RNA–Protein interactions for RNA: ENST00000606752.1

USP6NL-204, Transcript of USP6 N-terminal like, humanhuman

TSL 1 (best)

Gene USP6NL, Length 1,823 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP6NL-204ENST00000606752 ST20-MTHFSA0A0A6YYL1 179 aa30.16■■■□□ 2.42
USP6NL-204ENST00000606752 IFT172Q9UG01 1749 aa30.14■■■□□ 2.42
USP6NL-204ENST00000606752 NRXN1Q9ULB1 1477 aa30.13■■■□□ 2.41
USP6NL-204ENST00000606752 SPATA31D1Q6ZQQ2 1576 aa30.12■■■□□ 2.41
USP6NL-204ENST00000606752 KIF7Q2M1P5 1343 aa30.11■■■□□ 2.41
USP6NL-204ENST00000606752 VGFO15240 615 aaPredicted RBP30.08■■■□□ 2.41
USP6NL-204ENST00000606752 KIAA1210Q9ULL0 1709 aa30.07■■■□□ 2.4
USP6NL-204ENST00000606752 PPLO60437 1756 aa30.07■■■□□ 2.4
USP6NL-204ENST00000606752 CFAP70Q5T0N1 1121 aa30.07■■■□□ 2.4
USP6NL-204ENST00000606752 TMEM131LA2VDJ0 1609 aa30.05■■■□□ 2.4
USP6NL-204ENST00000606752 PIK3C2GO75747 1445 aa30.03■■■□□ 2.4
USP6NL-204ENST00000606752 NEXMIFQ5QGS0 1516 aa30.03■■■□□ 2.4
USP6NL-204ENST00000606752 POLR1AO95602 1720 aaPredicted RBP30.03■■■□□ 2.4
USP6NL-204ENST00000606752 STAG3Q9UJ98 1225 aa30.03■■■□□ 2.4
USP6NL-204ENST00000606752 ZFYVE9O95405 1425 aa30.01■■■□□ 2.39
USP6NL-204ENST00000606752 SCAF11Q99590 1463 aaKnown RBP30.01■■■□□ 2.39
USP6NL-204ENST00000606752 C14orf93Q9H972 538 aaKnown RBP30.01■■■□□ 2.39
USP6NL-204ENST00000606752 TESK2Q96S53 571 aa29.98■■■□□ 2.39
USP6NL-204ENST00000606752 TNRQ92752 1358 aa29.97■■■□□ 2.39
USP6NL-204ENST00000606752 ANP32CO43423 234 aa29.96■■■□□ 2.39
USP6NL-204ENST00000606752 NUTM2DQ5VT03 806 aaPredicted RBP29.96■■■□□ 2.39
USP6NL-204ENST00000606752 IQGAP1P46940 1657 aa29.95■■■□□ 2.38
USP6NL-204ENST00000606752 A2ML1A8K2U0 1454 aa29.94■■■□□ 2.38
USP6NL-204ENST00000606752 MYO5BQ9ULV0 1848 aa29.93■■■□□ 2.38
USP6NL-204ENST00000606752 EIF3AQ14152 1382 aaKnown RBP29.93■■■□□ 2.38
USP6NL-204ENST00000606752 SETBP1Q9Y6X0 1596 aa29.92■■■□□ 2.38
USP6NL-204ENST00000606752 POLR3GLQ9BT43 218 aa29.92■■■□□ 2.38
USP6NL-204ENST00000606752 TMF1P82094 1093 aa29.89■■■□□ 2.38
USP6NL-204ENST00000606752 CEBPAP49715 358 aaPredicted RBP29.88■■■□□ 2.37
USP6NL-204ENST00000606752 ADGRB1O14514 1584 aa29.85■■■□□ 2.37
USP6NL-204ENST00000606752 FER1L4A9Z1Z3 1794 aa29.85■■■□□ 2.37
USP6NL-204ENST00000606752 SLC24A1O60721 1099 aa29.84■■■□□ 2.37
USP6NL-204ENST00000606752 RIMS2Q9UQ26 1411 aa29.84■■■□□ 2.37
USP6NL-204ENST00000606752 DISP3Q9P2K9 1392 aa29.83■■■□□ 2.37
USP6NL-204ENST00000606752 TMEM132EQ6IEE7 984 aa29.83■■■□□ 2.37
USP6NL-204ENST00000606752 ABCF1Q8NE71 845 aaKnown RBP eCLIP29.81■■■□□ 2.36
USP6NL-204ENST00000606752 NLRP1Q9C000 1473 aa29.81■■■□□ 2.36
USP6NL-204ENST00000606752 C3P01024 1663 aa29.8■■■□□ 2.36
USP6NL-204ENST00000606752 HDGFP51858 240 aaKnown RBP29.8■■■□□ 2.36
USP6NL-204ENST00000606752 CCER2I3L3R5 266 aa29.79■■■□□ 2.36
USP6NL-204ENST00000606752 TRAK1Q9UPV9 953 aa29.78■■■□□ 2.36
USP6NL-204ENST00000606752 CDCA8Q53HL2 280 aa29.78■■■□□ 2.36
USP6NL-204ENST00000606752 KDM5AP29375 1690 aaKnown RBP29.78■■■□□ 2.36
USP6NL-204ENST00000606752 CENPJQ9HC77 1338 aaPredicted RBP29.74■■■□□ 2.35
USP6NL-204ENST00000606752 TMEM2Q9UHN6 1383 aa29.73■■■□□ 2.35
USP6NL-204ENST00000606752 SBNO2Q9Y2G9 1366 aa29.73■■■□□ 2.35
USP6NL-204ENST00000606752 PLPPR3Q6T4P5 718 aa29.73■■■□□ 2.35
USP6NL-204ENST00000606752 SENP3Q9H4L4 574 aaPredicted RBP29.71■■■□□ 2.35
USP6NL-204ENST00000606752 MYO3AQ8NEV4 1616 aa29.71■■■□□ 2.35
USP6NL-204ENST00000606752 UBR1Q8IWV7 1749 aa29.71■■■□□ 2.35
USP6NL-204ENST00000606752 ALKQ9UM73 1620 aa29.7■■■□□ 2.34
USP6NL-204ENST00000606752 PRKRIP1Q9H875 184 aaPredicted RBP29.7■■■□□ 2.34
USP6NL-204ENST00000606752 YTHDC1Q96MU7 727 aaKnown RBP29.67■■■□□ 2.34
USP6NL-204ENST00000606752 ASXL1Q8IXJ9 1541 aa29.67■■■□□ 2.34
USP6NL-204ENST00000606752 ADAMTSL3P82987 1691 aa29.66■■■□□ 2.34
USP6NL-204ENST00000606752 STK26Q9P289 416 aa29.64■■■□□ 2.33
USP6NL-204ENST00000606752 YTHDC2Q9H6S0 1430 aaKnown RBP29.64■■■□□ 2.33
USP6NL-204ENST00000606752 RIMS1Q86UR5 1692 aaKnown RBP29.63■■■□□ 2.33
USP6NL-204ENST00000606752 THEMISQ8N1K5 641 aaPredicted RBP29.61■■■□□ 2.33
USP6NL-204ENST00000606752 PANK3Q9H999 370 aa29.6■■■□□ 2.33
USP6NL-204ENST00000606752 PTPRMP28827 1452 aa29.6■■■□□ 2.33
USP6NL-204ENST00000606752 PER1O15534 1290 aaPredicted RBP29.59■■■□□ 2.33
USP6NL-204ENST00000606752 TXNDC2Q86VQ3 553 aa29.58■■■□□ 2.33
USP6NL-204ENST00000606752 EID1Q9Y6B2 187 aa29.58■■■□□ 2.33
USP6NL-204ENST00000606752 ARHGEF28Q8N1W1 1705 aaKnown RBP29.58■■■□□ 2.33
USP6NL-204ENST00000606752 LTKP29376 864 aa29.57■■■□□ 2.32
USP6NL-204ENST00000606752 QRICH2Q9H0J4 1663 aa29.57■■■□□ 2.32
USP6NL-204ENST00000606752 CENPBP07199 599 aaPredicted RBP29.56■■■□□ 2.32
USP6NL-204ENST00000606752 SLIT1O75093 1534 aa29.56■■■□□ 2.32
USP6NL-204ENST00000606752 ARHGAP23Q9P227 1491 aa29.55■■■□□ 2.32
USP6NL-204ENST00000606752 LRPPRCP42704 1394 aaKnown RBP29.55■■■□□ 2.32
USP6NL-204ENST00000606752 BCANQ96GW7 911 aa29.55■■■□□ 2.32
USP6NL-204ENST00000606752 NRXN3Q9Y4C0 1643 aa29.55■■■□□ 2.32
USP6NL-204ENST00000606752 PLEKHG1Q9ULL1 1385 aa29.55■■■□□ 2.32
USP6NL-204ENST00000606752 SETD1AO15047 1707 aaKnown RBP29.53■■■□□ 2.32
USP6NL-204ENST00000606752 PUS7Q96PZ0 661 aaKnown RBP29.52■■■□□ 2.32
USP6NL-204ENST00000606752 PRAM1Q96QH2 718 aa29.52■■■□□ 2.32
USP6NL-204ENST00000606752 ABCC11Q96J66 1382 aa29.52■■■□□ 2.32
USP6NL-204ENST00000606752 EVC2Q86UK5 1308 aa29.52■■■□□ 2.32
USP6NL-204ENST00000606752 POGKQ9P215 609 aa29.52■■■□□ 2.32
USP6NL-204ENST00000606752 METP08581 1390 aa29.51■■■□□ 2.32
USP6NL-204ENST00000606752 KTN1Q86UP2 1357 aaKnown RBP29.51■■■□□ 2.31
USP6NL-204ENST00000606752 SAFB2Q14151 953 aaKnown RBP eCLIP29.49■■■□□ 2.31
USP6NL-204ENST00000606752 DLC1Q96QB1 1528 aa29.49■■■□□ 2.31
USP6NL-204ENST00000606752 CNGB1Q14028 1251 aaPredicted RBP29.48■■■□□ 2.31
USP6NL-204ENST00000606752 RALBP1Q15311 655 aa29.48■■■□□ 2.31
USP6NL-204ENST00000606752 CEP170BQ9Y4F5 1589 aaPredicted RBP29.48■■■□□ 2.31
USP6NL-204ENST00000606752 ADAMTS13Q76LX8 1427 aa29.47■■■□□ 2.31
USP6NL-204ENST00000606752 SETD1BQ9UPS6 1966 aaKnown RBP29.44■■■□□ 2.3
USP6NL-204ENST00000606752 KNSTRNQ9Y448 316 aa29.44■■■□□ 2.3
USP6NL-204ENST00000606752 MYOM1P52179 1685 aa29.44■■■□□ 2.3
USP6NL-204ENST00000606752 CCDC184Q52MB2 194 aa29.43■■■□□ 2.3
USP6NL-204ENST00000606752 SIRT1Q96EB6 747 aa29.43■■■□□ 2.3
USP6NL-204ENST00000606752 TULP4Q9NRJ4 1543 aa29.43■■■□□ 2.3
USP6NL-204ENST00000606752 MED14O60244 1454 aa29.42■■■□□ 2.3
USP6NL-204ENST00000606752 MRS2Q9HD23 443 aa29.41■■■□□ 2.3
USP6NL-204ENST00000606752 MINK1Q8N4C8 1332 aaPredicted RBP29.4■■■□□ 2.3
USP6NL-204ENST00000606752 WAPLQ7Z5K2 1190 aa29.4■■■□□ 2.3
USP6NL-204ENST00000606752 TBX22Q9Y458 520 aa29.4■■■□□ 2.3
USP6NL-204ENST00000606752 TECPR2O15040 1411 aa29.4■■■□□ 2.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms