RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 CCDC7Q96M83 1385 aa23.62■■□□□ 1.37
CLN3-252ENST00000636907 ADGRF5Q8IZF2 1346 aa23.62■■□□□ 1.37
CLN3-252ENST00000636907 NRXN1Q9ULB1 1477 aa23.62■■□□□ 1.37
CLN3-252ENST00000636907 ZMYM3Q14202 1370 aa23.61■■□□□ 1.37
CLN3-252ENST00000636907 RPGRIP1LQ68CZ1 1315 aa23.61■■□□□ 1.37
CLN3-252ENST00000636907 KIAA1210Q9ULL0 1709 aa23.6■■□□□ 1.37
CLN3-252ENST00000636907 TMEM131LA2VDJ0 1609 aa23.59■■□□□ 1.37
CLN3-252ENST00000636907 ST20-MTHFSA0A0A6YYL1 179 aa23.59■■□□□ 1.37
CLN3-252ENST00000636907 KIF7Q2M1P5 1343 aa23.58■■□□□ 1.37
CLN3-252ENST00000636907 NEXMIFQ5QGS0 1516 aa23.57■■□□□ 1.36
CLN3-252ENST00000636907 MYO5BQ9ULV0 1848 aa23.56■■□□□ 1.36
CLN3-252ENST00000636907 IQGAP1P46940 1657 aa23.54■■□□□ 1.36
CLN3-252ENST00000636907 CFAP70Q5T0N1 1121 aa23.54■■□□□ 1.36
CLN3-252ENST00000636907 PIK3C2GO75747 1445 aa23.53■■□□□ 1.36
CLN3-252ENST00000636907 SCAF11Q99590 1463 aaKnown RBP23.5■■□□□ 1.35
CLN3-252ENST00000636907 NUTM2DQ5VT03 806 aaPredicted RBP23.49■■□□□ 1.35
CLN3-252ENST00000636907 VGFO15240 615 aaPredicted RBP23.48■■□□□ 1.35
CLN3-252ENST00000636907 FER1L4A9Z1Z3 1794 aa23.48■■□□□ 1.35
CLN3-252ENST00000636907 ZFYVE9O95405 1425 aa23.48■■□□□ 1.35
CLN3-252ENST00000636907 C14orf93Q9H972 538 aaKnown RBP23.47■■□□□ 1.35
CLN3-252ENST00000636907 STAG3Q9UJ98 1225 aa23.47■■□□□ 1.35
CLN3-252ENST00000636907 SETBP1Q9Y6X0 1596 aa23.47■■□□□ 1.35
CLN3-252ENST00000636907 A2ML1A8K2U0 1454 aa23.46■■□□□ 1.35
CLN3-252ENST00000636907 TNRQ92752 1358 aa23.46■■□□□ 1.35
CLN3-252ENST00000636907 TESK2Q96S53 571 aa23.46■■□□□ 1.35
CLN3-252ENST00000636907 POLR3GLQ9BT43 218 aa23.44■■□□□ 1.34
CLN3-252ENST00000636907 C3P01024 1663 aa23.43■■□□□ 1.34
CLN3-252ENST00000636907 ADGRB1O14514 1584 aa23.42■■□□□ 1.34
CLN3-252ENST00000636907 ANP32CO43423 234 aa23.41■■□□□ 1.34
CLN3-252ENST00000636907 CEBPAP49715 358 aaPredicted RBP23.41■■□□□ 1.34
CLN3-252ENST00000636907 EIF3AQ14152 1382 aaKnown RBP23.41■■□□□ 1.34
CLN3-252ENST00000636907 DISP3Q9P2K9 1392 aa23.39■■□□□ 1.34
CLN3-252ENST00000636907 RIMS2Q9UQ26 1411 aa23.37■■□□□ 1.33
CLN3-252ENST00000636907 TMEM132EQ6IEE7 984 aa23.36■■□□□ 1.33
CLN3-252ENST00000636907 KDM5AP29375 1690 aaKnown RBP23.36■■□□□ 1.33
CLN3-252ENST00000636907 TMF1P82094 1093 aa23.35■■□□□ 1.33
CLN3-252ENST00000636907 UBR1Q8IWV7 1749 aa23.35■■□□□ 1.33
CLN3-252ENST00000636907 MYO3AQ8NEV4 1616 aa23.34■■□□□ 1.33
CLN3-252ENST00000636907 NLRP1Q9C000 1473 aa23.33■■□□□ 1.33
CLN3-252ENST00000636907 ASXL1Q8IXJ9 1541 aa23.32■■□□□ 1.32
CLN3-252ENST00000636907 PLPPR3Q6T4P5 718 aa23.32■■□□□ 1.32
CLN3-252ENST00000636907 SENP3Q9H4L4 574 aaPredicted RBP23.32■■□□□ 1.32
CLN3-252ENST00000636907 RIMS1Q86UR5 1692 aaKnown RBP23.31■■□□□ 1.32
CLN3-252ENST00000636907 TRAK1Q9UPV9 953 aa23.3■■□□□ 1.32
CLN3-252ENST00000636907 ADAMTSL3P82987 1691 aa23.29■■□□□ 1.32
CLN3-252ENST00000636907 ALKQ9UM73 1620 aa23.29■■□□□ 1.32
CLN3-252ENST00000636907 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.28■■□□□ 1.32
CLN3-252ENST00000636907 TMEM2Q9UHN6 1383 aa23.27■■□□□ 1.32
CLN3-252ENST00000636907 CENPJQ9HC77 1338 aaPredicted RBP23.27■■□□□ 1.32
CLN3-252ENST00000636907 CCER2I3L3R5 266 aa23.27■■□□□ 1.32
CLN3-252ENST00000636907 YTHDC1Q96MU7 727 aaKnown RBP23.26■■□□□ 1.31
CLN3-252ENST00000636907 ARHGEF28Q8N1W1 1705 aaKnown RBP23.26■■□□□ 1.31
CLN3-252ENST00000636907 SBNO2Q9Y2G9 1366 aa23.25■■□□□ 1.31
CLN3-252ENST00000636907 QRICH2Q9H0J4 1663 aa23.24■■□□□ 1.31
CLN3-252ENST00000636907 PTPRMP28827 1452 aa23.24■■□□□ 1.31
CLN3-252ENST00000636907 NRXN3Q9Y4C0 1643 aa23.23■■□□□ 1.31
CLN3-252ENST00000636907 SLC24A1O60721 1099 aa23.23■■□□□ 1.31
CLN3-252ENST00000636907 HDGFP51858 240 aaKnown RBP23.23■■□□□ 1.31
CLN3-252ENST00000636907 CDCA8Q53HL2 280 aa23.23■■□□□ 1.31
CLN3-252ENST00000636907 PRKRIP1Q9H875 184 aaPredicted RBP23.23■■□□□ 1.31
CLN3-252ENST00000636907 SETD1AO15047 1707 aaKnown RBP23.23■■□□□ 1.31
CLN3-252ENST00000636907 YTHDC2Q9H6S0 1430 aaKnown RBP23.22■■□□□ 1.31
CLN3-252ENST00000636907 STK26Q9P289 416 aa23.19■■□□□ 1.3
CLN3-252ENST00000636907 SLIT1O75093 1534 aa23.17■■□□□ 1.3
CLN3-252ENST00000636907 MYOM1P52179 1685 aa23.17■■□□□ 1.3
CLN3-252ENST00000636907 ARHGAP23Q9P227 1491 aa23.16■■□□□ 1.3
CLN3-252ENST00000636907 LTKP29376 864 aa23.16■■□□□ 1.3
CLN3-252ENST00000636907 PANK3Q9H999 370 aa23.16■■□□□ 1.3
CLN3-252ENST00000636907 CEP170BQ9Y4F5 1589 aaPredicted RBP23.14■■□□□ 1.3
CLN3-252ENST00000636907 PER1O15534 1290 aaPredicted RBP23.13■■□□□ 1.29
CLN3-252ENST00000636907 LRPPRCP42704 1394 aaKnown RBP23.13■■□□□ 1.29
CLN3-252ENST00000636907 TXNDC2Q86VQ3 553 aa23.13■■□□□ 1.29
CLN3-252ENST00000636907 THEMISQ8N1K5 641 aaPredicted RBP23.13■■□□□ 1.29
CLN3-252ENST00000636907 PLEKHG1Q9ULL1 1385 aa23.12■■□□□ 1.29
CLN3-252ENST00000636907 CNGB1Q14028 1251 aaPredicted RBP23.12■■□□□ 1.29
CLN3-252ENST00000636907 METP08581 1390 aa23.12■■□□□ 1.29
CLN3-252ENST00000636907 BCANQ96GW7 911 aa23.11■■□□□ 1.29
CLN3-252ENST00000636907 DLC1Q96QB1 1528 aa23.11■■□□□ 1.29
CLN3-252ENST00000636907 TULP4Q9NRJ4 1543 aa23.11■■□□□ 1.29
CLN3-252ENST00000636907 SAFB2Q14151 953 aaKnown RBP eCLIP23.1■■□□□ 1.29
CLN3-252ENST00000636907 PRAM1Q96QH2 718 aa23.1■■□□□ 1.29
CLN3-252ENST00000636907 EID1Q9Y6B2 187 aa23.1■■□□□ 1.29
CLN3-252ENST00000636907 ADAMTS13Q76LX8 1427 aa23.1■■□□□ 1.29
CLN3-252ENST00000636907 ABCC11Q96J66 1382 aa23.08■■□□□ 1.29
CLN3-252ENST00000636907 CENPBP07199 599 aaPredicted RBP23.08■■□□□ 1.29
CLN3-252ENST00000636907 POGKQ9P215 609 aa23.08■■□□□ 1.29
CLN3-252ENST00000636907 ZNF142P52746 1687 aaPredicted RBP23.08■■□□□ 1.28
CLN3-252ENST00000636907 CCDC184Q52MB2 194 aa23.07■■□□□ 1.28
CLN3-252ENST00000636907 EVC2Q86UK5 1308 aa23.07■■□□□ 1.28
CLN3-252ENST00000636907 KNDC1Q76NI1 1749 aa23.05■■□□□ 1.28
CLN3-252ENST00000636907 KTN1Q86UP2 1357 aaKnown RBP23.05■■□□□ 1.28
CLN3-252ENST00000636907 MED14O60244 1454 aa23.04■■□□□ 1.28
CLN3-252ENST00000636907 PUS7Q96PZ0 661 aaKnown RBP23.03■■□□□ 1.28
CLN3-252ENST00000636907 MINK1Q8N4C8 1332 aaPredicted RBP23.03■■□□□ 1.28
CLN3-252ENST00000636907 RALBP1Q15311 655 aa23.03■■□□□ 1.28
CLN3-252ENST00000636907 PLEKHH1Q9ULM0 1364 aa23.02■■□□□ 1.28
CLN3-252ENST00000636907 TECPR2O15040 1411 aa23.02■■□□□ 1.28
CLN3-252ENST00000636907 SETD1BQ9UPS6 1966 aaKnown RBP23.02■■□□□ 1.28
CLN3-252ENST00000636907 PARD3Q8TEW0 1356 aa23.02■■□□□ 1.28
CLN3-252ENST00000636907 WAPLQ7Z5K2 1190 aa23.01■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms