RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 ERBINQ96RT1 1412 aa23.25■■□□□ 1.31
CLN3-249ENST00000636685 CDK12Q9NYV4 1490 aaPredicted RBP23.24■■□□□ 1.31
CLN3-249ENST00000636685 AHDC1Q5TGY3 1603 aaPredicted RBP23.24■■□□□ 1.31
CLN3-249ENST00000636685 RRP7BPQ9NSQ0 103 aa23.23■■□□□ 1.31
CLN3-249ENST00000636685 NUTM2BA6NNL0 878 aaPredicted RBP23.22■■□□□ 1.31
CLN3-249ENST00000636685 NUTM2EB1AL46 878 aaPredicted RBP23.22■■□□□ 1.31
CLN3-249ENST00000636685 NUTM2AQ8IVF1 878 aaPredicted RBP23.22■■□□□ 1.31
CLN3-249ENST00000636685 KANK1Q14678 1352 aa23.21■■□□□ 1.31
CLN3-249ENST00000636685 MYOM3Q5VTT5 1437 aa23.21■■□□□ 1.31
CLN3-249ENST00000636685 MYO5BQ9ULV0 1848 aa23.2■■□□□ 1.3
CLN3-249ENST00000636685 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.2■■□□□ 1.3
CLN3-249ENST00000636685 AFF2P51816 1311 aa23.19■■□□□ 1.3
CLN3-249ENST00000636685 C14orf37Q86TY3 774 aa23.19■■□□□ 1.3
CLN3-249ENST00000636685 CROCC2H7BZ55 1655 aa23.19■■□□□ 1.3
CLN3-249ENST00000636685 LMTK2Q8IWU2 1503 aa23.18■■□□□ 1.3
CLN3-249ENST00000636685 NOS1P29475 1434 aa23.18■■□□□ 1.3
CLN3-249ENST00000636685 DIP2AQ14689 1571 aa23.18■■□□□ 1.3
CLN3-249ENST00000636685 PLEKHG1Q9ULL1 1385 aa23.16■■□□□ 1.3
CLN3-249ENST00000636685 RGS12O14924 1447 aa23.16■■□□□ 1.3
CLN3-249ENST00000636685 ZFYVE9O95405 1425 aa23.16■■□□□ 1.3
CLN3-249ENST00000636685 NCOA3Q9Y6Q9 1424 aa23.16■■□□□ 1.3
CLN3-249ENST00000636685 CADPS2Q86UW7 1296 aa23.14■■□□□ 1.29
CLN3-249ENST00000636685 ABCC5O15440 1437 aa23.14■■□□□ 1.29
CLN3-249ENST00000636685 ATF3P18847 181 aa23.13■■□□□ 1.29
CLN3-249ENST00000636685 SLC52A1Q9NWF4 448 aa23.13■■□□□ 1.29
CLN3-249ENST00000636685 PPP1R15AO75807 674 aaPredicted RBP23.12■■□□□ 1.29
CLN3-249ENST00000636685 C19orf44Q9H6X5 657 aa23.12■■□□□ 1.29
CLN3-249ENST00000636685 RIMS2Q9UQ26 1411 aa23.11■■□□□ 1.29
CLN3-249ENST00000636685 KANK4Q5T7N3 995 aaPredicted RBP23.11■■□□□ 1.29
CLN3-249ENST00000636685 BRINP3Q76B58 766 aa23.11■■□□□ 1.29
CLN3-249ENST00000636685 TBX22Q9Y458 520 aa23.11■■□□□ 1.29
CLN3-249ENST00000636685 GCC2Q8IWJ2 1684 aa23.1■■□□□ 1.29
CLN3-249ENST00000636685 NUTM2DQ5VT03 806 aaPredicted RBP23.09■■□□□ 1.29
CLN3-249ENST00000636685 QTRT2Q9H974 415 aaKnown RBP23.09■■□□□ 1.29
CLN3-249ENST00000636685 RBM6P78332 1123 aaKnown RBP23.08■■□□□ 1.29
CLN3-249ENST00000636685 C8orf37Q96NL8 207 aa23.06■■□□□ 1.28
CLN3-249ENST00000636685 TMEM131LA2VDJ0 1609 aa23.05■■□□□ 1.28
CLN3-249ENST00000636685 ADAMTS13Q76LX8 1427 aa23.05■■□□□ 1.28
CLN3-249ENST00000636685 HDGFP51858 240 aaKnown RBP23.04■■□□□ 1.28
CLN3-249ENST00000636685 DAPK1P53355 1430 aa23.04■■□□□ 1.28
CLN3-249ENST00000636685 ASXL1Q8IXJ9 1541 aa23.03■■□□□ 1.28
CLN3-249ENST00000636685 SETD5Q9C0A6 1442 aa23.03■■□□□ 1.28
CLN3-249ENST00000636685 CHIC2Q9UKJ5 165 aa23.03■■□□□ 1.28
CLN3-249ENST00000636685 PTPN23Q9H3S7 1636 aa23.03■■□□□ 1.28
CLN3-249ENST00000636685 NHSL1Q5SYE7 1610 aa23.02■■□□□ 1.28
CLN3-249ENST00000636685 SETBP1Q9Y6X0 1596 aa23■■□□□ 1.27
CLN3-249ENST00000636685 VPS8Q8N3P4 1428 aa22.99■■□□□ 1.27
CLN3-249ENST00000636685 ZRANB1Q9UGI0 708 aa22.99■■□□□ 1.27
CLN3-249ENST00000636685 ATAD2Q6PL18 1390 aa22.99■■□□□ 1.27
CLN3-249ENST00000636685 ANKRD30AQ9BXX3 1397 aa22.99■■□□□ 1.27
CLN3-249ENST00000636685 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.98■■□□□ 1.27
CLN3-249ENST00000636685 PIK3R4Q99570 1358 aa22.98■■□□□ 1.27
CLN3-249ENST00000636685 RPRD2Q5VT52 1461 aaKnown RBP22.98■■□□□ 1.27
CLN3-249ENST00000636685 CHGAP10645 457 aaKnown RBP22.97■■□□□ 1.27
CLN3-249ENST00000636685 LRRC59Q96AG4 307 aaKnown RBP22.97■■□□□ 1.27
CLN3-249ENST00000636685 AMOTL2Q9Y2J4 779 aa22.97■■□□□ 1.27
CLN3-249ENST00000636685 PTPRUQ92729 1446 aa22.97■■□□□ 1.27
CLN3-249ENST00000636685 DDX17Q92841 729 aaKnown RBP22.96■■□□□ 1.27
CLN3-249ENST00000636685 PNPLA6Q8IY17 1366 aa22.96■■□□□ 1.27
CLN3-249ENST00000636685 MST1RQ04912 1400 aa22.95■■□□□ 1.26
CLN3-249ENST00000636685 TRPM2O94759 1503 aa22.94■■□□□ 1.26
CLN3-249ENST00000636685 DCCP43146 1447 aa22.94■■□□□ 1.26
CLN3-249ENST00000636685 NGLY1Q96IV0 654 aa22.94■■□□□ 1.26
CLN3-249ENST00000636685 ADAMTS2O95450 1211 aa22.93■■□□□ 1.26
CLN3-249ENST00000636685 FOXD1Q16676 465 aa22.91■■□□□ 1.26
CLN3-249ENST00000636685 EP400Q96L91 3159 aa22.89■■□□□ 1.25
CLN3-249ENST00000636685 UNC13BO14795 1591 aa22.89■■□□□ 1.25
CLN3-249ENST00000636685 XRN1Q8IZH2 1706 aaKnown RBP22.88■■□□□ 1.25
CLN3-249ENST00000636685 USP21Q9UK80 565 aa22.86■■□□□ 1.25
CLN3-249ENST00000636685 TRPC5Q9UL62 973 aaPredicted RBP22.84■■□□□ 1.25
CLN3-249ENST00000636685 NRXN3Q9Y4C0 1643 aa22.83■■□□□ 1.25
CLN3-249ENST00000636685 ADGRL2O95490 1459 aa22.83■■□□□ 1.25
CLN3-249ENST00000636685 E9PCH4 1651 aa22.82■■□□□ 1.24
CLN3-249ENST00000636685 ANKRD50Q9ULJ7 1429 aa22.82■■□□□ 1.24
CLN3-249ENST00000636685 ATRNO75882 1429 aa22.81■■□□□ 1.24
CLN3-249ENST00000636685 NALCNQ8IZF0 1738 aa22.8■■□□□ 1.24
CLN3-249ENST00000636685 ADGRL3Q9HAR2 1447 aa22.79■■□□□ 1.24
CLN3-249ENST00000636685 CCDC125Q86Z20 511 aa22.78■■□□□ 1.24
CLN3-249ENST00000636685 FNBP4Q8N3X1 1017 aaPredicted RBP22.78■■□□□ 1.24
CLN3-249ENST00000636685 LAMC1P11047 1609 aa22.76■■□□□ 1.23
CLN3-249ENST00000636685 METP08581 1390 aa22.76■■□□□ 1.23
CLN3-249ENST00000636685 PTCH1Q13635 1447 aa22.75■■□□□ 1.23
CLN3-249ENST00000636685 C1orf167Q5SNV9 1468 aa22.75■■□□□ 1.23
CLN3-249ENST00000636685 SOS2Q07890 1332 aaPredicted RBP22.73■■□□□ 1.23
CLN3-249ENST00000636685 ORAI2Q96SN7 254 aa22.7■■□□□ 1.22
CLN3-249ENST00000636685 COL22A1Q8NFW1 1626 aaPredicted RBP22.69■■□□□ 1.22
CLN3-249ENST00000636685 BCL9LQ86UU0 1499 aa22.69■■□□□ 1.22
CLN3-249ENST00000636685 LOC105371045A0A1W2PR82 267 aa22.68■■□□□ 1.22
CLN3-249ENST00000636685 MARF1Q9Y4F3 1742 aaKnown RBP22.68■■□□□ 1.22
CLN3-249ENST00000636685 LRP5O75197 1615 aa22.68■■□□□ 1.22
CLN3-249ENST00000636685 IQGAP3Q86VI3 1631 aa22.68■■□□□ 1.22
CLN3-249ENST00000636685 APLP2Q06481 763 aa22.67■■□□□ 1.22
CLN3-249ENST00000636685 FAM50AQ14320 339 aaKnown RBP22.67■■□□□ 1.22
CLN3-249ENST00000636685 DEFB132Q7Z7B7 95 aa22.66■■□□□ 1.22
CLN3-249ENST00000636685 BLMP54132 1417 aaPredicted RBP22.65■■□□□ 1.22
CLN3-249ENST00000636685 GJD4Q96KN9 370 aaPredicted RBP22.65■■□□□ 1.22
CLN3-249ENST00000636685 MYOM2P54296 1465 aa22.65■■□□□ 1.22
CLN3-249ENST00000636685 BRWD3Q6RI45 1802 aa22.64■■□□□ 1.21
CLN3-249ENST00000636685 ZNF326Q5BKZ1 582 aaKnown RBP22.63■■□□□ 1.21
CLN3-249ENST00000636685 GLI3P10071 1580 aa22.59■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms