RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 NGDNQ8NEJ9 315 aaKnown RBP11.37□□□□□ -0.59
PDLIM5-222ENST00000615540 MAGI3Q5TCQ9 1506 aa11.36□□□□□ -0.59
PDLIM5-222ENST00000615540 RPRD2Q5VT52 1461 aaKnown RBP11.36□□□□□ -0.59
PDLIM5-222ENST00000615540 IPO9Q96P70 1041 aaKnown RBP11.36□□□□□ -0.59
PDLIM5-222ENST00000615540 EID1Q9Y6B2 187 aa11.36□□□□□ -0.59
PDLIM5-222ENST00000615540 E9PSI1 815 aa11.36□□□□□ -0.59
PDLIM5-222ENST00000615540 RWDD1Q9H446 243 aaPredicted RBP11.36□□□□□ -0.59
PDLIM5-222ENST00000615540 SYCP2Q9BX26 1530 aa11.36□□□□□ -0.59
PDLIM5-222ENST00000615540 TCOF1Q13428 1488 aaKnown RBP11.35□□□□□ -0.59
PDLIM5-222ENST00000615540 HMOX1P09601 288 aa11.35□□□□□ -0.59
PDLIM5-222ENST00000615540 SAMD9Q5K651 1589 aa11.35□□□□□ -0.59
PDLIM5-222ENST00000615540 ZNF428Q96B54 188 aa11.35□□□□□ -0.59
PDLIM5-222ENST00000615540 SLKQ9H2G2 1235 aaPredicted RBP11.35□□□□□ -0.59
PDLIM5-222ENST00000615540 TAOK2Q9UL54 1235 aa11.35□□□□□ -0.59
PDLIM5-222ENST00000615540 PDE4AP27815 886 aa11.34□□□□□ -0.59
PDLIM5-222ENST00000615540 IPO8O15397 1037 aaKnown RBP11.34□□□□□ -0.59
PDLIM5-222ENST00000615540 PMFBP1Q8TBY8 1022 aa11.34□□□□□ -0.59
PDLIM5-222ENST00000615540 DISP1Q96F81 1524 aa11.34□□□□□ -0.59
PDLIM5-222ENST00000615540 SLC4A10Q6U841 1118 aa11.34□□□□□ -0.59
PDLIM5-222ENST00000615540 COG3Q96JB2 828 aa11.33□□□□□ -0.59
PDLIM5-222ENST00000615540 CEP170Q5SW79 1584 aa11.33□□□□□ -0.59
PDLIM5-222ENST00000615540 PANK1Q8TE04 598 aa11.33□□□□□ -0.6
PDLIM5-222ENST00000615540 PNISRQ8TF01 805 aaKnown RBP11.33□□□□□ -0.6
PDLIM5-222ENST00000615540 SLC12A5Q9H2X9 1139 aa11.33□□□□□ -0.6
PDLIM5-222ENST00000615540 AMPHP49418 695 aa11.33□□□□□ -0.6
PDLIM5-222ENST00000615540 ADGRL1O94910 1474 aa11.33□□□□□ -0.6
PDLIM5-222ENST00000615540 HSCBQ8IWL3 235 aa11.33□□□□□ -0.6
PDLIM5-222ENST00000615540 PRAM1Q96QH2 718 aa11.32□□□□□ -0.6
PDLIM5-222ENST00000615540 FOXD4L1Q9NU39 408 aa11.32□□□□□ -0.6
PDLIM5-222ENST00000615540 FAM135AQ9P2D6 1515 aa11.32□□□□□ -0.6
PDLIM5-222ENST00000615540 RIPK4P57078 832 aa11.32□□□□□ -0.6
PDLIM5-222ENST00000615540 DISP3Q9P2K9 1392 aa11.32□□□□□ -0.6
PDLIM5-222ENST00000615540 TARBP1Q13395 1621 aaKnown RBP11.32□□□□□ -0.6
PDLIM5-222ENST00000615540 RUNDC1Q96C34 613 aa11.32□□□□□ -0.6
PDLIM5-222ENST00000615540 DIAPH1O60610 1272 aaKnown RBP11.31□□□□□ -0.6
PDLIM5-222ENST00000615540 NUTM2GQ5VZR2 741 aa11.31□□□□□ -0.6
PDLIM5-222ENST00000615540 MTHFSP49914 203 aa11.31□□□□□ -0.6
PDLIM5-222ENST00000615540 CENPQQ7L2Z9 268 aaPredicted RBP11.31□□□□□ -0.6
PDLIM5-222ENST00000615540 NECTIN2Q92692 538 aa11.3□□□□□ -0.6
PDLIM5-222ENST00000615540 DNMT1P26358 1616 aaKnown RBP11.3□□□□□ -0.6
PDLIM5-222ENST00000615540 CHMP4BQ9H444 224 aaKnown RBP11.3□□□□□ -0.6
PDLIM5-222ENST00000615540 CALD1Q05682 793 aaKnown RBP11.3□□□□□ -0.6
PDLIM5-222ENST00000615540 KDM6BO15054 1643 aa11.29□□□□□ -0.6
PDLIM5-222ENST00000615540 CSB-PGBD3P0DP91 1061 aa11.29□□□□□ -0.6
PDLIM5-222ENST00000615540 BCAR3O75815 825 aa11.29□□□□□ -0.6
PDLIM5-222ENST00000615540 SMG6Q86US8 1419 aaKnown RBP11.28□□□□□ -0.6
PDLIM5-222ENST00000615540 FANCAO15360 1455 aa11.28□□□□□ -0.6
PDLIM5-222ENST00000615540 ADGRF5Q8IZF2 1346 aa11.28□□□□□ -0.6
PDLIM5-222ENST00000615540 TXNDC2Q86VQ3 553 aa11.28□□□□□ -0.6
PDLIM5-222ENST00000615540 ZKSCAN2Q63HK3 967 aa11.27□□□□□ -0.6
PDLIM5-222ENST00000615540 CD109Q6YHK3 1445 aa11.27□□□□□ -0.61
PDLIM5-222ENST00000615540 CDK19Q9BWU1 502 aa11.27□□□□□ -0.61
PDLIM5-222ENST00000615540 SKAP1Q86WV1 359 aa11.27□□□□□ -0.61
PDLIM5-222ENST00000615540 GZF1Q9H116 711 aaPredicted RBP11.27□□□□□ -0.61
PDLIM5-222ENST00000615540 GOLGA6L22H0YM25 854 aa11.26□□□□□ -0.61
PDLIM5-222ENST00000615540 TSR2Q969E8 191 aaKnown RBP11.26□□□□□ -0.61
PDLIM5-222ENST00000615540 FAM161AQ3B820 660 aa11.26□□□□□ -0.61
PDLIM5-222ENST00000615540 ZNF330Q9Y3S2 320 aaPredicted RBP11.26□□□□□ -0.61
PDLIM5-222ENST00000615540 NSD3Q9BZ95 1437 aa11.26□□□□□ -0.61
PDLIM5-222ENST00000615540 TCP11L2Q8N4U5 519 aa11.25□□□□□ -0.61
PDLIM5-222ENST00000615540 ANKRD45Q5TZF3 282 aa11.25□□□□□ -0.61
PDLIM5-222ENST00000615540 NOL8Q76FK4 1167 aaKnown RBP11.25□□□□□ -0.61
PDLIM5-222ENST00000615540 CABP1Q9NZU7 370 aa11.25□□□□□ -0.61
PDLIM5-222ENST00000615540 PZPP20742 1482 aa11.24□□□□□ -0.61
PDLIM5-222ENST00000615540 STK31Q9BXU1 1019 aa11.24□□□□□ -0.61
PDLIM5-222ENST00000615540 GCC2Q8IWJ2 1684 aa11.24□□□□□ -0.61
PDLIM5-222ENST00000615540 TRAPPC8Q9Y2L5 1435 aa11.23□□□□□ -0.61
PDLIM5-222ENST00000615540 RBM33Q96EV2 1170 aaKnown RBP11.23□□□□□ -0.61
PDLIM5-222ENST00000615540 NOS1P29475 1434 aa11.23□□□□□ -0.61
PDLIM5-222ENST00000615540 LMOD3Q0VAK6 560 aa11.23□□□□□ -0.61
PDLIM5-222ENST00000615540 DZIP1LQ8IYY4 767 aaKnown RBP11.23□□□□□ -0.61
PDLIM5-222ENST00000615540 NAP1L2Q9ULW6 460 aaPredicted RBP11.23□□□□□ -0.61
PDLIM5-222ENST00000615540 KCNJ4P48050 445 aa11.22□□□□□ -0.61
PDLIM5-222ENST00000615540 FBXO31Q5XUX0 539 aaPredicted RBP11.22□□□□□ -0.61
PDLIM5-222ENST00000615540 TRIM6-TRIM34B2RNG4 842 aa11.22□□□□□ -0.61
PDLIM5-222ENST00000615540 FANCIQ9NVI1 1328 aa11.22□□□□□ -0.61
PDLIM5-222ENST00000615540 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.22□□□□□ -0.61
PDLIM5-222ENST00000615540 RALGAPBQ86X10 1494 aa11.22□□□□□ -0.61
PDLIM5-222ENST00000615540 STAC3Q96MF2 364 aa11.22□□□□□ -0.61
PDLIM5-222ENST00000615540 DUOX2Q9NRD8 1548 aa11.21□□□□□ -0.61
PDLIM5-222ENST00000615540 ADGBQ8N7X0 1667 aa11.21□□□□□ -0.61
PDLIM5-222ENST00000615540 TRIM44Q96DX7 344 aaPredicted RBP11.21□□□□□ -0.61
PDLIM5-222ENST00000615540 PLCH2O75038 1416 aa11.21□□□□□ -0.62
PDLIM5-222ENST00000615540 C20orf194Q5TEA3 1177 aa11.21□□□□□ -0.62
PDLIM5-222ENST00000615540 WAPLQ7Z5K2 1190 aa11.21□□□□□ -0.62
PDLIM5-222ENST00000615540 C1orf115Q9H7X2 142 aa11.21□□□□□ -0.62
PDLIM5-222ENST00000615540 EIF2S2P20042 333 aaKnown RBP11.2□□□□□ -0.62
PDLIM5-222ENST00000615540 EXOSC9Q06265 439 aaKnown RBP11.2□□□□□ -0.62
PDLIM5-222ENST00000615540 PRKAR2BP31323 418 aa11.2□□□□□ -0.62
PDLIM5-222ENST00000615540 RRS1Q15050 365 aaKnown RBP11.2□□□□□ -0.62
PDLIM5-222ENST00000615540 AMER1Q5JTC6 1135 aaPredicted RBP11.2□□□□□ -0.62
PDLIM5-222ENST00000615540 ASXL2Q76L83 1435 aa11.2□□□□□ -0.62
PDLIM5-222ENST00000615540 FOXD4L5Q5VV16 416 aaPredicted RBP11.19□□□□□ -0.62
PDLIM5-222ENST00000615540 FOXD4L4Q8WXT5 416 aaPredicted RBP11.19□□□□□ -0.62
PDLIM5-222ENST00000615540 CCDC9Q9Y3X0 531 aaKnown RBP11.19□□□□□ -0.62
PDLIM5-222ENST00000615540 PRAG1Q86YV5 1406 aa11.19□□□□□ -0.62
PDLIM5-222ENST00000615540 NOB1Q9ULX3 412 aaKnown RBP11.19□□□□□ -0.62
PDLIM5-222ENST00000615540 CHMP3Q9Y3E7 222 aa11.18□□□□□ -0.62
PDLIM5-222ENST00000615540 NUP160Q12769 1436 aa11.18□□□□□ -0.62
PDLIM5-222ENST00000615540 KDM5BQ9UGL1 1544 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms