RNA–Protein interactions for RNA: ENST00000625244.2

SNX1-214, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-214ENST00000625244 SHPRHQ149N8 1683 aa22.31■■□□□ 1.16
SNX1-214ENST00000625244 AFF2P51816 1311 aa22.31■■□□□ 1.16
SNX1-214ENST00000625244 AHDC1Q5TGY3 1603 aaPredicted RBP22.3■■□□□ 1.16
SNX1-214ENST00000625244 RGS12O14924 1447 aa22.29■■□□□ 1.16
SNX1-214ENST00000625244 KIF15Q9NS87 1388 aa22.26■■□□□ 1.15
SNX1-214ENST00000625244 C14orf37Q86TY3 774 aa22.26■■□□□ 1.15
SNX1-214ENST00000625244 NCOA3Q9Y6Q9 1424 aa22.25■■□□□ 1.15
SNX1-214ENST00000625244 ADGRB3O60242 1522 aa22.25■■□□□ 1.15
SNX1-214ENST00000625244 DIP2AQ14689 1571 aa22.25■■□□□ 1.15
SNX1-214ENST00000625244 CHD2O14647 1828 aaKnown RBP22.24■■□□□ 1.15
SNX1-214ENST00000625244 ERBINQ96RT1 1412 aa22.24■■□□□ 1.15
SNX1-214ENST00000625244 CADPS2Q86UW7 1296 aa22.24■■□□□ 1.15
SNX1-214ENST00000625244 RRP7BPQ9NSQ0 103 aa22.24■■□□□ 1.15
SNX1-214ENST00000625244 EP400Q96L91 3159 aa22.24■■□□□ 1.15
SNX1-214ENST00000625244 NUTM2DQ5VT03 806 aaPredicted RBP22.23■■□□□ 1.15
SNX1-214ENST00000625244 PLEKHG1Q9ULL1 1385 aa22.23■■□□□ 1.15
SNX1-214ENST00000625244 ATF3P18847 181 aa22.22■■□□□ 1.15
SNX1-214ENST00000625244 RBM6P78332 1123 aaKnown RBP22.22■■□□□ 1.15
SNX1-214ENST00000625244 BRINP3Q76B58 766 aa22.22■■□□□ 1.15
SNX1-214ENST00000625244 C19orf44Q9H6X5 657 aa22.22■■□□□ 1.15
SNX1-214ENST00000625244 QTRT2Q9H974 415 aaKnown RBP22.22■■□□□ 1.15
SNX1-214ENST00000625244 KANK1Q14678 1352 aa22.22■■□□□ 1.15
SNX1-214ENST00000625244 NOS1P29475 1434 aa22.22■■□□□ 1.15
SNX1-214ENST00000625244 ZFYVE9O95405 1425 aa22.2■■□□□ 1.14
SNX1-214ENST00000625244 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.2■■□□□ 1.14
SNX1-214ENST00000625244 MYOM3Q5VTT5 1437 aa22.19■■□□□ 1.14
SNX1-214ENST00000625244 LMTK2Q8IWU2 1503 aa22.19■■□□□ 1.14
SNX1-214ENST00000625244 C8orf37Q96NL8 207 aa22.18■■□□□ 1.14
SNX1-214ENST00000625244 SLC52A1Q9NWF4 448 aa22.18■■□□□ 1.14
SNX1-214ENST00000625244 TBX22Q9Y458 520 aa22.18■■□□□ 1.14
SNX1-214ENST00000625244 PPP1R15AO75807 674 aaPredicted RBP22.17■■□□□ 1.14
SNX1-214ENST00000625244 ZRANB1Q9UGI0 708 aa22.17■■□□□ 1.14
SNX1-214ENST00000625244 SETD5Q9C0A6 1442 aa22.14■■□□□ 1.14
SNX1-214ENST00000625244 RIMS2Q9UQ26 1411 aa22.14■■□□□ 1.14
SNX1-214ENST00000625244 SETBP1Q9Y6X0 1596 aa22.14■■□□□ 1.13
SNX1-214ENST00000625244 ABCC5O15440 1437 aa22.14■■□□□ 1.13
SNX1-214ENST00000625244 ATAD2Q6PL18 1390 aa22.13■■□□□ 1.13
SNX1-214ENST00000625244 ADAMTS13Q76LX8 1427 aa22.11■■□□□ 1.13
SNX1-214ENST00000625244 ASXL1Q8IXJ9 1541 aa22.11■■□□□ 1.13
SNX1-214ENST00000625244 HDGFP51858 240 aaKnown RBP22.1■■□□□ 1.13
SNX1-214ENST00000625244 KANK4Q5T7N3 995 aaPredicted RBP22.1■■□□□ 1.13
SNX1-214ENST00000625244 FOXD1Q16676 465 aa22.09■■□□□ 1.13
SNX1-214ENST00000625244 LRRC59Q96AG4 307 aaKnown RBP22.09■■□□□ 1.13
SNX1-214ENST00000625244 NGLY1Q96IV0 654 aa22.08■■□□□ 1.13
SNX1-214ENST00000625244 DDX17Q92841 729 aaKnown RBP22.07■■□□□ 1.12
SNX1-214ENST00000625244 MYO5BQ9ULV0 1848 aa22.07■■□□□ 1.12
SNX1-214ENST00000625244 PNPLA6Q8IY17 1366 aa22.07■■□□□ 1.12
SNX1-214ENST00000625244 PIK3R4Q99570 1358 aa22.06■■□□□ 1.12
SNX1-214ENST00000625244 CROCC2H7BZ55 1655 aa22.05■■□□□ 1.12
SNX1-214ENST00000625244 ADAMTS2O95450 1211 aa22.05■■□□□ 1.12
SNX1-214ENST00000625244 AMOTL2Q9Y2J4 779 aa22.05■■□□□ 1.12
SNX1-214ENST00000625244 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.04■■□□□ 1.12
SNX1-214ENST00000625244 PTPRUQ92729 1446 aa22.04■■□□□ 1.12
SNX1-214ENST00000625244 TMEM131LA2VDJ0 1609 aa22.03■■□□□ 1.12
SNX1-214ENST00000625244 MST1RQ04912 1400 aa22.03■■□□□ 1.12
SNX1-214ENST00000625244 NHSL1Q5SYE7 1610 aa22.02■■□□□ 1.12
SNX1-214ENST00000625244 GCC2Q8IWJ2 1684 aa22.02■■□□□ 1.12
SNX1-214ENST00000625244 CHIC2Q9UKJ5 165 aa22.02■■□□□ 1.12
SNX1-214ENST00000625244 DCCP43146 1447 aa22.02■■□□□ 1.12
SNX1-214ENST00000625244 DAPK1P53355 1430 aa22.02■■□□□ 1.12
SNX1-214ENST00000625244 CHGAP10645 457 aaKnown RBP22■■□□□ 1.11
SNX1-214ENST00000625244 USP21Q9UK80 565 aa22■■□□□ 1.11
SNX1-214ENST00000625244 RPRD2Q5VT52 1461 aaKnown RBP21.99■■□□□ 1.11
SNX1-214ENST00000625244 ANKRD30AQ9BXX3 1397 aa21.99■■□□□ 1.11
SNX1-214ENST00000625244 TRPC5Q9UL62 973 aaPredicted RBP21.98■■□□□ 1.11
SNX1-214ENST00000625244 CCDC125Q86Z20 511 aa21.96■■□□□ 1.11
SNX1-214ENST00000625244 TRPM2O94759 1503 aa21.96■■□□□ 1.11
SNX1-214ENST00000625244 PTPN23Q9H3S7 1636 aa21.95■■□□□ 1.1
SNX1-214ENST00000625244 ATRNO75882 1429 aa21.93■■□□□ 1.1
SNX1-214ENST00000625244 FNBP4Q8N3X1 1017 aaPredicted RBP21.93■■□□□ 1.1
SNX1-214ENST00000625244 VPS8Q8N3P4 1428 aa21.92■■□□□ 1.1
SNX1-214ENST00000625244 XRN1Q8IZH2 1706 aaKnown RBP21.88■■□□□ 1.09
SNX1-214ENST00000625244 UNC13BO14795 1591 aa21.87■■□□□ 1.09
SNX1-214ENST00000625244 PTCH1Q13635 1447 aa21.86■■□□□ 1.09
SNX1-214ENST00000625244 ADGRL3Q9HAR2 1447 aa21.85■■□□□ 1.09
SNX1-214ENST00000625244 SOS2Q07890 1332 aaPredicted RBP21.84■■□□□ 1.09
SNX1-214ENST00000625244 METP08581 1390 aa21.84■■□□□ 1.09
SNX1-214ENST00000625244 C1orf167Q5SNV9 1468 aa21.83■■□□□ 1.09
SNX1-214ENST00000625244 DEFB132Q7Z7B7 95 aa21.83■■□□□ 1.09
SNX1-214ENST00000625244 BCL9LQ86UU0 1499 aa21.83■■□□□ 1.08
SNX1-214ENST00000625244 ANKRD50Q9ULJ7 1429 aa21.82■■□□□ 1.08
SNX1-214ENST00000625244 NRXN3Q9Y4C0 1643 aa21.82■■□□□ 1.08
SNX1-214ENST00000625244 ORAI2Q96SN7 254 aa21.81■■□□□ 1.08
SNX1-214ENST00000625244 ADGRL2O95490 1459 aa21.81■■□□□ 1.08
SNX1-214ENST00000625244 BLMP54132 1417 aaPredicted RBP21.8■■□□□ 1.08
SNX1-214ENST00000625244 GJD4Q96KN9 370 aaPredicted RBP21.8■■□□□ 1.08
SNX1-214ENST00000625244 LAMC1P11047 1609 aa21.8■■□□□ 1.08
SNX1-214ENST00000625244 LRP5O75197 1615 aa21.79■■□□□ 1.08
SNX1-214ENST00000625244 NALCNQ8IZF0 1738 aa21.77■■□□□ 1.08
SNX1-214ENST00000625244 E9PCH4 1651 aa21.75■■□□□ 1.07
SNX1-214ENST00000625244 MYOM2P54296 1465 aa21.75■■□□□ 1.07
SNX1-214ENST00000625244 COL22A1Q8NFW1 1626 aaPredicted RBP21.73■■□□□ 1.07
SNX1-214ENST00000625244 PSDA5PKW4 1024 aaPredicted RBP21.71■■□□□ 1.07
SNX1-214ENST00000625244 HRCP23327 699 aa21.69■■□□□ 1.06
SNX1-214ENST00000625244 SF3B2Q13435 895 aaKnown RBP21.69■■□□□ 1.06
SNX1-214ENST00000625244 RALGAPBQ86X10 1494 aa21.69■■□□□ 1.06
SNX1-214ENST00000625244 ZNF326Q5BKZ1 582 aaKnown RBP21.68■■□□□ 1.06
SNX1-214ENST00000625244 GLI3P10071 1580 aa21.68■■□□□ 1.06
SNX1-214ENST00000625244 UNC5CLQ8IV45 518 aa21.67■■□□□ 1.06
SNX1-214ENST00000625244 ROBO2Q9HCK4 1378 aa21.64■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms