RNA–Protein interactions for RNA: ENST00000620393.4

CPNE3-209, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 680 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-209ENST00000620393 KDM4FA0A1W2PPD8 638 aa11.5□□□□□ -0.57
CPNE3-209ENST00000620393 STAG3Q9UJ98 1225 aa11.5□□□□□ -0.57
CPNE3-209ENST00000620393 KDM2AQ9Y2K7 1162 aa11.5□□□□□ -0.57
CPNE3-209ENST00000620393 RPGRIP1LQ68CZ1 1315 aa11.5□□□□□ -0.57
CPNE3-209ENST00000620393 ZNF326Q5BKZ1 582 aaKnown RBP11.49□□□□□ -0.57
CPNE3-209ENST00000620393 SPATA31D1Q6ZQQ2 1576 aa11.49□□□□□ -0.57
CPNE3-209ENST00000620393 ADAMTSL3P82987 1691 aa11.49□□□□□ -0.57
CPNE3-209ENST00000620393 UGGT1Q9NYU2 1555 aa11.47□□□□□ -0.57
CPNE3-209ENST00000620393 ATXN8OSP0DMR3 200 aa11.47□□□□□ -0.57
CPNE3-209ENST00000620393 NBPF8Q3BBV2 869 aa11.47□□□□□ -0.57
CPNE3-209ENST00000620393 SYNMO15061 1565 aa11.46□□□□□ -0.57
CPNE3-209ENST00000620393 VGFO15240 615 aaPredicted RBP11.46□□□□□ -0.57
CPNE3-209ENST00000620393 SPHKAPQ2M3C7 1700 aa11.46□□□□□ -0.58
CPNE3-209ENST00000620393 MROH2AA6NES4 1674 aa11.46□□□□□ -0.58
CPNE3-209ENST00000620393 CLTCL1P53675 1640 aa11.46□□□□□ -0.58
CPNE3-209ENST00000620393 MADDQ8WXG6 1647 aa11.46□□□□□ -0.58
CPNE3-209ENST00000620393 PTPRMP28827 1452 aa11.45□□□□□ -0.58
CPNE3-209ENST00000620393 HDGFP51858 240 aaKnown RBP11.45□□□□□ -0.58
CPNE3-209ENST00000620393 THEMISQ8N1K5 641 aaPredicted RBP11.45□□□□□ -0.58
CPNE3-209ENST00000620393 PREX1Q8TCU6 1659 aa11.44□□□□□ -0.58
CPNE3-209ENST00000620393 CFAP65Q6ZU64 1925 aaKnown RBP11.44□□□□□ -0.58
CPNE3-209ENST00000620393 NEURL4Q96JN8 1562 aa11.44□□□□□ -0.58
CPNE3-209ENST00000620393 NLRP1Q9C000 1473 aa11.44□□□□□ -0.58
CPNE3-209ENST00000620393 UHRF1BP1Q6BDS2 1440 aa11.43□□□□□ -0.58
CPNE3-209ENST00000620393 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.43□□□□□ -0.58
CPNE3-209ENST00000620393 FER1L4A9Z1Z3 1794 aa11.43□□□□□ -0.58
CPNE3-209ENST00000620393 PIK3C2BO00750 1634 aa11.42□□□□□ -0.58
CPNE3-209ENST00000620393 ADGRF5Q8IZF2 1346 aa11.42□□□□□ -0.58
CPNE3-209ENST00000620393 A2ML1A8K2U0 1454 aa11.42□□□□□ -0.58
CPNE3-209ENST00000620393 ADGRB3O60242 1522 aa11.41□□□□□ -0.58
CPNE3-209ENST00000620393 C3P01024 1663 aa11.41□□□□□ -0.58
CPNE3-209ENST00000620393 RIMS1Q86UR5 1692 aaKnown RBP11.41□□□□□ -0.58
CPNE3-209ENST00000620393 NUTM2DQ5VT03 806 aaPredicted RBP11.41□□□□□ -0.58
CPNE3-209ENST00000620393 TXNDC2Q86VQ3 553 aa11.4□□□□□ -0.58
CPNE3-209ENST00000620393 ZFYVE9O95405 1425 aa11.4□□□□□ -0.58
CPNE3-209ENST00000620393 TMEM2Q9UHN6 1383 aa11.4□□□□□ -0.59
CPNE3-209ENST00000620393 PRAG1Q86YV5 1406 aa11.39□□□□□ -0.59
CPNE3-209ENST00000620393 C14orf93Q9H972 538 aaKnown RBP11.39□□□□□ -0.59
CPNE3-209ENST00000620393 EID1Q9Y6B2 187 aa11.39□□□□□ -0.59
CPNE3-209ENST00000620393 TMEM131LA2VDJ0 1609 aa11.38□□□□□ -0.59
CPNE3-209ENST00000620393 RIMS2Q9UQ26 1411 aa11.38□□□□□ -0.59
CPNE3-209ENST00000620393 LTKP29376 864 aa11.38□□□□□ -0.59
CPNE3-209ENST00000620393 NBPF1Q3BBV0 1214 aa11.38□□□□□ -0.59
CPNE3-209ENST00000620393 CFAP70Q5T0N1 1121 aa11.38□□□□□ -0.59
CPNE3-209ENST00000620393 MYOM2P54296 1465 aa11.37□□□□□ -0.59
CPNE3-209ENST00000620393 SETD1BQ9UPS6 1966 aaKnown RBP11.36□□□□□ -0.59
CPNE3-209ENST00000620393 ANKLE2Q86XL3 938 aa11.36□□□□□ -0.59
CPNE3-209ENST00000620393 CARD11Q9BXL7 1154 aa11.36□□□□□ -0.59
CPNE3-209ENST00000620393 ZBTB12Q9Y330 459 aaPredicted RBP11.36□□□□□ -0.59
CPNE3-209ENST00000620393 KIF1BO60333 1816 aa11.36□□□□□ -0.59
CPNE3-209ENST00000620393 RBM42Q9BTD8 480 aaKnown RBP11.35□□□□□ -0.59
CPNE3-209ENST00000620393 NRXN1Q9ULB1 1477 aa11.35□□□□□ -0.59
CPNE3-209ENST00000620393 ROCK2O75116 1388 aaKnown RBP11.34□□□□□ -0.59
CPNE3-209ENST00000620393 EIF4G2P78344 907 aaKnown RBP eCLIP11.34□□□□□ -0.59
CPNE3-209ENST00000620393 NEXMIFQ5QGS0 1516 aa11.34□□□□□ -0.59
CPNE3-209ENST00000620393 ARHGAP23Q9P227 1491 aa11.33□□□□□ -0.6
CPNE3-209ENST00000620393 BCANQ96GW7 911 aa11.33□□□□□ -0.6
CPNE3-209ENST00000620393 PIK3C2GO75747 1445 aa11.33□□□□□ -0.6
CPNE3-209ENST00000620393 GPRASP1Q5JY77 1395 aa11.32□□□□□ -0.6
CPNE3-209ENST00000620393 SLIT1O75093 1534 aa11.32□□□□□ -0.6
CPNE3-209ENST00000620393 TMEM132EQ6IEE7 984 aa11.32□□□□□ -0.6
CPNE3-209ENST00000620393 RALGAPBQ86X10 1494 aa11.32□□□□□ -0.6
CPNE3-209ENST00000620393 PLEKHG1Q9ULL1 1385 aa11.31□□□□□ -0.6
CPNE3-209ENST00000620393 KDM5AP29375 1690 aaKnown RBP11.31□□□□□ -0.6
CPNE3-209ENST00000620393 ZNF316A6NFI3 1004 aaPredicted RBP11.31□□□□□ -0.6
CPNE3-209ENST00000620393 HSPA5P11021 654 aaKnown RBP11.31□□□□□ -0.6
CPNE3-209ENST00000620393 TBX22Q9Y458 520 aa11.31□□□□□ -0.6
CPNE3-209ENST00000620393 CEP170BQ9Y4F5 1589 aaPredicted RBP11.31□□□□□ -0.6
CPNE3-209ENST00000620393 UBR1Q8IWV7 1749 aa11.3□□□□□ -0.6
CPNE3-209ENST00000620393 MYO3AQ8NEV4 1616 aa11.29□□□□□ -0.6
CPNE3-209ENST00000620393 HSPA2P54652 639 aa11.29□□□□□ -0.6
CPNE3-209ENST00000620393 HIRIP3Q9BW71 556 aaPredicted RBP11.29□□□□□ -0.6
CPNE3-209ENST00000620393 NCKAP5LQ9HCH0 1330 aa11.29□□□□□ -0.6
CPNE3-209ENST00000620393 SCAF11Q99590 1463 aaKnown RBP11.28□□□□□ -0.6
CPNE3-209ENST00000620393 ST20-MTHFSA0A0A6YYL1 179 aa11.28□□□□□ -0.6
CPNE3-209ENST00000620393 SLC26A8Q96RN1 970 aa11.28□□□□□ -0.6
CPNE3-209ENST00000620393 PPLO60437 1756 aa11.28□□□□□ -0.6
CPNE3-209ENST00000620393 USP47Q96K76 1375 aa11.28□□□□□ -0.6
CPNE3-209ENST00000620393 TRAK1Q9UPV9 953 aa11.27□□□□□ -0.61
CPNE3-209ENST00000620393 ADAMTS13Q76LX8 1427 aa11.26□□□□□ -0.61
CPNE3-209ENST00000620393 SIRT1Q96EB6 747 aa11.26□□□□□ -0.61
CPNE3-209ENST00000620393 STK26Q9P289 416 aa11.26□□□□□ -0.61
CPNE3-209ENST00000620393 METP08581 1390 aa11.26□□□□□ -0.61
CPNE3-209ENST00000620393 IFT172Q9UG01 1749 aa11.26□□□□□ -0.61
CPNE3-209ENST00000620393 MYO5BQ9ULV0 1848 aa11.25□□□□□ -0.61
CPNE3-209ENST00000620393 MED14O60244 1454 aa11.25□□□□□ -0.61
CPNE3-209ENST00000620393 ABCC11Q96J66 1382 aa11.25□□□□□ -0.61
CPNE3-209ENST00000620393 TRPM1Q7Z4N2 1603 aa11.24□□□□□ -0.61
CPNE3-209ENST00000620393 ALKQ9UM73 1620 aa11.24□□□□□ -0.61
CPNE3-209ENST00000620393 SLC24A1O60721 1099 aa11.24□□□□□ -0.61
CPNE3-209ENST00000620393 TESK2Q96S53 571 aa11.24□□□□□ -0.61
CPNE3-209ENST00000620393 LRPPRCP42704 1394 aaKnown RBP11.24□□□□□ -0.61
CPNE3-209ENST00000620393 LMTK3Q96Q04 1460 aa11.24□□□□□ -0.61
CPNE3-209ENST00000620393 SETBP1Q9Y6X0 1596 aa11.24□□□□□ -0.61
CPNE3-209ENST00000620393 ZNF142P52746 1687 aaPredicted RBP11.24□□□□□ -0.61
CPNE3-209ENST00000620393 SP7Q8TDD2 431 aaPredicted RBP11.23□□□□□ -0.61
CPNE3-209ENST00000620393 AMOTL2Q9Y2J4 779 aa11.23□□□□□ -0.61
CPNE3-209ENST00000620393 NPHP4O75161 1426 aaPredicted RBP11.23□□□□□ -0.61
CPNE3-209ENST00000620393 YTHDC2Q9H6S0 1430 aaKnown RBP11.23□□□□□ -0.61
CPNE3-209ENST00000620393 ADGRB1O14514 1584 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms