RNA–Protein interactions for RNA: ENST00000607272.2

MSH6-212, Transcript of mutS homolog 6, humanhuman

TSL 2

Gene MSH6, Length 2,219 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-212ENST00000607272 DUSP27Q5VZP5 1158 aa16.3■□□□□ 0.2
MSH6-212ENST00000607272 SKAP1Q86WV1 359 aa16.3■□□□□ 0.2
MSH6-212ENST00000607272 WDR43Q15061 677 aaKnown RBP eCLIP16.29■□□□□ 0.2
MSH6-212ENST00000607272 NFKBIBQ15653 356 aa16.29■□□□□ 0.2
MSH6-212ENST00000607272 TULP1O00294 542 aaPredicted RBP16.29■□□□□ 0.2
MSH6-212ENST00000607272 UNC13BO14795 1591 aa16.28■□□□□ 0.2
MSH6-212ENST00000607272 KNSTRNQ9Y448 316 aa16.28■□□□□ 0.2
MSH6-212ENST00000607272 GOLGA2Q08379 1002 aa16.27■□□□□ 0.2
MSH6-212ENST00000607272 SAMD9LQ8IVG5 1584 aa16.27■□□□□ 0.2
MSH6-212ENST00000607272 ATP10AO60312 1499 aa16.27■□□□□ 0.2
MSH6-212ENST00000607272 ZNF521Q96K83 1311 aa16.27■□□□□ 0.19
MSH6-212ENST00000607272 ANO8Q9HCE9 1232 aaPredicted RBP16.26■□□□□ 0.19
MSH6-212ENST00000607272 PLEKHH1Q9ULM0 1364 aa16.26■□□□□ 0.19
MSH6-212ENST00000607272 PPP2R1AP30153 589 aa16.26■□□□□ 0.19
MSH6-212ENST00000607272 C8orf34Q49A92 452 aa16.25■□□□□ 0.19
MSH6-212ENST00000607272 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.25■□□□□ 0.19
MSH6-212ENST00000607272 ATF5Q9Y2D1 282 aaPredicted RBP16.25■□□□□ 0.19
MSH6-212ENST00000607272 MAST1Q9Y2H9 1570 aa16.25■□□□□ 0.19
MSH6-212ENST00000607272 PREX2Q70Z35 1606 aa16.24■□□□□ 0.19
MSH6-212ENST00000607272 CDCA8Q53HL2 280 aa16.24■□□□□ 0.19
MSH6-212ENST00000607272 WDR7Q9Y4E6 1490 aa16.23■□□□□ 0.19
MSH6-212ENST00000607272 IQGAP3Q86VI3 1631 aa16.23■□□□□ 0.19
MSH6-212ENST00000607272 CDC42BPBQ9Y5S2 1711 aa16.23■□□□□ 0.19
MSH6-212ENST00000607272 SLC4A3P48751 1232 aa16.22■□□□□ 0.19
MSH6-212ENST00000607272 EIF3AQ14152 1382 aaKnown RBP16.22■□□□□ 0.19
MSH6-212ENST00000607272 MAGI2Q86UL8 1455 aa16.22■□□□□ 0.19
MSH6-212ENST00000607272 CLASP1Q7Z460 1538 aa16.22■□□□□ 0.19
MSH6-212ENST00000607272 SLFN5Q08AF3 891 aa16.22■□□□□ 0.19
MSH6-212ENST00000607272 MYO5CQ9NQX4 1742 aa16.21■□□□□ 0.19
MSH6-212ENST00000607272 PIK3C2GO75747 1445 aa16.2■□□□□ 0.18
MSH6-212ENST00000607272 TRMT2AQ8IZ69 625 aaKnown RBP16.2■□□□□ 0.18
MSH6-212ENST00000607272 RNF17Q9BXT8 1623 aaKnown RBP16.2■□□□□ 0.18
MSH6-212ENST00000607272 SYCP2Q9BX26 1530 aa16.2■□□□□ 0.18
MSH6-212ENST00000607272 NPC1L1Q9UHC9 1359 aa16.19■□□□□ 0.18
MSH6-212ENST00000607272 PLXNC1O60486 1568 aa16.19■□□□□ 0.18
MSH6-212ENST00000607272 FRAT1Q92837 279 aaPredicted RBP16.19■□□□□ 0.18
MSH6-212ENST00000607272 STAC3Q96MF2 364 aa16.19■□□□□ 0.18
MSH6-212ENST00000607272 NGEFQ8N5V2 710 aa16.17■□□□□ 0.18
MSH6-212ENST00000607272 BRPF3Q9ULD4 1205 aa16.17■□□□□ 0.18
MSH6-212ENST00000607272 DUOX2Q9NRD8 1548 aa16.17■□□□□ 0.18
MSH6-212ENST00000607272 RGS3P49796 1198 aa16.17■□□□□ 0.18
MSH6-212ENST00000607272 ARHGAP5Q13017 1502 aa16.16■□□□□ 0.18
MSH6-212ENST00000607272 ASXL1Q8IXJ9 1541 aa16.16■□□□□ 0.18
MSH6-212ENST00000607272 NKTRP30414 1462 aaKnown RBP16.16■□□□□ 0.18
MSH6-212ENST00000607272 ERCC6Q03468 1493 aa16.16■□□□□ 0.18
MSH6-212ENST00000607272 SYNMO15061 1565 aa16.16■□□□□ 0.18
MSH6-212ENST00000607272 E9PSI1 815 aa16.14■□□□□ 0.17
MSH6-212ENST00000607272 SCAF11Q99590 1463 aaKnown RBP16.13■□□□□ 0.17
MSH6-212ENST00000607272 ABCC2Q92887 1545 aa16.13■□□□□ 0.17
MSH6-212ENST00000607272 FRAT2O75474 233 aaPredicted RBP16.13■□□□□ 0.17
MSH6-212ENST00000607272 SCAPERQ9BY12 1400 aa16.12■□□□□ 0.17
MSH6-212ENST00000607272 IQGAP1P46940 1657 aa16.12■□□□□ 0.17
MSH6-212ENST00000607272 CGNL1Q0VF96 1302 aa16.12■□□□□ 0.17
MSH6-212ENST00000607272 PDE3AQ14432 1141 aa16.11■□□□□ 0.17
MSH6-212ENST00000607272 APAF1O14727 1248 aa16.11■□□□□ 0.17
MSH6-212ENST00000607272 NINLQ9Y2I6 1382 aa16.11■□□□□ 0.17
MSH6-212ENST00000607272 MADDQ8WXG6 1647 aa16.11■□□□□ 0.17
MSH6-212ENST00000607272 MAPK8IP3Q9UPT6 1336 aa16.1■□□□□ 0.17
MSH6-212ENST00000607272 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.1■□□□□ 0.17
MSH6-212ENST00000607272 BCAR3O75815 825 aa16.1■□□□□ 0.17
MSH6-212ENST00000607272 CCDC146Q8IYE0 955 aa16.1■□□□□ 0.17
MSH6-212ENST00000607272 TTC37Q6PGP7 1564 aa16.09■□□□□ 0.17
MSH6-212ENST00000607272 SPINK5Q9NQ38 1064 aaPredicted RBP16.09■□□□□ 0.17
MSH6-212ENST00000607272 BECN1Q14457 450 aa16.07■□□□□ 0.16
MSH6-212ENST00000607272 IGHDP01880 384 aa16.07■□□□□ 0.16
MSH6-212ENST00000607272 USP19O94966 1318 aa16.06■□□□□ 0.16
MSH6-212ENST00000607272 AAMPQ13685 434 aa16.06■□□□□ 0.16
MSH6-212ENST00000607272 CLUAP1Q96AJ1 413 aa16.06■□□□□ 0.16
MSH6-212ENST00000607272 CENPJQ9HC77 1338 aaPredicted RBP16.04■□□□□ 0.16
MSH6-212ENST00000607272 TRPM2O94759 1503 aa16.04■□□□□ 0.16
MSH6-212ENST00000607272 HOXD11P31277 338 aaPredicted RBP16.04■□□□□ 0.16
MSH6-212ENST00000607272 ARXQ96QS3 562 aa16.04■□□□□ 0.16
MSH6-212ENST00000607272 PTPRTO14522 1441 aa16.03■□□□□ 0.16
MSH6-212ENST00000607272 SPHKAPQ2M3C7 1700 aa16.03■□□□□ 0.16
MSH6-212ENST00000607272 MYOM1P52179 1685 aa16.03■□□□□ 0.16
MSH6-212ENST00000607272 VIRMAQ69YN4 1812 aaKnown RBP16.03■□□□□ 0.16
MSH6-212ENST00000607272 CANXP27824 592 aaKnown RBP16.02■□□□□ 0.16
MSH6-212ENST00000607272 EFCAB2Q5VUJ9 269 aa16.02■□□□□ 0.16
MSH6-212ENST00000607272 FAM43AQ8N2R8 423 aa16.02■□□□□ 0.16
MSH6-212ENST00000607272 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.02■□□□□ 0.16
MSH6-212ENST00000607272 IFNLR1Q8IU57 520 aaPredicted RBP16.02■□□□□ 0.15
MSH6-212ENST00000607272 ZMYM3Q14202 1370 aa16.02■□□□□ 0.15
MSH6-212ENST00000607272 KDM5AP29375 1690 aaKnown RBP16.01■□□□□ 0.15
MSH6-212ENST00000607272 PLCH2O75038 1416 aa16.01■□□□□ 0.15
MSH6-212ENST00000607272 WWC1Q8IX03 1113 aa16■□□□□ 0.15
MSH6-212ENST00000607272 PMFBP1Q8TBY8 1022 aa16■□□□□ 0.15
MSH6-212ENST00000607272 UPF2Q9HAU5 1272 aaKnown RBP16■□□□□ 0.15
MSH6-212ENST00000607272 DMRT2Q9Y5R5 561 aa16■□□□□ 0.15
MSH6-212ENST00000607272 POLR3AO14802 1390 aaPredicted RBP15.99■□□□□ 0.15
MSH6-212ENST00000607272 COG6Q9Y2V7 657 aa15.99■□□□□ 0.15
MSH6-212ENST00000607272 CEP152O94986 1710 aa15.99■□□□□ 0.15
MSH6-212ENST00000607272 KIAA1210Q9ULL0 1709 aa15.98■□□□□ 0.15
MSH6-212ENST00000607272 SEC24BO95487 1268 aa15.98■□□□□ 0.15
MSH6-212ENST00000607272 PANK1Q8TE04 598 aa15.98■□□□□ 0.15
MSH6-212ENST00000607272 FBXO3Q9UK99 471 aa15.98■□□□□ 0.15
MSH6-212ENST00000607272 CARD14Q9BXL6 1004 aa15.97■□□□□ 0.15
MSH6-212ENST00000607272 RTEL1-TNFRSF6BF6WH68 1400 aa15.97■□□□□ 0.15
MSH6-212ENST00000607272 RSPH6AQ9H0K4 717 aa15.96■□□□□ 0.15
MSH6-212ENST00000607272 VASPP50552 380 aaPredicted RBP15.96■□□□□ 0.15
MSH6-212ENST00000607272 L1TD1Q5T7N2 865 aaKnown RBP15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms