RNA–Protein interactions for RNA: ENST00000627000.1

CHRNA4-209, Transcript of cholinergic receptor nicotinic alpha 4 subunit, humanhuman

TSL 1 (best)

Gene CHRNA4, Length 2,192 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4-209ENST00000627000 SCAF11Q99590 1463 aaKnown RBP26.93■■□□□ 1.9
CHRNA4-209ENST00000627000 CFAP70Q5T0N1 1121 aa26.92■■□□□ 1.9
CHRNA4-209ENST00000627000 NOS1P29475 1434 aa26.91■■□□□ 1.9
CHRNA4-209ENST00000627000 TMF1P82094 1093 aa26.91■■□□□ 1.9
CHRNA4-209ENST00000627000 ZC3H13Q5T200 1668 aaKnown RBP26.9■■□□□ 1.9
CHRNA4-209ENST00000627000 KIF13AQ9H1H9 1805 aa26.89■■□□□ 1.9
CHRNA4-209ENST00000627000 SYNMO15061 1565 aa26.89■■□□□ 1.89
CHRNA4-209ENST00000627000 NRXN1Q9ULB1 1477 aa26.88■■□□□ 1.89
CHRNA4-209ENST00000627000 PPLO60437 1756 aa26.86■■□□□ 1.89
CHRNA4-209ENST00000627000 ARHGAP31Q2M1Z3 1444 aa26.85■■□□□ 1.89
CHRNA4-209ENST00000627000 PIK3C2BO00750 1634 aa26.85■■□□□ 1.89
CHRNA4-209ENST00000627000 PER1O15534 1290 aaPredicted RBP26.83■■□□□ 1.89
CHRNA4-209ENST00000627000 SUPT16HQ9Y5B9 1047 aaKnown RBP26.82■■□□□ 1.88
CHRNA4-209ENST00000627000 PANK3Q9H999 370 aa26.8■■□□□ 1.88
CHRNA4-209ENST00000627000 MYT1Q01538 1121 aa26.79■■□□□ 1.88
CHRNA4-209ENST00000627000 EIF3AQ14152 1382 aaKnown RBP26.79■■□□□ 1.88
CHRNA4-209ENST00000627000 RALBP1Q15311 655 aa26.77■■□□□ 1.88
CHRNA4-209ENST00000627000 PIK3C2GO75747 1445 aa26.77■■□□□ 1.88
CHRNA4-209ENST00000627000 PREX1Q8TCU6 1659 aa26.77■■□□□ 1.88
CHRNA4-209ENST00000627000 IDI1Q13907 227 aa26.77■■□□□ 1.88
CHRNA4-209ENST00000627000 KTN1Q86UP2 1357 aaKnown RBP26.76■■□□□ 1.87
CHRNA4-209ENST00000627000 REREQ9P2R6 1566 aa26.76■■□□□ 1.87
CHRNA4-209ENST00000627000 RPGRIP1LQ68CZ1 1315 aa26.75■■□□□ 1.87
CHRNA4-209ENST00000627000 MYBBP1AQ9BQG0 1328 aaKnown RBP26.75■■□□□ 1.87
CHRNA4-209ENST00000627000 NUTM2DQ5VT03 806 aaPredicted RBP26.74■■□□□ 1.87
CHRNA4-209ENST00000627000 PARD3Q8TEW0 1356 aa26.74■■□□□ 1.87
CHRNA4-209ENST00000627000 TMC1Q8TDI8 760 aa26.73■■□□□ 1.87
CHRNA4-209ENST00000627000 SETBP1Q9Y6X0 1596 aa26.73■■□□□ 1.87
CHRNA4-209ENST00000627000 AGLP35573 1532 aa26.73■■□□□ 1.87
CHRNA4-209ENST00000627000 NEXMIFQ5QGS0 1516 aa26.73■■□□□ 1.87
CHRNA4-209ENST00000627000 C14orf93Q9H972 538 aaKnown RBP26.72■■□□□ 1.87
CHRNA4-209ENST00000627000 MYO5BQ9ULV0 1848 aa26.71■■□□□ 1.87
CHRNA4-209ENST00000627000 FBXO31Q5XUX0 539 aaPredicted RBP26.71■■□□□ 1.87
CHRNA4-209ENST00000627000 CC2D1BQ5T0F9 858 aaKnown RBP26.71■■□□□ 1.87
CHRNA4-209ENST00000627000 PNISRQ8TF01 805 aaKnown RBP26.71■■□□□ 1.87
CHRNA4-209ENST00000627000 CDCA8Q53HL2 280 aa26.69■■□□□ 1.86
CHRNA4-209ENST00000627000 SLC52A1Q9NWF4 448 aa26.69■■□□□ 1.86
CHRNA4-209ENST00000627000 BRD4O60885 1362 aaPredicted RBP26.69■■□□□ 1.86
CHRNA4-209ENST00000627000 ADGRB1O14514 1584 aa26.68■■□□□ 1.86
CHRNA4-209ENST00000627000 MYOM1P52179 1685 aa26.68■■□□□ 1.86
CHRNA4-209ENST00000627000 TMEM132EQ6IEE7 984 aa26.68■■□□□ 1.86
CHRNA4-209ENST00000627000 MYO3AQ8NEV4 1616 aa26.68■■□□□ 1.86
CHRNA4-209ENST00000627000 ZBED9Q6R2W3 1325 aa26.68■■□□□ 1.86
CHRNA4-209ENST00000627000 CLTCQ00610 1675 aaKnown RBP26.67■■□□□ 1.86
CHRNA4-209ENST00000627000 ERVK-7P63135 1459 aa26.67■■□□□ 1.86
CHRNA4-209ENST00000627000 KDM5AP29375 1690 aaKnown RBP26.67■■□□□ 1.86
CHRNA4-209ENST00000627000 ARHGEF40Q8TER5 1519 aa26.66■■□□□ 1.86
CHRNA4-209ENST00000627000 MLECQ14165 292 aa26.65■■□□□ 1.86
CHRNA4-209ENST00000627000 FKBP8Q14318 412 aa26.65■■□□□ 1.86
CHRNA4-209ENST00000627000 TRAK1Q9UPV9 953 aa26.65■■□□□ 1.86
CHRNA4-209ENST00000627000 TMEM131LA2VDJ0 1609 aa26.65■■□□□ 1.86
CHRNA4-209ENST00000627000 VGFO15240 615 aaPredicted RBP26.64■■□□□ 1.85
CHRNA4-209ENST00000627000 NLRP13Q86W25 1043 aa26.63■■□□□ 1.85
CHRNA4-209ENST00000627000 CENPJQ9HC77 1338 aaPredicted RBP26.61■■□□□ 1.85
CHRNA4-209ENST00000627000 SENP3Q9H4L4 574 aaPredicted RBP26.6■■□□□ 1.85
CHRNA4-209ENST00000627000 PPP6R1Q9UPN7 881 aa26.6■■□□□ 1.85
CHRNA4-209ENST00000627000 LRPPRCP42704 1394 aaKnown RBP26.6■■□□□ 1.85
CHRNA4-209ENST00000627000 SENP3-EIF4A1A0A087X0R7 540 aa26.59■■□□□ 1.85
CHRNA4-209ENST00000627000 KNSTRNQ9Y448 316 aa26.58■■□□□ 1.85
CHRNA4-209ENST00000627000 QRICH2Q9H0J4 1663 aa26.58■■□□□ 1.85
CHRNA4-209ENST00000627000 SBNO2Q9Y2G9 1366 aa26.58■■□□□ 1.85
CHRNA4-209ENST00000627000 SLC24A1O60721 1099 aa26.57■■□□□ 1.84
CHRNA4-209ENST00000627000 NEFLP07196 543 aa26.56■■□□□ 1.84
CHRNA4-209ENST00000627000 ZFYVE9O95405 1425 aa26.56■■□□□ 1.84
CHRNA4-209ENST00000627000 AMER1Q5JTC6 1135 aaPredicted RBP26.56■■□□□ 1.84
CHRNA4-209ENST00000627000 BCANQ96GW7 911 aa26.56■■□□□ 1.84
CHRNA4-209ENST00000627000 SPATA31D1Q6ZQQ2 1576 aa26.52■■□□□ 1.84
CHRNA4-209ENST00000627000 ARHGEF28Q8N1W1 1705 aaKnown RBP26.52■■□□□ 1.84
CHRNA4-209ENST00000627000 ASXL1Q8IXJ9 1541 aa26.52■■□□□ 1.84
CHRNA4-209ENST00000627000 STAG3Q9UJ98 1225 aa26.49■■□□□ 1.83
CHRNA4-209ENST00000627000 CARD14Q9BXL6 1004 aa26.46■■□□□ 1.83
CHRNA4-209ENST00000627000 PPP2R1AP30153 589 aa26.44■■□□□ 1.82
CHRNA4-209ENST00000627000 STK26Q9P289 416 aa26.44■■□□□ 1.82
CHRNA4-209ENST00000627000 A2ML1A8K2U0 1454 aa26.44■■□□□ 1.82
CHRNA4-209ENST00000627000 ZMYM3Q14202 1370 aa26.43■■□□□ 1.82
CHRNA4-209ENST00000627000 NPC1L1Q9UHC9 1359 aa26.42■■□□□ 1.82
CHRNA4-209ENST00000627000 IRX6P78412 446 aaPredicted RBP26.42■■□□□ 1.82
CHRNA4-209ENST00000627000 ESF1Q9H501 851 aaKnown RBP26.42■■□□□ 1.82
CHRNA4-209ENST00000627000 SAFB2Q14151 953 aaKnown RBP eCLIP26.41■■□□□ 1.82
CHRNA4-209ENST00000627000 TULP4Q9NRJ4 1543 aa26.41■■□□□ 1.82
CHRNA4-209ENST00000627000 SMG6Q86US8 1419 aaKnown RBP26.4■■□□□ 1.82
CHRNA4-209ENST00000627000 SLC12A5Q9H2X9 1139 aa26.4■■□□□ 1.82
CHRNA4-209ENST00000627000 ALKQ9UM73 1620 aa26.4■■□□□ 1.82
CHRNA4-209ENST00000627000 NUDCQ9Y266 331 aa26.36■■□□□ 1.81
CHRNA4-209ENST00000627000 YTHDC2Q9H6S0 1430 aaKnown RBP26.36■■□□□ 1.81
CHRNA4-209ENST00000627000 RIMS2Q9UQ26 1411 aa26.36■■□□□ 1.81
CHRNA4-209ENST00000627000 PTPRMP28827 1452 aa26.36■■□□□ 1.81
CHRNA4-209ENST00000627000 SALL2Q9Y467 1007 aaPredicted RBP26.36■■□□□ 1.81
CHRNA4-209ENST00000627000 EVC2Q86UK5 1308 aa26.35■■□□□ 1.81
CHRNA4-209ENST00000627000 BLMP54132 1417 aaPredicted RBP26.34■■□□□ 1.81
CHRNA4-209ENST00000627000 NSD3Q9BZ95 1437 aa26.33■■□□□ 1.81
CHRNA4-209ENST00000627000 CABP2Q9NPB3 220 aa26.32■■□□□ 1.8
CHRNA4-209ENST00000627000 PRAM1Q96QH2 718 aa26.31■■□□□ 1.8
CHRNA4-209ENST00000627000 ADAMTS8Q9UP79 889 aa26.3■■□□□ 1.8
CHRNA4-209ENST00000627000 INSRP06213 1382 aa26.29■■□□□ 1.8
CHRNA4-209ENST00000627000 PUS7Q96PZ0 661 aaKnown RBP26.29■■□□□ 1.8
CHRNA4-209ENST00000627000 SETD1AO15047 1707 aaKnown RBP26.28■■□□□ 1.8
CHRNA4-209ENST00000627000 TNRQ92752 1358 aa26.28■■□□□ 1.8
CHRNA4-209ENST00000627000 MINK1Q8N4C8 1332 aaPredicted RBP26.28■■□□□ 1.8
CHRNA4-209ENST00000627000 POGKQ9P215 609 aa26.27■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms