RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 B4GALNT3Q6L9W6 998 aa14.3□□□□□ -0.12
CUX1-221ENST00000622516 KNSTRNQ9Y448 316 aa14.3□□□□□ -0.12
CUX1-221ENST00000622516 RNF17Q9BXT8 1623 aaKnown RBP14.3□□□□□ -0.12
CUX1-221ENST00000622516 FAM69CQ0P6D2 419 aa14.3□□□□□ -0.12
CUX1-221ENST00000622516 TRAK1Q9UPV9 953 aa14.3□□□□□ -0.12
CUX1-221ENST00000622516 NUDCQ9Y266 331 aa14.29□□□□□ -0.12
CUX1-221ENST00000622516 NOS1P29475 1434 aa14.29□□□□□ -0.12
CUX1-221ENST00000622516 MLH3Q9UHC1 1453 aa14.29□□□□□ -0.12
CUX1-221ENST00000622516 LRPPRCP42704 1394 aaKnown RBP14.28□□□□□ -0.12
CUX1-221ENST00000622516 ABCA6Q8N139 1617 aa14.27□□□□□ -0.12
CUX1-221ENST00000622516 HECW2Q9P2P5 1572 aa14.27□□□□□ -0.12
CUX1-221ENST00000622516 YEATS2Q9ULM3 1422 aa14.27□□□□□ -0.13
CUX1-221ENST00000622516 STAC3Q96MF2 364 aa14.27□□□□□ -0.13
CUX1-221ENST00000622516 DAXXQ9UER7 740 aaPredicted RBP14.27□□□□□ -0.13
CUX1-221ENST00000622516 MROH2AA6NES4 1674 aa14.27□□□□□ -0.13
CUX1-221ENST00000622516 KIF1BO60333 1816 aa14.26□□□□□ -0.13
CUX1-221ENST00000622516 IQGAP1P46940 1657 aa14.26□□□□□ -0.13
CUX1-221ENST00000622516 SMG6Q86US8 1419 aaKnown RBP14.26□□□□□ -0.13
CUX1-221ENST00000622516 AMER1Q5JTC6 1135 aaPredicted RBP14.25□□□□□ -0.13
CUX1-221ENST00000622516 CDCA7LQ96GN5 454 aa14.25□□□□□ -0.13
CUX1-221ENST00000622516 CDCA8Q53HL2 280 aa14.24□□□□□ -0.13
CUX1-221ENST00000622516 MAP3K4Q9Y6R4 1608 aa14.24□□□□□ -0.13
CUX1-221ENST00000622516 PPP4R2Q9NY27 417 aa14.24□□□□□ -0.13
CUX1-221ENST00000622516 EIF3AQ14152 1382 aaKnown RBP14.24□□□□□ -0.13
CUX1-221ENST00000622516 CFAP74Q9C0B2 1584 aa14.23□□□□□ -0.13
CUX1-221ENST00000622516 PPP2R1AP30153 589 aa14.23□□□□□ -0.13
CUX1-221ENST00000622516 IDI1Q13907 227 aa14.23□□□□□ -0.13
CUX1-221ENST00000622516 SAFB2Q14151 953 aaKnown RBP eCLIP14.23□□□□□ -0.13
CUX1-221ENST00000622516 ADAMTS8Q9UP79 889 aa14.23□□□□□ -0.13
CUX1-221ENST00000622516 NEO1Q92859 1461 aa14.23□□□□□ -0.13
CUX1-221ENST00000622516 ABCC3O15438 1527 aa14.22□□□□□ -0.13
CUX1-221ENST00000622516 LMTK2Q8IWU2 1503 aa14.22□□□□□ -0.13
CUX1-221ENST00000622516 FBXO31Q5XUX0 539 aaPredicted RBP14.22□□□□□ -0.13
CUX1-221ENST00000622516 CARD14Q9BXL6 1004 aa14.21□□□□□ -0.13
CUX1-221ENST00000622516 MYOM2P54296 1465 aa14.2□□□□□ -0.14
CUX1-221ENST00000622516 MLECQ14165 292 aa14.2□□□□□ -0.14
CUX1-221ENST00000622516 TSPOAP1O95153 1857 aa14.2□□□□□ -0.14
CUX1-221ENST00000622516 CENPJQ9HC77 1338 aaPredicted RBP14.19□□□□□ -0.14
CUX1-221ENST00000622516 C14orf93Q9H972 538 aaKnown RBP14.19□□□□□ -0.14
CUX1-221ENST00000622516 RBM19Q9Y4C8 960 aaKnown RBP14.19□□□□□ -0.14
CUX1-221ENST00000622516 DIP2CQ9Y2E4 1556 aa14.19□□□□□ -0.14
CUX1-221ENST00000622516 TNNT2P45379 298 aaPredicted RBP14.19□□□□□ -0.14
CUX1-221ENST00000622516 STK26Q9P289 416 aa14.19□□□□□ -0.14
CUX1-221ENST00000622516 ERVK-7P63135 1459 aa14.19□□□□□ -0.14
CUX1-221ENST00000622516 SLC12A5Q9H2X9 1139 aa14.19□□□□□ -0.14
CUX1-221ENST00000622516 SIGLEC1Q9BZZ2 1709 aa14.19□□□□□ -0.14
CUX1-221ENST00000622516 ADGRB3O60242 1522 aa14.18□□□□□ -0.14
CUX1-221ENST00000622516 CCDC146Q8IYE0 955 aa14.17□□□□□ -0.14
CUX1-221ENST00000622516 RIMBP3CA6NJZ7 1639 aa14.17□□□□□ -0.14
CUX1-221ENST00000622516 RIMBP3BA6NNM3 1639 aa14.17□□□□□ -0.14
CUX1-221ENST00000622516 RIMBP3Q9UFD9 1639 aa14.17□□□□□ -0.14
CUX1-221ENST00000622516 WDR43Q15061 677 aaKnown RBP eCLIP14.16□□□□□ -0.14
CUX1-221ENST00000622516 RICTORQ6R327 1708 aa14.16□□□□□ -0.14
CUX1-221ENST00000622516 IFT172Q9UG01 1749 aa14.16□□□□□ -0.14
CUX1-221ENST00000622516 PIK3C2GO75747 1445 aa14.16□□□□□ -0.14
CUX1-221ENST00000622516 ERICH6BQ5W0A0 696 aa14.16□□□□□ -0.14
CUX1-221ENST00000622516 NRXN1Q9ULB1 1477 aa14.15□□□□□ -0.14
CUX1-221ENST00000622516 KIAA1210Q9ULL0 1709 aa14.15□□□□□ -0.14
CUX1-221ENST00000622516 CAMSAP1Q5T5Y3 1602 aa14.15□□□□□ -0.14
CUX1-221ENST00000622516 VGFO15240 615 aaPredicted RBP14.14□□□□□ -0.15
CUX1-221ENST00000622516 RCAN3Q9UKA8 241 aa14.14□□□□□ -0.15
CUX1-221ENST00000622516 MYOM1P52179 1685 aa14.14□□□□□ -0.15
CUX1-221ENST00000622516 ASXL1Q8IXJ9 1541 aa14.14□□□□□ -0.15
CUX1-221ENST00000622516 SYNMO15061 1565 aa14.14□□□□□ -0.15
CUX1-221ENST00000622516 NEURL4Q96JN8 1562 aa14.14□□□□□ -0.15
CUX1-221ENST00000622516 PLIN1O60240 522 aa14.13□□□□□ -0.15
CUX1-221ENST00000622516 KDM5AP29375 1690 aaKnown RBP14.13□□□□□ -0.15
CUX1-221ENST00000622516 RNF123Q5XPI4 1314 aa14.13□□□□□ -0.15
CUX1-221ENST00000622516 CCDC136Q96JN2 1154 aa14.13□□□□□ -0.15
CUX1-221ENST00000622516 PPLO60437 1756 aa14.12□□□□□ -0.15
CUX1-221ENST00000622516 CABP2Q9NPB3 220 aa14.12□□□□□ -0.15
CUX1-221ENST00000622516 STAG3Q9UJ98 1225 aa14.12□□□□□ -0.15
CUX1-221ENST00000622516 RPGRIP1LQ68CZ1 1315 aa14.12□□□□□ -0.15
CUX1-221ENST00000622516 RRP1P56182 461 aaKnown RBP14.1□□□□□ -0.15
CUX1-221ENST00000622516 EXOC6Q8TAG9 804 aa14.1□□□□□ -0.15
CUX1-221ENST00000622516 BLMP54132 1417 aaPredicted RBP14.1□□□□□ -0.15
CUX1-221ENST00000622516 ADGRB1O14514 1584 aa14.1□□□□□ -0.15
CUX1-221ENST00000622516 SLC52A1Q9NWF4 448 aa14.1□□□□□ -0.15
CUX1-221ENST00000622516 PLEKHH1Q9ULM0 1364 aa14.09□□□□□ -0.15
CUX1-221ENST00000622516 PDE3BQ13370 1112 aa14.09□□□□□ -0.15
CUX1-221ENST00000622516 NSD3Q9BZ95 1437 aa14.08□□□□□ -0.16
CUX1-221ENST00000622516 APAF1O14727 1248 aa14.08□□□□□ -0.16
CUX1-221ENST00000622516 DIP2BQ9P265 1576 aa14.08□□□□□ -0.16
CUX1-221ENST00000622516 MORC1Q86VD1 984 aa14.07□□□□□ -0.16
CUX1-221ENST00000622516 NEXMIFQ5QGS0 1516 aa14.07□□□□□ -0.16
CUX1-221ENST00000622516 MYO5BQ9ULV0 1848 aa14.07□□□□□ -0.16
CUX1-221ENST00000622516 MINK1Q8N4C8 1332 aaPredicted RBP14.07□□□□□ -0.16
CUX1-221ENST00000622516 SRPK2P78362 688 aaKnown RBP14.06□□□□□ -0.16
CUX1-221ENST00000622516 GLI2P10070 1586 aa14.06□□□□□ -0.16
CUX1-221ENST00000622516 SETBP1Q9Y6X0 1596 aa14.06□□□□□ -0.16
CUX1-221ENST00000622516 ARHGAP31Q2M1Z3 1444 aa14.06□□□□□ -0.16
CUX1-221ENST00000622516 SBNO2Q9Y2G9 1366 aa14.06□□□□□ -0.16
CUX1-221ENST00000622516 QRICH2Q9H0J4 1663 aa14.05□□□□□ -0.16
CUX1-221ENST00000622516 PIK3C2BO00750 1634 aa14.05□□□□□ -0.16
CUX1-221ENST00000622516 PRAM1Q96QH2 718 aa14.05□□□□□ -0.16
CUX1-221ENST00000622516 EVC2Q86UK5 1308 aa14.05□□□□□ -0.16
CUX1-221ENST00000622516 NEUROD2Q15784 382 aa14.04□□□□□ -0.16
CUX1-221ENST00000622516 SPINK5Q9NQ38 1064 aaPredicted RBP14.04□□□□□ -0.16
CUX1-221ENST00000622516 POGKQ9P215 609 aa14.04□□□□□ -0.16
CUX1-221ENST00000622516 NPC1L1Q9UHC9 1359 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms