RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 KNSTRNQ9Y448 316 aa16.96■□□□□ 0.31
LINC00540-203ENST00000631321 EIF3AQ14152 1382 aaKnown RBP16.96■□□□□ 0.31
LINC00540-203ENST00000631321 MROH1Q8NDA8 1641 aa16.95■□□□□ 0.3
LINC00540-203ENST00000631321 MYOM2P54296 1465 aa16.95■□□□□ 0.3
LINC00540-203ENST00000631321 PPP2R1AP30153 589 aa16.95■□□□□ 0.3
LINC00540-203ENST00000631321 ASXL1Q8IXJ9 1541 aa16.94■□□□□ 0.3
LINC00540-203ENST00000631321 PIK3C2GO75747 1445 aa16.94■□□□□ 0.3
LINC00540-203ENST00000631321 ADGRL1O94910 1474 aa16.93■□□□□ 0.3
LINC00540-203ENST00000631321 ADAMTS8Q9UP79 889 aa16.92■□□□□ 0.3
LINC00540-203ENST00000631321 SLC24A1O60721 1099 aa16.92■□□□□ 0.3
LINC00540-203ENST00000631321 MYOM1P52179 1685 aa16.91■□□□□ 0.3
LINC00540-203ENST00000631321 TCERG1O14776 1098 aaKnown RBP16.91■□□□□ 0.3
LINC00540-203ENST00000631321 KIF3BO15066 747 aa16.91■□□□□ 0.3
LINC00540-203ENST00000631321 NOP58Q9Y2X3 529 aaKnown RBP16.91■□□□□ 0.3
LINC00540-203ENST00000631321 LMTK2Q8IWU2 1503 aa16.9■□□□□ 0.3
LINC00540-203ENST00000631321 EFCAB6Q5THR3 1501 aa16.9■□□□□ 0.3
LINC00540-203ENST00000631321 MAP3K4Q9Y6R4 1608 aa16.9■□□□□ 0.3
LINC00540-203ENST00000631321 ZNF521Q96K83 1311 aa16.89■□□□□ 0.29
LINC00540-203ENST00000631321 NRXN1Q9ULB1 1477 aa16.88■□□□□ 0.29
LINC00540-203ENST00000631321 MYT1LQ9UL68 1186 aa16.88■□□□□ 0.29
LINC00540-203ENST00000631321 ANP32AP39687 249 aaKnown RBP16.87■□□□□ 0.29
LINC00540-203ENST00000631321 WDR43Q15061 677 aaKnown RBP eCLIP16.87■□□□□ 0.29
LINC00540-203ENST00000631321 ASXL2Q76L83 1435 aa16.87■□□□□ 0.29
LINC00540-203ENST00000631321 PLEKHH1Q9ULM0 1364 aa16.87■□□□□ 0.29
LINC00540-203ENST00000631321 ABCA6Q8N139 1617 aa16.87■□□□□ 0.29
LINC00540-203ENST00000631321 MS4A1P11836 297 aa16.87■□□□□ 0.29
LINC00540-203ENST00000631321 IPO9Q96P70 1041 aaKnown RBP16.87■□□□□ 0.29
LINC00540-203ENST00000631321 KDM5AP29375 1690 aaKnown RBP16.87■□□□□ 0.29
LINC00540-203ENST00000631321 ERVK-7P63135 1459 aa16.86■□□□□ 0.29
LINC00540-203ENST00000631321 UGGT1Q9NYU2 1555 aa16.85■□□□□ 0.29
LINC00540-203ENST00000631321 SBNO2Q9Y2G9 1366 aa16.85■□□□□ 0.29
LINC00540-203ENST00000631321 IFT172Q9UG01 1749 aa16.85■□□□□ 0.29
LINC00540-203ENST00000631321 CFAP70Q5T0N1 1121 aa16.85■□□□□ 0.29
LINC00540-203ENST00000631321 DUSP27Q5VZP5 1158 aa16.85■□□□□ 0.29
LINC00540-203ENST00000631321 KIDINS220Q9ULH0 1771 aa16.84■□□□□ 0.29
LINC00540-203ENST00000631321 ADGRF5Q8IZF2 1346 aa16.84■□□□□ 0.29
LINC00540-203ENST00000631321 PLIN1O60240 522 aa16.84■□□□□ 0.29
LINC00540-203ENST00000631321 PPRC1Q5VV67 1664 aaKnown RBP16.83■□□□□ 0.29
LINC00540-203ENST00000631321 MYO3AQ8NEV4 1616 aa16.83■□□□□ 0.28
LINC00540-203ENST00000631321 CRBNQ96SW2 442 aa16.83■□□□□ 0.28
LINC00540-203ENST00000631321 ZNF518AQ6AHZ1 1483 aa16.83■□□□□ 0.28
LINC00540-203ENST00000631321 PAK3O75914 559 aaPredicted RBP16.82■□□□□ 0.28
LINC00540-203ENST00000631321 KIF1BO60333 1816 aa16.82■□□□□ 0.28
LINC00540-203ENST00000631321 ADGRB3O60242 1522 aa16.82■□□□□ 0.28
LINC00540-203ENST00000631321 GOLGA2Q08379 1002 aa16.81■□□□□ 0.28
LINC00540-203ENST00000631321 TRMT2AQ8IZ69 625 aaKnown RBP16.8■□□□□ 0.28
LINC00540-203ENST00000631321 SETBP1Q9Y6X0 1596 aa16.8■□□□□ 0.28
LINC00540-203ENST00000631321 PDE4AP27815 886 aa16.79■□□□□ 0.28
LINC00540-203ENST00000631321 BACH2Q9BYV9 841 aa16.79■□□□□ 0.28
LINC00540-203ENST00000631321 MROH2AA6NES4 1674 aa16.79■□□□□ 0.28
LINC00540-203ENST00000631321 SLFN5Q08AF3 891 aa16.79■□□□□ 0.28
LINC00540-203ENST00000631321 CARD14Q9BXL6 1004 aa16.78■□□□□ 0.28
LINC00540-203ENST00000631321 NGEFQ8N5V2 710 aa16.77■□□□□ 0.28
LINC00540-203ENST00000631321 C20orf194Q5TEA3 1177 aa16.77■□□□□ 0.27
LINC00540-203ENST00000631321 MLH3Q9UHC1 1453 aa16.77■□□□□ 0.27
LINC00540-203ENST00000631321 ZBTB47Q9UFB7 747 aaPredicted RBP16.76■□□□□ 0.27
LINC00540-203ENST00000631321 KDM2BQ8NHM5 1336 aa16.76■□□□□ 0.27
LINC00540-203ENST00000631321 NOS1P29475 1434 aa16.76■□□□□ 0.27
LINC00540-203ENST00000631321 POGZQ7Z3K3 1410 aa16.76■□□□□ 0.27
LINC00540-203ENST00000631321 FRMPD1Q5SYB0 1578 aa16.75■□□□□ 0.27
LINC00540-203ENST00000631321 NPATQ14207 1427 aa16.75■□□□□ 0.27
LINC00540-203ENST00000631321 CFAP74Q9C0B2 1584 aa16.75■□□□□ 0.27
LINC00540-203ENST00000631321 CENPJQ9HC77 1338 aaPredicted RBP16.74■□□□□ 0.27
LINC00540-203ENST00000631321 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.74■□□□□ 0.27
LINC00540-203ENST00000631321 POLR3AO14802 1390 aaPredicted RBP16.74■□□□□ 0.27
LINC00540-203ENST00000631321 C14orf93Q9H972 538 aaKnown RBP16.73■□□□□ 0.27
LINC00540-203ENST00000631321 RPGRIP1LQ68CZ1 1315 aa16.73■□□□□ 0.27
LINC00540-203ENST00000631321 ADGRB1O14514 1584 aa16.72■□□□□ 0.27
LINC00540-203ENST00000631321 NKTRP30414 1462 aaKnown RBP16.72■□□□□ 0.27
LINC00540-203ENST00000631321 APAF1O14727 1248 aa16.71■□□□□ 0.27
LINC00540-203ENST00000631321 CD109Q6YHK3 1445 aa16.71■□□□□ 0.27
LINC00540-203ENST00000631321 CENPQQ7L2Z9 268 aaPredicted RBP16.71■□□□□ 0.27
LINC00540-203ENST00000631321 CCDC146Q8IYE0 955 aa16.71■□□□□ 0.27
LINC00540-203ENST00000631321 PPLO60437 1756 aa16.71■□□□□ 0.27
LINC00540-203ENST00000631321 HECW2Q9P2P5 1572 aa16.71■□□□□ 0.26
LINC00540-203ENST00000631321 E9PSI1 815 aa16.7■□□□□ 0.26
LINC00540-203ENST00000631321 ZC3H13Q5T200 1668 aaKnown RBP16.69■□□□□ 0.26
LINC00540-203ENST00000631321 ABCC3O15438 1527 aa16.69■□□□□ 0.26
LINC00540-203ENST00000631321 SPINK5Q9NQ38 1064 aaPredicted RBP16.69■□□□□ 0.26
LINC00540-203ENST00000631321 NPM1P06748 294 aaKnown RBP eCLIP16.68■□□□□ 0.26
LINC00540-203ENST00000631321 PUS7Q96PZ0 661 aaKnown RBP16.67■□□□□ 0.26
LINC00540-203ENST00000631321 NSD3Q9BZ95 1437 aa16.67■□□□□ 0.26
LINC00540-203ENST00000631321 BCL11AQ9H165 835 aa16.67■□□□□ 0.26
LINC00540-203ENST00000631321 USP32Q8NFA0 1604 aa16.67■□□□□ 0.26
LINC00540-203ENST00000631321 QRICH2Q9H0J4 1663 aa16.65■□□□□ 0.26
LINC00540-203ENST00000631321 TRAK1Q9UPV9 953 aa16.65■□□□□ 0.26
LINC00540-203ENST00000631321 CHGAP10645 457 aaKnown RBP16.65■□□□□ 0.26
LINC00540-203ENST00000631321 NPM2Q86SE8 214 aaKnown RBP16.65■□□□□ 0.26
LINC00540-203ENST00000631321 NBR1Q14596 966 aa16.64■□□□□ 0.25
LINC00540-203ENST00000631321 GGT6Q6P531 493 aa16.64■□□□□ 0.25
LINC00540-203ENST00000631321 SKAP1Q86WV1 359 aa16.64■□□□□ 0.25
LINC00540-203ENST00000631321 NEO1Q92859 1461 aa16.63■□□□□ 0.25
LINC00540-203ENST00000631321 PIK3C2BO00750 1634 aa16.63■□□□□ 0.25
LINC00540-203ENST00000631321 DEKP35659 375 aaKnown RBP16.63■□□□□ 0.25
LINC00540-203ENST00000631321 SHPRHQ149N8 1683 aa16.63■□□□□ 0.25
LINC00540-203ENST00000631321 MORC1Q86VD1 984 aa16.62■□□□□ 0.25
LINC00540-203ENST00000631321 DMRT2Q9Y5R5 561 aa16.62■□□□□ 0.25
LINC00540-203ENST00000631321 NINLQ9Y2I6 1382 aa16.62■□□□□ 0.25
LINC00540-203ENST00000631321 WWC1Q8IX03 1113 aa16.62■□□□□ 0.25
LINC00540-203ENST00000631321 SLC12A5Q9H2X9 1139 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 104.4 ms