RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 TERF1P54274 439 aa10.07□□□□□ -0.8
VPS11-209ENST00000622309 DMTNQ08495 405 aa10.07□□□□□ -0.8
VPS11-209ENST00000622309 CRBNQ96SW2 442 aa10.07□□□□□ -0.8
VPS11-209ENST00000622309 OFD1O75665 1012 aa10.06□□□□□ -0.8
VPS11-209ENST00000622309 MSNP26038 577 aaKnown RBP10.06□□□□□ -0.8
VPS11-209ENST00000622309 PPP4R3BQ5MIZ7 849 aa10.06□□□□□ -0.8
VPS11-209ENST00000622309 CENPQQ7L2Z9 268 aaPredicted RBP10.06□□□□□ -0.8
VPS11-209ENST00000622309 ISY1Q9ULR0 285 aaKnown RBP10.06□□□□□ -0.8
VPS11-209ENST00000622309 FGD6Q6ZV73 1430 aa10.06□□□□□ -0.8
VPS11-209ENST00000622309 TRAK2O60296 914 aa10.05□□□□□ -0.8
VPS11-209ENST00000622309 R3HCC1Q9Y3T6 440 aaKnown RBP10.05□□□□□ -0.8
VPS11-209ENST00000622309 PLIN1O60240 522 aa10.05□□□□□ -0.8
VPS11-209ENST00000622309 MCM4P33991 863 aa10.05□□□□□ -0.8
VPS11-209ENST00000622309 NECTIN2Q92692 538 aa10.05□□□□□ -0.8
VPS11-209ENST00000622309 FTSJ3Q8IY81 847 aaKnown RBP10.05□□□□□ -0.8
VPS11-209ENST00000622309 SLC4A1APQ9BWU0 796 aaKnown RBP10.05□□□□□ -0.8
VPS11-209ENST00000622309 CWC22Q9HCG8 908 aaKnown RBP10.05□□□□□ -0.8
VPS11-209ENST00000622309 PHF23Q9BUL5 403 aaPredicted RBP10.04□□□□□ -0.8
VPS11-209ENST00000622309 CDK13Q14004 1512 aaKnown RBP10.04□□□□□ -0.8
VPS11-209ENST00000622309 MAP3K4Q9Y6R4 1608 aa10.04□□□□□ -0.8
VPS11-209ENST00000622309 NCOA1Q15788 1441 aa10.04□□□□□ -0.8
VPS11-209ENST00000622309 UACAQ9BZF9 1416 aa10.04□□□□□ -0.8
VPS11-209ENST00000622309 EPRSP07814 1512 aaKnown RBP10.03□□□□□ -0.8
VPS11-209ENST00000622309 TICAM2Q86XR7 235 aa10.03□□□□□ -0.8
VPS11-209ENST00000622309 PNISRQ8TF01 805 aaKnown RBP10.03□□□□□ -0.8
VPS11-209ENST00000622309 PTPRKQ15262 1439 aa10.03□□□□□ -0.8
VPS11-209ENST00000622309 SAMD9Q5K651 1589 aa10.03□□□□□ -0.8
VPS11-209ENST00000622309 LRRIQ1Q96JM4 1722 aa10.03□□□□□ -0.8
VPS11-209ENST00000622309 ZSCAN30Q86W11 494 aa10.03□□□□□ -0.8
VPS11-209ENST00000622309 COL17A1Q9UMD9 1497 aaPredicted RBP10.03□□□□□ -0.8
VPS11-209ENST00000622309 IQGAP2Q13576 1575 aa10.02□□□□□ -0.8
VPS11-209ENST00000622309 UQCRHLA0A096LP55 91 aa10.02□□□□□ -0.81
VPS11-209ENST00000622309 KIF20AO95235 890 aa10.02□□□□□ -0.81
VPS11-209ENST00000622309 UQCRHP07919 91 aa10.02□□□□□ -0.81
VPS11-209ENST00000622309 PDE3BQ13370 1112 aa10.01□□□□□ -0.81
VPS11-209ENST00000622309 TMEM51Q9NW97 253 aa10.01□□□□□ -0.81
VPS11-209ENST00000622309 KDM5BQ9UGL1 1544 aa10.01□□□□□ -0.81
VPS11-209ENST00000622309 ZNF692Q9BU19 519 aaPredicted RBP10.01□□□□□ -0.81
VPS11-209ENST00000622309 MAGI3Q5TCQ9 1506 aa10.01□□□□□ -0.81
VPS11-209ENST00000622309 KIF7Q2M1P5 1343 aa10.01□□□□□ -0.81
VPS11-209ENST00000622309 TEX2Q8IWB9 1127 aa10.01□□□□□ -0.81
VPS11-209ENST00000622309 ZNF777Q9ULD5 760 aaPredicted RBP10□□□□□ -0.81
VPS11-209ENST00000622309 GTPBP4Q9BZE4 634 aaKnown RBP10□□□□□ -0.81
VPS11-209ENST00000622309 ANTXR1Q9H6X2 564 aa10□□□□□ -0.81
VPS11-209ENST00000622309 DYNC1I1O14576 645 aa10□□□□□ -0.81
VPS11-209ENST00000622309 CERS3Q8IU89 383 aa10□□□□□ -0.81
VPS11-209ENST00000622309 CCDC94Q9BW85 323 aaPredicted RBP10□□□□□ -0.81
VPS11-209ENST00000622309 MYOM3Q5VTT5 1437 aa10□□□□□ -0.81
VPS11-209ENST00000622309 KDM2BQ8NHM5 1336 aa9.99□□□□□ -0.81
VPS11-209ENST00000622309 ZSCAN20P17040 1043 aaPredicted RBP9.99□□□□□ -0.81
VPS11-209ENST00000622309 ZNF830Q96NB3 372 aaPredicted RBP9.99□□□□□ -0.81
VPS11-209ENST00000622309 PUS7Q96PZ0 661 aaKnown RBP9.99□□□□□ -0.81
VPS11-209ENST00000622309 ZNF644Q9H582 1327 aaPredicted RBP9.99□□□□□ -0.81
VPS11-209ENST00000622309 LETM1O95202 739 aaPredicted RBP9.99□□□□□ -0.81
VPS11-209ENST00000622309 CCDC173Q0VFZ6 552 aa9.99□□□□□ -0.81
VPS11-209ENST00000622309 UPF2Q9HAU5 1272 aaKnown RBP9.99□□□□□ -0.81
VPS11-209ENST00000622309 SPRYD3Q8NCJ5 442 aa9.98□□□□□ -0.81
VPS11-209ENST00000622309 PRDM16Q9HAZ2 1276 aa9.98□□□□□ -0.81
VPS11-209ENST00000622309 DDX11L8A8MPP1 907 aa9.98□□□□□ -0.81
VPS11-209ENST00000622309 DNTTIP2Q5QJE6 756 aaKnown RBP9.98□□□□□ -0.81
VPS11-209ENST00000622309 ZBTB22O15209 634 aa9.97□□□□□ -0.81
VPS11-209ENST00000622309 OS9Q13438 667 aaPredicted RBP9.97□□□□□ -0.81
VPS11-209ENST00000622309 TAF3Q5VWG9 929 aa9.97□□□□□ -0.81
VPS11-209ENST00000622309 CCDC18Q5T9S5 1454 aa9.97□□□□□ -0.81
VPS11-209ENST00000622309 CHMP5Q9NZZ3 219 aa9.96□□□□□ -0.81
VPS11-209ENST00000622309 SUPT6HQ7KZ85 1726 aaKnown RBP9.96□□□□□ -0.82
VPS11-209ENST00000622309 WDR7Q9Y4E6 1490 aa9.96□□□□□ -0.82
VPS11-209ENST00000622309 ZCCHC11Q5TAX3 1644 aaKnown RBP9.96□□□□□ -0.82
VPS11-209ENST00000622309 EHBP1L1Q8N3D4 1523 aa9.96□□□□□ -0.82
VPS11-209ENST00000622309 E9PSI1 815 aa9.95□□□□□ -0.82
VPS11-209ENST00000622309 RNF216Q9NWF9 866 aaPredicted RBP9.95□□□□□ -0.82
VPS11-209ENST00000622309 USP19O94966 1318 aa9.95□□□□□ -0.82
VPS11-209ENST00000622309 CDCA7LQ96GN5 454 aa9.94□□□□□ -0.82
VPS11-209ENST00000622309 DISP1Q96F81 1524 aa9.94□□□□□ -0.82
VPS11-209ENST00000622309 HECW1Q76N89 1606 aa9.94□□□□□ -0.82
VPS11-209ENST00000622309 TBC1D2Q9BYX2 928 aa9.94□□□□□ -0.82
VPS11-209ENST00000622309 NAIPQ13075 1403 aa9.94□□□□□ -0.82
VPS11-209ENST00000622309 PTPN23Q9H3S7 1636 aa9.94□□□□□ -0.82
VPS11-209ENST00000622309 NASPP49321 788 aaPredicted RBP9.94□□□□□ -0.82
VPS11-209ENST00000622309 CSPP1Q1MSJ5 1256 aa9.94□□□□□ -0.82
VPS11-209ENST00000622309 CD109Q6YHK3 1445 aa9.93□□□□□ -0.82
VPS11-209ENST00000622309 CBX1P83916 185 aa9.93□□□□□ -0.82
VPS11-209ENST00000622309 C20orf194Q5TEA3 1177 aa9.93□□□□□ -0.82
VPS11-209ENST00000622309 UGGT2Q9NYU1 1516 aa9.93□□□□□ -0.82
VPS11-209ENST00000622309 FAM193AP78312 1265 aa9.92□□□□□ -0.82
VPS11-209ENST00000622309 PPP1R9BQ96SB3 815 aa9.92□□□□□ -0.82
VPS11-209ENST00000622309 DHX29Q7Z478 1369 aaKnown RBP9.92□□□□□ -0.82
VPS11-209ENST00000622309 HMGB1P09429 215 aaKnown RBP9.92□□□□□ -0.82
VPS11-209ENST00000622309 GAS2L3Q86XJ1 694 aa9.92□□□□□ -0.82
VPS11-209ENST00000622309 L3MBTL2Q969R5 705 aa9.92□□□□□ -0.82
VPS11-209ENST00000622309 HFM1A2PYH4 1435 aa9.92□□□□□ -0.82
VPS11-209ENST00000622309 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.92□□□□□ -0.82
VPS11-209ENST00000622309 XPCQ01831 940 aaPredicted RBP9.92□□□□□ -0.82
VPS11-209ENST00000622309 CGNQ9P2M7 1197 aaKnown RBP9.92□□□□□ -0.82
VPS11-209ENST00000622309 SEC24BO95487 1268 aa9.91□□□□□ -0.82
VPS11-209ENST00000622309 CHRM1P11229 460 aaPredicted RBP9.91□□□□□ -0.82
VPS11-209ENST00000622309 SASS6Q6UVJ0 657 aa9.91□□□□□ -0.82
VPS11-209ENST00000622309 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.91□□□□□ -0.82
VPS11-209ENST00000622309 PSMD1Q99460 953 aa9.91□□□□□ -0.82
VPS11-209ENST00000622309 LRPPRCP42704 1394 aaKnown RBP9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms