RNA–Protein interactions for RNA: ENST00000618819.4

PTPN9-206, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene PTPN9, Length 7,813 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-206ENST00000618819 MLECQ14165 292 aa17.58■□□□□ 0.41
PTPN9-206ENST00000618819 MRE11P49959 708 aa17.58■□□□□ 0.4
PTPN9-206ENST00000618819 COG6Q9Y2V7 657 aa17.58■□□□□ 0.4
PTPN9-206ENST00000618819 CT47B1P0C2W7 299 aaPredicted RBP17.57■□□□□ 0.4
PTPN9-206ENST00000618819 CCDC173Q0VFZ6 552 aa17.57■□□□□ 0.4
PTPN9-206ENST00000618819 AEBP1Q8IUX7 1158 aa17.57■□□□□ 0.4
PTPN9-206ENST00000618819 MEX3CQ5U5Q3 659 aaKnown RBP17.57■□□□□ 0.4
PTPN9-206ENST00000618819 SMC3Q9UQE7 1217 aa17.57■□□□□ 0.4
PTPN9-206ENST00000618819 DHX16O60231 1041 aaKnown RBP17.56■□□□□ 0.4
PTPN9-206ENST00000618819 KIAA0754O94854 1291 aa17.56■□□□□ 0.4
PTPN9-206ENST00000618819 CPLX2Q6PUV4 134 aaKnown RBP17.56■□□□□ 0.4
PTPN9-206ENST00000618819 CCDC73Q6ZRK6 1079 aa17.56■□□□□ 0.4
PTPN9-206ENST00000618819 STK11IPQ8N1F8 1099 aa17.56■□□□□ 0.4
PTPN9-206ENST00000618819 RRP1P56182 461 aaKnown RBP17.56■□□□□ 0.4
PTPN9-206ENST00000618819 CGNL1Q0VF96 1302 aa17.55■□□□□ 0.4
PTPN9-206ENST00000618819 CENPHQ9H3R5 247 aa17.55■□□□□ 0.4
PTPN9-206ENST00000618819 SPC24Q8NBT2 197 aa17.55■□□□□ 0.4
PTPN9-206ENST00000618819 CHMP4CQ96CF2 233 aa17.55■□□□□ 0.4
PTPN9-206ENST00000618819 KDM4AO75164 1064 aa17.55■□□□□ 0.4
PTPN9-206ENST00000618819 ZKSCAN1P17029 563 aaPredicted RBP17.55■□□□□ 0.4
PTPN9-206ENST00000618819 DYDC1Q8WWB3 177 aa17.55■□□□□ 0.4
PTPN9-206ENST00000618819 TRIM5Q9C035 493 aa17.55■□□□□ 0.4
PTPN9-206ENST00000618819 NEFHP12036 1026 aa17.54■□□□□ 0.4
PTPN9-206ENST00000618819 SMC2O95347 1197 aa17.54■□□□□ 0.4
PTPN9-206ENST00000618819 ANKRD62A6NC57 917 aa17.54■□□□□ 0.4
PTPN9-206ENST00000618819 LTV1Q96GA3 475 aaPredicted RBP17.54■□□□□ 0.4
PTPN9-206ENST00000618819 OFD1O75665 1012 aa17.54■□□□□ 0.4
PTPN9-206ENST00000618819 EPS15P42566 896 aa17.54■□□□□ 0.4
PTPN9-206ENST00000618819 REC8O95072 547 aa17.54■□□□□ 0.4
PTPN9-206ENST00000618819 NFXL1Q6ZNB6 911 aa17.54■□□□□ 0.4
PTPN9-206ENST00000618819 IBSPP21815 317 aaPredicted RBP17.54■□□□□ 0.4
PTPN9-206ENST00000618819 OLFM4Q6UX06 510 aa17.54■□□□□ 0.4
PTPN9-206ENST00000618819 GTF2E1P29083 439 aaPredicted RBP17.53■□□□□ 0.4
PTPN9-206ENST00000618819 MPNDQ8N594 471 aa17.53■□□□□ 0.4
PTPN9-206ENST00000618819 CAVIN1Q6NZI2 390 aaKnown RBP17.53■□□□□ 0.4
PTPN9-206ENST00000618819 CCNB3Q8WWL7 1395 aa17.53■□□□□ 0.4
PTPN9-206ENST00000618819 PDE3BQ13370 1112 aa17.53■□□□□ 0.4
PTPN9-206ENST00000618819 TAF3Q5VWG9 929 aa17.53■□□□□ 0.4
PTPN9-206ENST00000618819 KANK1Q14678 1352 aa17.52■□□□□ 0.4
PTPN9-206ENST00000618819 NUCB2P80303 420 aa17.52■□□□□ 0.39
PTPN9-206ENST00000618819 RBM25P49756 843 aaKnown RBP17.51■□□□□ 0.39
PTPN9-206ENST00000618819 CCDC27Q2M243 656 aa17.51■□□□□ 0.39
PTPN9-206ENST00000618819 SCRIBQ14160 1630 aa17.51■□□□□ 0.39
PTPN9-206ENST00000618819 ENOX2Q16206 610 aaKnown RBP17.51■□□□□ 0.39
PTPN9-206ENST00000618819 NAT10Q9H0A0 1025 aaKnown RBP17.51■□□□□ 0.39
PTPN9-206ENST00000618819 FAM193AP78312 1265 aa17.5■□□□□ 0.39
PTPN9-206ENST00000618819 RUFY2Q8WXA3 655 aa17.5■□□□□ 0.39
PTPN9-206ENST00000618819 CHMP4AQ9BY43 222 aa17.5■□□□□ 0.39
PTPN9-206ENST00000618819 PKD2Q13563 968 aa17.5■□□□□ 0.39
PTPN9-206ENST00000618819 UQCRHLA0A096LP55 91 aa17.5■□□□□ 0.39
PTPN9-206ENST00000618819 UQCRHP07919 91 aa17.5■□□□□ 0.39
PTPN9-206ENST00000618819 MYO6Q9UM54 1294 aa17.5■□□□□ 0.39
PTPN9-206ENST00000618819 BRPF1P55201 1214 aaPredicted RBP17.5■□□□□ 0.39
PTPN9-206ENST00000618819 PRDM10Q9NQV6 1147 aa17.5■□□□□ 0.39
PTPN9-206ENST00000618819 CCDC43Q96MW1 224 aaKnown RBP17.49■□□□□ 0.39
PTPN9-206ENST00000618819 FMNL2Q96PY5 1086 aa17.49■□□□□ 0.39
PTPN9-206ENST00000618819 TRAK2O60296 914 aa17.49■□□□□ 0.39
PTPN9-206ENST00000618819 ZKSCAN2Q63HK3 967 aa17.49■□□□□ 0.39
PTPN9-206ENST00000618819 DEF6Q9H4E7 631 aa17.49■□□□□ 0.39
PTPN9-206ENST00000618819 NGEFQ8N5V2 710 aa17.49■□□□□ 0.39
PTPN9-206ENST00000618819 ZRSR2Q15696 482 aaKnown RBP17.48■□□□□ 0.39
PTPN9-206ENST00000618819 CTDP1Q9Y5B0 961 aaPredicted RBP17.48■□□□□ 0.39
PTPN9-206ENST00000618819 EEA1Q15075 1411 aa17.48■□□□□ 0.39
PTPN9-206ENST00000618819 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.48■□□□□ 0.39
PTPN9-206ENST00000618819 SAMD1Q6SPF0 538 aaPredicted RBP17.47■□□□□ 0.39
PTPN9-206ENST00000618819 NEXNQ0ZGT2 675 aa17.47■□□□□ 0.39
PTPN9-206ENST00000618819 GOLGA6L7A0A1B0GV03 622 aa17.47■□□□□ 0.39
PTPN9-206ENST00000618819 TAX1BP1Q86VP1 789 aa17.47■□□□□ 0.39
PTPN9-206ENST00000618819 NLRP13Q86W25 1043 aa17.47■□□□□ 0.39
PTPN9-206ENST00000618819 SDF4Q9BRK5 362 aa17.47■□□□□ 0.39
PTPN9-206ENST00000618819 TSPY26PQ9H489 355 aa17.47■□□□□ 0.39
PTPN9-206ENST00000618819 LMOD3Q0VAK6 560 aa17.47■□□□□ 0.39
PTPN9-206ENST00000618819 GOLGA6L10A6NI86 522 aa17.46■□□□□ 0.39
PTPN9-206ENST00000618819 SETD5Q9C0A6 1442 aa17.46■□□□□ 0.39
PTPN9-206ENST00000618819 TRIM34Q9BYJ4 488 aa17.46■□□□□ 0.39
PTPN9-206ENST00000618819 C22orf23Q9BZE7 217 aa17.46■□□□□ 0.39
PTPN9-206ENST00000618819 FAM177A1Q8N128 213 aaPredicted RBP17.45■□□□□ 0.38
PTPN9-206ENST00000618819 NECTIN2Q92692 538 aa17.45■□□□□ 0.38
PTPN9-206ENST00000618819 IFIT2P09913 472 aaKnown RBP17.45■□□□□ 0.38
PTPN9-206ENST00000618819 GIMAP7Q8NHV1 300 aa17.45■□□□□ 0.38
PTPN9-206ENST00000618819 HDGFP51858 240 aaKnown RBP17.45■□□□□ 0.38
PTPN9-206ENST00000618819 TRDNQ13061 729 aa17.45■□□□□ 0.38
PTPN9-206ENST00000618819 AMOTL1Q8IY63 956 aa17.44■□□□□ 0.38
PTPN9-206ENST00000618819 SEPT7Q16181 437 aaKnown RBP17.44■□□□□ 0.38
PTPN9-206ENST00000618819 HMGN5P82970 282 aaKnown RBP17.44■□□□□ 0.38
PTPN9-206ENST00000618819 CLASRPQ8N2M8 674 aaKnown RBP17.44■□□□□ 0.38
PTPN9-206ENST00000618819 TICAM2Q86XR7 235 aa17.43■□□□□ 0.38
PTPN9-206ENST00000618819 AMPHP49418 695 aa17.43■□□□□ 0.38
PTPN9-206ENST00000618819 RNF20Q5VTR2 975 aa17.43■□□□□ 0.38
PTPN9-206ENST00000618819 INCENPQ9NQS7 918 aa17.43■□□□□ 0.38
PTPN9-206ENST00000618819 SAFBQ15424 915 aaKnown RBP eCLIP17.42■□□□□ 0.38
PTPN9-206ENST00000618819 ERICH2A1L162 156 aa17.42■□□□□ 0.38
PTPN9-206ENST00000618819 PRPF40AO75400 957 aaKnown RBP17.42■□□□□ 0.38
PTPN9-206ENST00000618819 GPATCH11Q8N954 259 aa17.42■□□□□ 0.38
PTPN9-206ENST00000618819 INTS3Q68E01 1043 aaKnown RBP17.42■□□□□ 0.38
PTPN9-206ENST00000618819 NOL10Q9BSC4 688 aaKnown RBP17.42■□□□□ 0.38
PTPN9-206ENST00000618819 USP8P40818 1118 aa17.41■□□□□ 0.38
PTPN9-206ENST00000618819 GGT6Q6P531 493 aa17.41■□□□□ 0.38
PTPN9-206ENST00000618819 SMARCE1Q969G3 411 aa17.41■□□□□ 0.38
PTPN9-206ENST00000618819 SLTMQ9NWH9 1034 aaKnown RBP eCLIP17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms