RNA–Protein interactions for RNA: ENST00000616390.1

CACNA1C-231, Transcript of calcium voltage-gated channel subunit alpha1 C, human

TSL 2 BASIC

Gene CACNA1C, Length 2,833 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CACNA1C-231	ENST00000616390	LAMC1	P11047	1609 aa		18.46	■□□□□ 0.55
CACNA1C-231	ENST00000616390	MADD	Q8WXG6	1647 aa		18.46	■□□□□ 0.55
CACNA1C-231	ENST00000616390	ADGRF5	Q8IZF2	1346 aa		18.46	■□□□□ 0.55
CACNA1C-231	ENST00000616390	TRPM2	O94759	1503 aa		18.45	■□□□□ 0.54
CACNA1C-231	ENST00000616390	WASHC2C	Q9Y4E1	1318 aa		18.44	■□□□□ 0.54
CACNA1C-231	ENST00000616390	CEP152	O94986	1710 aa		18.44	■□□□□ 0.54
CACNA1C-231	ENST00000616390	PLPPR3	Q6T4P5	718 aa		18.44	■□□□□ 0.54
CACNA1C-231	ENST00000616390	PPP2R1A	P30153	589 aa		18.43	■□□□□ 0.54
CACNA1C-231	ENST00000616390	WDR43	Q15061	677 aa	Known RBP eCLIP	18.43	■□□□□ 0.54
CACNA1C-231	ENST00000616390	FANCI	Q9NVI1	1328 aa		18.42	■□□□□ 0.54
CACNA1C-231	ENST00000616390	RNF17	Q9BXT8	1623 aa	Known RBP	18.42	■□□□□ 0.54
CACNA1C-231	ENST00000616390	PTPRT	O14522	1441 aa		18.42	■□□□□ 0.54
CACNA1C-231	ENST00000616390	CDCA8	Q53HL2	280 aa		18.41	■□□□□ 0.54
CACNA1C-231	ENST00000616390	NUTM2D	Q5VT03	806 aa	Predicted RBP	18.41	■□□□□ 0.54
CACNA1C-231	ENST00000616390	ABCA9	Q8IUA7	1624 aa		18.41	■□□□□ 0.54
CACNA1C-231	ENST00000616390	SCAF11	Q99590	1463 aa	Known RBP	18.41	■□□□□ 0.54
CACNA1C-231	ENST00000616390	TET3	O43151	1660 aa		18.41	■□□□□ 0.54
CACNA1C-231	ENST00000616390	AMER1	Q5JTC6	1135 aa	Predicted RBP	18.4	■□□□□ 0.54
CACNA1C-231	ENST00000616390	ARAP3	Q8WWN8	1544 aa		18.4	■□□□□ 0.54
CACNA1C-231	ENST00000616390	INO80	Q9ULG1	1556 aa	Predicted RBP	18.39	■□□□□ 0.53
CACNA1C-231	ENST00000616390	PDE3B	Q13370	1112 aa		18.39	■□□□□ 0.53
CACNA1C-231	ENST00000616390	CCDC146	Q8IYE0	955 aa		18.39	■□□□□ 0.53
CACNA1C-231	ENST00000616390	IQGAP1	P46940	1657 aa		18.39	■□□□□ 0.53
CACNA1C-231	ENST00000616390	DEPDC5	O75140	1603 aa		18.38	■□□□□ 0.53
CACNA1C-231	ENST00000616390	OSCAR	Q8IYS5	282 aa		18.38	■□□□□ 0.53
CACNA1C-231	ENST00000616390	TRAK1	Q9UPV9	953 aa		18.37	■□□□□ 0.53
CACNA1C-231	ENST00000616390	RTN4	Q9NQC3	1192 aa	Known RBP	18.36	■□□□□ 0.53
CACNA1C-231	ENST00000616390	EIF3A	Q14152	1382 aa	Known RBP	18.36	■□□□□ 0.53
CACNA1C-231	ENST00000616390	TMEM132E	Q6IEE7	984 aa		18.36	■□□□□ 0.53
CACNA1C-231	ENST00000616390	RAPGEF3	O95398	923 aa		18.35	■□□□□ 0.53
CACNA1C-231	ENST00000616390	TNNT2	P45379	298 aa	Predicted RBP	18.35	■□□□□ 0.53
CACNA1C-231	ENST00000616390	KIDINS220	Q9ULH0	1771 aa		18.34	■□□□□ 0.53
CACNA1C-231	ENST00000616390	KIF1B	O60333	1816 aa		18.34	■□□□□ 0.53
CACNA1C-231	ENST00000616390	STAC3	Q96MF2	364 aa		18.34	■□□□□ 0.53
CACNA1C-231	ENST00000616390	BLM	P54132	1417 aa	Predicted RBP	18.33	■□□□□ 0.52
CACNA1C-231	ENST00000616390	CD109	Q6YHK3	1445 aa		18.33	■□□□□ 0.52
CACNA1C-231	ENST00000616390	MROH1	Q8NDA8	1641 aa		18.32	■□□□□ 0.52
CACNA1C-231	ENST00000616390	SKAP1	Q86WV1	359 aa		18.31	■□□□□ 0.52
CACNA1C-231	ENST00000616390	NOS1	P29475	1434 aa		18.31	■□□□□ 0.52
CACNA1C-231	ENST00000616390	CRBN	Q96SW2	442 aa		18.31	■□□□□ 0.52
CACNA1C-231	ENST00000616390	VWDE	Q8N2E2	1590 aa		18.31	■□□□□ 0.52
CACNA1C-231	ENST00000616390	C20orf194	Q5TEA3	1177 aa		18.3	■□□□□ 0.52
CACNA1C-231	ENST00000616390	CARD14	Q9BXL6	1004 aa		18.3	■□□□□ 0.52
CACNA1C-231	ENST00000616390	ZNF518A	Q6AHZ1	1483 aa		18.3	■□□□□ 0.52
CACNA1C-231	ENST00000616390	PLEKHH1	Q9ULM0	1364 aa		18.3	■□□□□ 0.52
CACNA1C-231	ENST00000616390	PPRC1	Q5VV67	1664 aa	Known RBP	18.29	■□□□□ 0.52
CACNA1C-231	ENST00000616390	NPM2	Q86SE8	214 aa	Known RBP	18.29	■□□□□ 0.52
CACNA1C-231	ENST00000616390	ABCA6	Q8N139	1617 aa		18.29	■□□□□ 0.52
CACNA1C-231	ENST00000616390	ASXL1	Q8IXJ9	1541 aa		18.29	■□□□□ 0.52
CACNA1C-231	ENST00000616390	MROH2A	A6NES4	1674 aa		18.29	■□□□□ 0.52
CACNA1C-231	ENST00000616390	MAP3K4	Q9Y6R4	1608 aa		18.28	■□□□□ 0.52
CACNA1C-231	ENST00000616390	SAFB2	Q14151	953 aa	Known RBP eCLIP	18.28	■□□□□ 0.52
CACNA1C-231	ENST00000616390	SYNM	O15061	1565 aa		18.28	■□□□□ 0.52
CACNA1C-231	ENST00000616390	EFCAB6	Q5THR3	1501 aa		18.27	■□□□□ 0.52
CACNA1C-231	ENST00000616390	APAF1	O14727	1248 aa		18.27	■□□□□ 0.52
CACNA1C-231	ENST00000616390	KDM5A	P29375	1690 aa	Known RBP	18.27	■□□□□ 0.52
CACNA1C-231	ENST00000616390	MYOM1	P52179	1685 aa		18.26	■□□□□ 0.51
CACNA1C-231	ENST00000616390	PDIA4	P13667	645 aa	Known RBP	18.26	■□□□□ 0.51
CACNA1C-231	ENST00000616390	SLC12A5	Q9H2X9	1139 aa		18.26	■□□□□ 0.51
CACNA1C-231	ENST00000616390	ZMYM4	Q5VZL5	1548 aa		18.26	■□□□□ 0.51
CACNA1C-231	ENST00000616390	ERVK-7	P63135	1459 aa		18.26	■□□□□ 0.51
CACNA1C-231	ENST00000616390	CENPJ	Q9HC77	1338 aa	Predicted RBP	18.26	■□□□□ 0.51
CACNA1C-231	ENST00000616390	GOLGA2	Q08379	1002 aa		18.26	■□□□□ 0.51
CACNA1C-231	ENST00000616390	NPAT	Q14207	1427 aa		18.24	■□□□□ 0.51
CACNA1C-231	ENST00000616390	NEUROD2	Q15784	382 aa		18.24	■□□□□ 0.51
CACNA1C-231	ENST00000616390	DUSP27	Q5VZP5	1158 aa		18.24	■□□□□ 0.51
CACNA1C-231	ENST00000616390	PAK3	O75914	559 aa	Predicted RBP	18.23	■□□□□ 0.51
CACNA1C-231	ENST00000616390	ANP32A	P39687	249 aa	Known RBP	18.22	■□□□□ 0.51
CACNA1C-231	ENST00000616390	SPINK5	Q9NQ38	1064 aa	Predicted RBP	18.22	■□□□□ 0.51
CACNA1C-231	ENST00000616390	POGZ	Q7Z3K3	1410 aa		18.21	■□□□□ 0.51
CACNA1C-231	ENST00000616390	MYOM2	P54296	1465 aa		18.21	■□□□□ 0.51
CACNA1C-231	ENST00000616390	KIAA1210	Q9ULL0	1709 aa		18.21	■□□□□ 0.51
CACNA1C-231	ENST00000616390	STK26	Q9P289	416 aa		18.21	■□□□□ 0.51
CACNA1C-231	ENST00000616390	MORC1	Q86VD1	984 aa		18.2	■□□□□ 0.5
CACNA1C-231	ENST00000616390	NOP58	Q9Y2X3	529 aa	Known RBP	18.2	■□□□□ 0.5
CACNA1C-231	ENST00000616390	AEBP2	Q6ZN18	517 aa	Predicted RBP	18.2	■□□□□ 0.5
CACNA1C-231	ENST00000616390	NBR1	Q14596	966 aa		18.19	■□□□□ 0.5
CACNA1C-231	ENST00000616390	C14orf93	Q9H972	538 aa	Known RBP	18.19	■□□□□ 0.5
CACNA1C-231	ENST00000616390	PIK3C2G	O75747	1445 aa		18.18	■□□□□ 0.5
CACNA1C-231	ENST00000616390	PDE4C	Q08493	712 aa		18.18	■□□□□ 0.5
CACNA1C-231	ENST00000616390	RRP7A	Q9Y3A4	280 aa	Known RBP	18.18	■□□□□ 0.5
CACNA1C-231	ENST00000616390	DMRT2	Q9Y5R5	561 aa		18.18	■□□□□ 0.5
CACNA1C-231	ENST00000616390	IFT172	Q9UG01	1749 aa		18.17	■□□□□ 0.5
CACNA1C-231	ENST00000616390	NSD3	Q9BZ95	1437 aa		18.17	■□□□□ 0.5
CACNA1C-231	ENST00000616390	SLFN5	Q08AF3	891 aa		18.17	■□□□□ 0.5
CACNA1C-231	ENST00000616390	FRMPD1	Q5SYB0	1578 aa		18.17	■□□□□ 0.5
CACNA1C-231	ENST00000616390	INSR	P06213	1382 aa		18.16	■□□□□ 0.5
CACNA1C-231	ENST00000616390	CYB5RL	Q6IPT4	315 aa		18.16	■□□□□ 0.5
CACNA1C-231	ENST00000616390	PDE4A	P27815	886 aa		18.16	■□□□□ 0.5
CACNA1C-231	ENST00000616390	HECW2	Q9P2P5	1572 aa		18.15	■□□□□ 0.5
CACNA1C-231	ENST00000616390	BCAR3	O75815	825 aa		18.15	■□□□□ 0.5
CACNA1C-231	ENST00000616390	ZNF521	Q96K83	1311 aa		18.15	■□□□□ 0.5
CACNA1C-231	ENST00000616390	TCERG1	O14776	1098 aa	Known RBP	18.15	■□□□□ 0.5
CACNA1C-231	ENST00000616390	CABP2	Q9NPB3	220 aa		18.15	■□□□□ 0.5
CACNA1C-231	ENST00000616390	ADGRB3	O60242	1522 aa		18.14	■□□□□ 0.49
CACNA1C-231	ENST00000616390	IDI1	Q13907	227 aa		18.14	■□□□□ 0.49
CACNA1C-231	ENST00000616390	IPO9	Q96P70	1041 aa	Known RBP	18.13	■□□□□ 0.49
CACNA1C-231	ENST00000616390	NPC1L1	Q9UHC9	1359 aa		18.13	■□□□□ 0.49
CACNA1C-231	ENST00000616390	MLH3	Q9UHC1	1453 aa		18.13	■□□□□ 0.49
CACNA1C-231	ENST00000616390	ZBTB47	Q9UFB7	747 aa	Predicted RBP	18.13	■□□□□ 0.49

Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms