RNA–Protein interactions for RNA: ENST00000609587.1

SMCHD1-213, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

Gene SMCHD1, Length 460 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-213ENST00000609587 SLC19A1P41440 591 aa10.66□□□□□ -0.7
SMCHD1-213ENST00000609587 EYA1Q99502 592 aa10.66□□□□□ -0.7
SMCHD1-213ENST00000609587 PCDHB3Q9Y5E6 796 aa10.66□□□□□ -0.7
SMCHD1-213ENST00000609587 POTECB2RU33 542 aa10.65□□□□□ -0.7
SMCHD1-213ENST00000609587 PKDCCQ504Y2 493 aa10.64□□□□□ -0.71
SMCHD1-213ENST00000609587 PRR20EP86478 221 aa10.63□□□□□ -0.71
SMCHD1-213ENST00000609587 PRR20CP86479 221 aa10.63□□□□□ -0.71
SMCHD1-213ENST00000609587 PRR20DP86480 221 aa10.63□□□□□ -0.71
SMCHD1-213ENST00000609587 PRR20BP86481 221 aa10.63□□□□□ -0.71
SMCHD1-213ENST00000609587 PRR20AP86496 221 aa10.63□□□□□ -0.71
SMCHD1-213ENST00000609587 SPRYD7Q5W111 196 aa10.63□□□□□ -0.71
SMCHD1-213ENST00000609587 PRR14Q9BWN1 585 aa10.62□□□□□ -0.71
SMCHD1-213ENST00000609587 DGAT1O75907 488 aa10.61□□□□□ -0.71
SMCHD1-213ENST00000609587 SLC4A3P48751 1232 aa10.6□□□□□ -0.71
SMCHD1-213ENST00000609587 ZNF598Q86UK7 904 aaKnown RBP10.6□□□□□ -0.71
SMCHD1-213ENST00000609587 ANKLE1Q8NAG6 615 aa10.6□□□□□ -0.71
SMCHD1-213ENST00000609587 S1PR4O95977 384 aa10.59□□□□□ -0.71
SMCHD1-213ENST00000609587 LIAT1Q6ZQX7 453 aa10.59□□□□□ -0.71
SMCHD1-213ENST00000609587 PPEF1O14829 653 aaPredicted RBP10.58□□□□□ -0.72
SMCHD1-213ENST00000609587 FAM187AA6NFU0 413 aa10.57□□□□□ -0.72
SMCHD1-213ENST00000609587 TNFRSF10AO00220 468 aa10.57□□□□□ -0.72
SMCHD1-213ENST00000609587 ZNF697Q5TEC3 545 aa10.57□□□□□ -0.72
SMCHD1-213ENST00000609587 GDF9O60383 454 aa10.55□□□□□ -0.72
SMCHD1-213ENST00000609587 HAP1P54257 671 aaPredicted RBP10.55□□□□□ -0.72
SMCHD1-213ENST00000609587 ST8SIA5O15466 376 aa10.54□□□□□ -0.72
SMCHD1-213ENST00000609587 DNAJB2P25686 324 aa10.54□□□□□ -0.72
SMCHD1-213ENST00000609587 LCE2AQ5TA79 106 aaPredicted RBP10.54□□□□□ -0.72
SMCHD1-213ENST00000609587 TMEM134Q9H6X4 195 aa10.54□□□□□ -0.72
SMCHD1-213ENST00000609587 WDR70Q9NW82 654 aa10.54□□□□□ -0.72
SMCHD1-213ENST00000609587 PLA2G2CQ5R387 149 aa10.53□□□□□ -0.72
SMCHD1-213ENST00000609587 ACTN4O43707 911 aaKnown RBP10.52□□□□□ -0.73
SMCHD1-213ENST00000609587 CFHP08603 1231 aa10.52□□□□□ -0.73
SMCHD1-213ENST00000609587 TSHZ2Q9NRE2 1034 aa10.52□□□□□ -0.73
SMCHD1-213ENST00000609587 ADH1BP00325 375 aa10.51□□□□□ -0.73
SMCHD1-213ENST00000609587 MLLT3P42568 568 aaPredicted RBP10.49□□□□□ -0.73
SMCHD1-213ENST00000609587 PTGDRQ13258 359 aa10.49□□□□□ -0.73
SMCHD1-213ENST00000609587 KMT5BQ4FZB7 885 aa10.49□□□□□ -0.73
SMCHD1-213ENST00000609587 AAASQ9NRG9 546 aa10.49□□□□□ -0.73
SMCHD1-213ENST00000609587 ADGRG1Q9Y653 693 aa10.49□□□□□ -0.73
SMCHD1-213ENST00000609587 TREML4Q6UXN2 200 aa10.48□□□□□ -0.73
SMCHD1-213ENST00000609587 RCCD1A6NED2 376 aa10.46□□□□□ -0.73
SMCHD1-213ENST00000609587 SLC10A3P09131 477 aa10.46□□□□□ -0.73
SMCHD1-213ENST00000609587 FAM161AQ3B820 660 aa10.46□□□□□ -0.73
SMCHD1-213ENST00000609587 RBM46Q8TBY0 533 aaKnown RBP10.46□□□□□ -0.73
SMCHD1-213ENST00000609587 PKD2L1Q9P0L9 805 aa10.46□□□□□ -0.73
SMCHD1-213ENST00000609587 SLC6A16Q9GZN6 736 aa10.45□□□□□ -0.74
SMCHD1-213ENST00000609587 NR1I2O75469 434 aa10.43□□□□□ -0.74
SMCHD1-213ENST00000609587 CRIPAKQ8N1N5 446 aa10.41□□□□□ -0.74
SMCHD1-213ENST00000609587 DACH1Q9UI36 760 aa10.41□□□□□ -0.74
SMCHD1-213ENST00000609587 FOXC1Q12948 553 aa10.4□□□□□ -0.74
SMCHD1-213ENST00000609587 LMOD2Q6P5Q4 547 aa10.39□□□□□ -0.75
SMCHD1-213ENST00000609587 VSIG10Q8N0Z9 540 aa10.38□□□□□ -0.75
SMCHD1-213ENST00000609587 PUS10Q3MIT2 529 aaKnown RBP10.37□□□□□ -0.75
SMCHD1-213ENST00000609587 SCUBE3Q8IX30 993 aa10.37□□□□□ -0.75
SMCHD1-213ENST00000609587 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.36□□□□□ -0.75
SMCHD1-213ENST00000609587 TOR4AQ9NXH8 423 aa10.36□□□□□ -0.75
SMCHD1-213ENST00000609587 AVPP01185 164 aa10.35□□□□□ -0.75
SMCHD1-213ENST00000609587 SPSB2Q99619 263 aa10.35□□□□□ -0.75
SMCHD1-213ENST00000609587 GMPR2Q9P2T1 348 aaKnown RBP10.35□□□□□ -0.75
SMCHD1-213ENST00000609587 KCNV2Q8TDN2 545 aa10.34□□□□□ -0.75
SMCHD1-213ENST00000609587 ARHGEF1Q92888 912 aaKnown RBP10.34□□□□□ -0.75
SMCHD1-213ENST00000609587 NUTM2FA1L443 756 aa10.32□□□□□ -0.76
SMCHD1-213ENST00000609587 WFS1O76024 890 aa10.32□□□□□ -0.76
SMCHD1-213ENST00000609587 RPIAP49247 311 aa10.32□□□□□ -0.76
SMCHD1-213ENST00000609587 PXYLP1Q8TE99 480 aa10.32□□□□□ -0.76
SMCHD1-213ENST00000609587 FCF1Q9Y324 198 aaKnown RBP10.32□□□□□ -0.76
SMCHD1-213ENST00000609587 NFX1Q12986 1120 aaKnown RBP10.31□□□□□ -0.76
SMCHD1-213ENST00000609587 KDM2AQ9Y2K7 1162 aa10.31□□□□□ -0.76
SMCHD1-213ENST00000609587 AXIN1O15169 862 aa10.3□□□□□ -0.76
SMCHD1-213ENST00000609587 C11orf95C9JLR9 678 aaPredicted RBP10.29□□□□□ -0.76
SMCHD1-213ENST00000609587 THAP11Q96EK4 314 aa10.29□□□□□ -0.76
SMCHD1-213ENST00000609587 FCHSD2O94868 740 aa10.28□□□□□ -0.76
SMCHD1-213ENST00000609587 SMCPP49901 116 aaPredicted RBP10.28□□□□□ -0.76
SMCHD1-213ENST00000609587 CTC1Q2NKJ3 1217 aa10.28□□□□□ -0.76
SMCHD1-213ENST00000609587 LCE2CQ5TA81 110 aa10.28□□□□□ -0.76
SMCHD1-213ENST00000609587 CYP4X1Q8N118 509 aa10.28□□□□□ -0.76
SMCHD1-213ENST00000609587 PRDM9Q9NQV7 894 aa10.28□□□□□ -0.76
SMCHD1-213ENST00000609587 MORN1Q5T089 497 aa10.27□□□□□ -0.77
SMCHD1-213ENST00000609587 METTL3Q86U44 580 aaKnown RBP10.27□□□□□ -0.77
SMCHD1-213ENST00000609587 WIPF1O43516 503 aa10.26□□□□□ -0.77
SMCHD1-213ENST00000609587 STK17AQ9UEE5 414 aa10.26□□□□□ -0.77
SMCHD1-213ENST00000609587 FAM160A2Q8N612 972 aaPredicted RBP10.25□□□□□ -0.77
SMCHD1-213ENST00000609587 OATP04181 439 aa10.24□□□□□ -0.77
SMCHD1-213ENST00000609587 FUT2Q10981 343 aa10.24□□□□□ -0.77
SMCHD1-213ENST00000609587 CD2BP2O95400 341 aaKnown RBP10.23□□□□□ -0.77
SMCHD1-213ENST00000609587 P3H3Q8IVL6 736 aa10.23□□□□□ -0.77
SMCHD1-213ENST00000609587 RSPH4AQ5TD94 716 aa10.21□□□□□ -0.77
SMCHD1-213ENST00000609587 SLC27A5Q9Y2P5 690 aa10.21□□□□□ -0.77
SMCHD1-213ENST00000609587 SNRPBP14678 240 aaKnown RBP10.2□□□□□ -0.78
SMCHD1-213ENST00000609587 SMPD1P17405 629 aa10.2□□□□□ -0.78
SMCHD1-213ENST00000609587 RDH13Q8NBN7 331 aa10.2□□□□□ -0.78
SMCHD1-213ENST00000609587 TTC24A2A3L6 582 aaPredicted RBP10.19□□□□□ -0.78
SMCHD1-213ENST00000609587 FMNL1O95466 1100 aaPredicted RBP10.19□□□□□ -0.78
SMCHD1-213ENST00000609587 ATP13A2Q9NQ11 1180 aa10.19□□□□□ -0.78
SMCHD1-213ENST00000609587 INSM1Q01101 510 aaPredicted RBP10.18□□□□□ -0.78
SMCHD1-213ENST00000609587 WNT7AO00755 349 aa10.17□□□□□ -0.78
SMCHD1-213ENST00000609587 ATP6V1AP38606 617 aa10.17□□□□□ -0.78
SMCHD1-213ENST00000609587 HIC1Q14526 733 aa10.17□□□□□ -0.78
SMCHD1-213ENST00000609587 NLRP7Q8WX94 980 aa10.17□□□□□ -0.78
SMCHD1-213ENST00000609587 SEMA3EO15041 775 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms