RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 MYO5BQ9ULV0 1848 aa26■■□□□ 1.75
CLN3-254ENST00000637050 ADGRF5Q8IZF2 1346 aa26■■□□□ 1.75
CLN3-254ENST00000637050 USP47Q96K76 1375 aa25.99■■□□□ 1.75
CLN3-254ENST00000637050 KIAA1210Q9ULL0 1709 aa25.99■■□□□ 1.75
CLN3-254ENST00000637050 NBPF1Q3BBV0 1214 aa25.99■■□□□ 1.75
CLN3-254ENST00000637050 ADAMTSL3P82987 1691 aa25.98■■□□□ 1.75
CLN3-254ENST00000637050 DIEXFQ68CQ4 756 aaKnown RBP25.97■■□□□ 1.75
CLN3-254ENST00000637050 A2ML1A8K2U0 1454 aa25.96■■□□□ 1.75
CLN3-254ENST00000637050 CEBPAP49715 358 aaPredicted RBP25.95■■□□□ 1.74
CLN3-254ENST00000637050 ZFYVE9O95405 1425 aa25.95■■□□□ 1.74
CLN3-254ENST00000637050 PIK3C2GO75747 1445 aa25.94■■□□□ 1.74
CLN3-254ENST00000637050 VGFO15240 615 aaPredicted RBP25.93■■□□□ 1.74
CLN3-254ENST00000637050 KDM5AP29375 1690 aaKnown RBP25.93■■□□□ 1.74
CLN3-254ENST00000637050 STAG3Q9UJ98 1225 aa25.93■■□□□ 1.74
CLN3-254ENST00000637050 RIMS1Q86UR5 1692 aaKnown RBP25.92■■□□□ 1.74
CLN3-254ENST00000637050 NLRP1Q9C000 1473 aa25.91■■□□□ 1.74
CLN3-254ENST00000637050 CFAP70Q5T0N1 1121 aa25.88■■□□□ 1.73
CLN3-254ENST00000637050 UBR1Q8IWV7 1749 aa25.86■■□□□ 1.73
CLN3-254ENST00000637050 C14orf93Q9H972 538 aaKnown RBP25.86■■□□□ 1.73
CLN3-254ENST00000637050 SETBP1Q9Y6X0 1596 aa25.86■■□□□ 1.73
CLN3-254ENST00000637050 IQGAP1P46940 1657 aa25.85■■□□□ 1.73
CLN3-254ENST00000637050 NUTM2DQ5VT03 806 aaPredicted RBP25.85■■□□□ 1.73
CLN3-254ENST00000637050 RIMS2Q9UQ26 1411 aa25.84■■□□□ 1.73
CLN3-254ENST00000637050 ST20-MTHFSA0A0A6YYL1 179 aa25.83■■□□□ 1.73
CLN3-254ENST00000637050 SCAF11Q99590 1463 aaKnown RBP25.83■■□□□ 1.72
CLN3-254ENST00000637050 POLR1AO95602 1720 aaPredicted RBP25.81■■□□□ 1.72
CLN3-254ENST00000637050 WASHC2AQ641Q2 1341 aa25.81■■□□□ 1.72
CLN3-254ENST00000637050 C11orf95C9JLR9 678 aaPredicted RBP25.81■■□□□ 1.72
CLN3-254ENST00000637050 PLPPR3Q6T4P5 718 aa25.8■■□□□ 1.72
CLN3-254ENST00000637050 MYO3AQ8NEV4 1616 aa25.8■■□□□ 1.72
CLN3-254ENST00000637050 ADGRB1O14514 1584 aa25.79■■□□□ 1.72
CLN3-254ENST00000637050 CCDC7Q96M83 1385 aa25.78■■□□□ 1.72
CLN3-254ENST00000637050 TMEM2Q9UHN6 1383 aa25.78■■□□□ 1.72
CLN3-254ENST00000637050 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.77■■□□□ 1.72
CLN3-254ENST00000637050 DDX10Q13206 875 aaKnown RBP25.77■■□□□ 1.72
CLN3-254ENST00000637050 KIF7Q2M1P5 1343 aa25.75■■□□□ 1.71
CLN3-254ENST00000637050 HDGFP51858 240 aaKnown RBP25.74■■□□□ 1.71
CLN3-254ENST00000637050 EIF3AQ14152 1382 aaKnown RBP25.73■■□□□ 1.71
CLN3-254ENST00000637050 TESK2Q96S53 571 aa25.73■■□□□ 1.71
CLN3-254ENST00000637050 ALKQ9UM73 1620 aa25.72■■□□□ 1.71
CLN3-254ENST00000637050 PTPRMP28827 1452 aa25.71■■□□□ 1.71
CLN3-254ENST00000637050 SLIT1O75093 1534 aa25.71■■□□□ 1.71
CLN3-254ENST00000637050 CEP170BQ9Y4F5 1589 aaPredicted RBP25.71■■□□□ 1.71
CLN3-254ENST00000637050 ARHGAP23Q9P227 1491 aa25.71■■□□□ 1.71
CLN3-254ENST00000637050 ASXL1Q8IXJ9 1541 aa25.7■■□□□ 1.7
CLN3-254ENST00000637050 TMEM132EQ6IEE7 984 aa25.69■■□□□ 1.7
CLN3-254ENST00000637050 NRXN3Q9Y4C0 1643 aa25.68■■□□□ 1.7
CLN3-254ENST00000637050 THEMISQ8N1K5 641 aaPredicted RBP25.68■■□□□ 1.7
CLN3-254ENST00000637050 ZNF142P52746 1687 aaPredicted RBP25.67■■□□□ 1.7
CLN3-254ENST00000637050 SETD1BQ9UPS6 1966 aaKnown RBP25.66■■□□□ 1.7
CLN3-254ENST00000637050 SETD1AO15047 1707 aaKnown RBP25.66■■□□□ 1.7
CLN3-254ENST00000637050 LTKP29376 864 aa25.63■■□□□ 1.69
CLN3-254ENST00000637050 SENP3Q9H4L4 574 aaPredicted RBP25.62■■□□□ 1.69
CLN3-254ENST00000637050 PLEKHG1Q9ULL1 1385 aa25.62■■□□□ 1.69
CLN3-254ENST00000637050 TRAK1Q9UPV9 953 aa25.62■■□□□ 1.69
CLN3-254ENST00000637050 DISP3Q9P2K9 1392 aa25.61■■□□□ 1.69
CLN3-254ENST00000637050 TMF1P82094 1093 aa25.61■■□□□ 1.69
CLN3-254ENST00000637050 TXNDC2Q86VQ3 553 aa25.61■■□□□ 1.69
CLN3-254ENST00000637050 SBNO2Q9Y2G9 1366 aa25.61■■□□□ 1.69
CLN3-254ENST00000637050 MIER1Q8N108 512 aa25.61■■□□□ 1.69
CLN3-254ENST00000637050 EID1Q9Y6B2 187 aa25.61■■□□□ 1.69
CLN3-254ENST00000637050 YTHDC2Q9H6S0 1430 aaKnown RBP25.6■■□□□ 1.69
CLN3-254ENST00000637050 ARHGEF28Q8N1W1 1705 aaKnown RBP25.6■■□□□ 1.69
CLN3-254ENST00000637050 CENPJQ9HC77 1338 aaPredicted RBP25.59■■□□□ 1.69
CLN3-254ENST00000637050 SLC24A1O60721 1099 aa25.58■■□□□ 1.69
CLN3-254ENST00000637050 ADAMTS13Q76LX8 1427 aa25.56■■□□□ 1.68
CLN3-254ENST00000637050 POLR3GLQ9BT43 218 aa25.55■■□□□ 1.68
CLN3-254ENST00000637050 QRICH2Q9H0J4 1663 aa25.55■■□□□ 1.68
CLN3-254ENST00000637050 LRPPRCP42704 1394 aaKnown RBP25.54■■□□□ 1.68
CLN3-254ENST00000637050 MED14O60244 1454 aa25.54■■□□□ 1.68
CLN3-254ENST00000637050 STK26Q9P289 416 aa25.53■■□□□ 1.68
CLN3-254ENST00000637050 METP08581 1390 aa25.53■■□□□ 1.68
CLN3-254ENST00000637050 DLC1Q96QB1 1528 aa25.52■■□□□ 1.68
CLN3-254ENST00000637050 CDCA8Q53HL2 280 aa25.52■■□□□ 1.68
CLN3-254ENST00000637050 BCANQ96GW7 911 aa25.52■■□□□ 1.68
CLN3-254ENST00000637050 ABCC11Q96J66 1382 aa25.51■■□□□ 1.67
CLN3-254ENST00000637050 KDM4FA0A1W2PPD8 638 aa25.49■■□□□ 1.67
CLN3-254ENST00000637050 DIP2AQ14689 1571 aa25.47■■□□□ 1.67
CLN3-254ENST00000637050 KNDC1Q76NI1 1749 aa25.47■■□□□ 1.67
CLN3-254ENST00000637050 ANKLE2Q86XL3 938 aa25.46■■□□□ 1.67
CLN3-254ENST00000637050 TECPR2O15040 1411 aa25.46■■□□□ 1.67
CLN3-254ENST00000637050 TBX22Q9Y458 520 aa25.45■■□□□ 1.67
CLN3-254ENST00000637050 PRAM1Q96QH2 718 aa25.45■■□□□ 1.66
CLN3-254ENST00000637050 ANP32CO43423 234 aa25.44■■□□□ 1.66
CLN3-254ENST00000637050 SIRT1Q96EB6 747 aa25.43■■□□□ 1.66
CLN3-254ENST00000637050 CPS1P31327 1500 aa25.42■■□□□ 1.66
CLN3-254ENST00000637050 SLC26A8Q96RN1 970 aa25.42■■□□□ 1.66
CLN3-254ENST00000637050 POGKQ9P215 609 aa25.42■■□□□ 1.66
CLN3-254ENST00000637050 TULP4Q9NRJ4 1543 aa25.41■■□□□ 1.66
CLN3-254ENST00000637050 FAM135BQ49AJ0 1406 aa25.4■■□□□ 1.66
CLN3-254ENST00000637050 MYOM1P52179 1685 aa25.4■■□□□ 1.66
CLN3-254ENST00000637050 EVC2Q86UK5 1308 aa25.39■■□□□ 1.65
CLN3-254ENST00000637050 SAFB2Q14151 953 aaKnown RBP eCLIP25.39■■□□□ 1.65
CLN3-254ENST00000637050 PUS7Q96PZ0 661 aaKnown RBP25.39■■□□□ 1.65
CLN3-254ENST00000637050 PTPRUQ92729 1446 aa25.38■■□□□ 1.65
CLN3-254ENST00000637050 PLEKHH1Q9ULM0 1364 aa25.37■■□□□ 1.65
CLN3-254ENST00000637050 WAPLQ7Z5K2 1190 aa25.36■■□□□ 1.65
CLN3-254ENST00000637050 PIK3R4Q99570 1358 aa25.35■■□□□ 1.65
CLN3-254ENST00000637050 MINK1Q8N4C8 1332 aaPredicted RBP25.34■■□□□ 1.65
CLN3-254ENST00000637050 PANK3Q9H999 370 aa25.33■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms