa5.09□□□□□ -1.59
SCN1A-215ENST00000637285 ANKLE1Q8NAG6 615 aa5.09□□□□□ -1.59
SCN1A-215ENST00000637285 TTC13Q8NBP0 860 aa5.09□□□□□ -1.59
SCN1A-215ENST00000637285 GDF9O60383 454 aa5.08□□□□□ -1.6
SCN1A-215ENST00000637285 NPDC1Q9NQX5 325 aaPredicted RBP5.08□□□□□ -1.6
SCN1A-215ENST00000637285 AAASQ9NRG9 546 aa5.08□□□□□ -1.6
SCN1A-215ENST00000637285 FOXC1Q12948 553 aa5.07□□□□□ -1.6
SCN1A-215ENST00000637285 EYA1Q99502 592 aa5.07□□□□□ -1.6
SCN1A-215ENST00000637285 LCE2AQ5TA79 106 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-215ENST00000637285 WDR70Q9NW82 654 aa5.06□□□□□ -1.6
SCN1A-215ENST00000637285 WFS1O76024 890 aa5.05□□□□□ -1.6
SCN1A-215ENST00000637285 KMT5BQ4FZB7 885 aa5.05□□□□□ -1.6
SCN1A-215ENST00000637285 DACH1Q9UI36 760 aa5.05□□□□□ -1.6
SCN1A-215ENST00000637285 ADH1BP00325 375 aa5.04□□□□□ -1.6
SCN1A-215ENST00000637285 CFHP08603 1231 aa5.04□□□□□ -1.6
SCN1A-215ENST00000637285 PLA2G2CQ5R387 149 aa5.04□□□□□ -1.6
SCN1A-215ENST00000637285 SLC6A16Q9GZN6 736 aa5.04□□□□□ -1.6
SCN1A-215ENST00000637285 C11orf95C9JLR9 678 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-215ENST00000637285 ACTN4O43707 911 aaKnown RBP5.03□□□□□ -1.6
SCN1A-215ENST00000637285 DNAJB2P25686 324 aa5.03□□□□□ -1.6
SCN1A-215ENST00000637285 GMPR2Q9P2T1 348 aaKnown RBP5.03□□□□□ -1.6
SCN1A-215ENST00000637285 ARIH1Q9Y4X5 557 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-215ENST00000637285 NR1I2O75469 434 aa5.02□□□□□ -1.61
SCN1A-215ENST00000637285 PKD2L1Q9P0L9 805 aa5.02□□□□□ -1.61
SCN1A-215ENST00000637285 AXIN1O15169 862 aa5.01□□□□□ -1.61
SCN1A-215ENST00000637285 RBM46Q8TBY0 533 aaKnown RBP5.01□□□□□ -1.61
SCN1A-215ENST00000637285 BBXQ8WY36 941 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-215ENST00000637285 TMEM134Q9H6X4 195 aa5.01□□□□□ -1.61
SCN1A-215ENST00000637285 STK17AQ9UEE5 414 aa5.01□□□□□ -1.61
SCN1A-215ENST00000637285 RCCD1A6NED2 376 aa5□□□□□ -1.61
SCN1A-215ENST00000637285 FAM161AQ3B820 660 aa5□□□□□ -1.61
SCN1A-215ENST00000637285 SPRYD3Q8NCJ5 442 aa5□□□□□ -1.61
SCN1A-215ENST00000637285 SLC10A3P09131 477 aa4.99□□□□□ -1.61
SCN1A-215ENST00000637285 INSM1Q01101 510 aaPredicted RBP4.99□□□□□ -1.61
SCN1A-215ENST00000637285 PUS10Q3MIT2 529 aaKnown RBP4.99□□□□□ -1.61
SCN1A-215ENST00000637285 LMOD2Q6P5Q4 547 aa4.99□□□□□ -1.61
SCN1A-215ENST00000637285 SCUBE3Q8IX30 993 aa4.99□□□□□ -1.61
SCN1A-215ENST00000637285 CYP4X1Q8N118 509 aa4.99□□□□□ -1.61
SCN1A-215ENST00000637285 ADGRG1Q9Y653 693 aa4.99□□□□□ -1.61
SCN1A-215ENST00000637285 NFX1Q12986 1120 aaKnown RBP4.98□□□□□ -1.61
SCN1A-215ENST00000637285 CRIPAKQ8N1N5 446 aa4.98□□□□□ -1.61
SCN1A-215ENST00000637285 SPSB2Q99619 263 aa4.98□□□□□ -1.61
SCN1A-215ENST00000637285 TTC24A2A3L6 582 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-215ENST00000637285 CD2BP2O95400 341 aaKnown RBP4.97□□□□□ -1.61
SCN1A-215ENST00000637285 AVPP01185 164 aa4.97□□□□□ -1.61
SCN1A-215ENST00000637285 MLLT3P42568 568 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-215ENST00000637285 TOR4AQ9NXH8 423 aa4.97□□□□□ -1.61
SCN1A-215ENST00000637285 WIPF1O43516 503 aa4.96□□□□□ -1.62
SCN1A-215ENST00000637285 RPIAP49247 311 aa4.96□□□□□ -1.62
SCN1A-215ENST00000637285 PTGDRQ13258 359 aa4.96□□□□□ -1.62
SCN1A-215ENST00000637285 CTC1Q2NKJ3 1217 aa4.96□□□□□ -1.62
SCN1A-215ENST00000637285 FCF1Q9Y324 198 aaKnown RBP4.96□□□□□ -1.62
SCN1A-215ENST00000637285 NUTM2FA1L443 756 aa4.95□□□□□ -1.62
SCN1A-215ENST00000637285 SNRPBP14678 240 aaKnown RBP4.94□□□□□ -1.62
SCN1A-215ENST00000637285 SMCPP49901 116 aaPredicted RBP4.94□□□□□ -1.62
SCN1A-215ENST00000637285 RSPH4AQ5TD94 716 aa4.94□□□□□ -1.62
SCN1A-215ENST00000637285 CFAP44Q96MT7 982 aa4.94□□□□□ -1.62
SCN1A-215ENST00000637285 ZBTB4Q9P1Z0 1013 aaPredicted RBP4.94□□□□□ -1.62
SCN1A-215ENST00000637285 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP4.93□□□□□ -1.62
SCN1A-215ENST00000637285 TERTO14746 1132 aaKnown RBP4.93□□□□□ -1.62
SCN1A-215ENST00000637285 LCE2CQ5TA81 110 aa4.93□□□□□ -1.62
SCN1A-215ENST00000637285 PAXIP1Q6ZW49 1069 aaPredicted RBP4.93□□□□□ -1.62
SCN1A-215ENST00000637285 ATP13A2Q9NQ11 1180 aa4.93□□□□□ -1.62
SCN1A-215ENST00000637285 ZBTB24O43167 697 aaPredicted RBP4.92□□□□□ -1.62
SCN1A-215ENST00000637285 RDH13Q8NBN7 331 aa4.91□□□□□ -1.62
SCN1A-215ENST00000637285 FMNL1O95466 1100 aaPredicted RBP4.9□□□□□ -1.63
SCN1A-215ENST00000637285 SMPD1P17405 629 aa4.9□□□□□ -1.63
SCN1A-215ENST00000637285 MORN1Q5T089 497 aa4.9□□□□□ -1.63
SCN1A-215ENST00000637285 FAM160A2Q8N612 972 aaPredicted RBP4.9□□□□□ -1.63
SCN1A-215ENST00000637285 SENP2Q9HC62 589 aa4.9□□□□□ -1.63
SCN1A-215ENST00000637285 PRDM9Q9NQV7 894 aa4.9□□□□□ -1.63
SCN1A-215ENST00000637285 J3QL48 77 aa4.89□□□□□ -1.63
SCN1A-215ENST00000637285 FCHSD2O94868 740 aa4.89□□□□□ -1.63
SCN1A-215ENST00000637285 OATP04181 439 aa4.89□□□□□ -1.63
SCN1A-215ENST00000637285 FUT2Q10981 343 aa4.89□□□□□ -1.63
SCN1A-215ENST00000637285 SNIP1Q8TAD8 396 aaKnown RBP4.89□□□□□ -1.63
SCN1A-215ENST00000637285 PXYLP1Q8TE99 480 aa4.89□□□□□ -1.63
SCN1A-215ENST00000637285 THAP11Q96EK4 314 aa4.89□□□□□ -1.63
SCN1A-215ENST00000637285 TRIM47Q96LD4 638 aa4.89□□□□□ -1.63
SCN1A-215ENST00000637285 SLC27A5Q9Y2P5 690 aa4.89□□□□□ -1.63
SCN1A-215ENST00000637285 FAM181BA6NEQ2 426 aa4.88□□□□□ -1.63
SCN1A-215ENST00000637285 WNT7AO00755 349 aa4.88□□□□□ -1.63
SCN1A-215ENST00000637285 FECHP22830 423 aa4.88□□□□□ -1.63
SCN1A-215ENST00000637285 ATP6V1AP38606 617 aa4.88□□□□□ -1.63
SCN1A-215ENST00000637285 ARHGEF1Q92888 912 aaKnown RBP4.88□□□□□ -1.63
SCN1A-215ENST00000637285 MRGPRX2Q96LB1 330 aa4.88□□□□□ -1.63
SCN1A-215ENST00000637285 DDX11L8A8MPP1 907 aa4.87□□□□□ -1.63
SCN1A-215ENST00000637285 SLC16A10Q8TF71 515 aa4.87□□□□□ -1.63
SCN1A-215ENST00000637285 HPS1Q92902 700 aa4.87□□□□□ -1.63
SCN1A-215ENST00000637285 KIFC2Q96AC6 838 aa4.87□□□□□ -1.63
SCN1A-215ENST00000637285 TRIM32Q13049 653 aa4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms