RNA–Protein interactions for RNA: ENST00000604740.5

LAMA4-222, Transcript of laminin subunit alpha 4, human

TSL 2

Gene LAMA4, Length 694 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LAMA4-222	ENST00000604740	PRR14	Q9BWN1	585 aa		10.43	□□□□□ -0.74
LAMA4-222	ENST00000604740	PCDHB3	Q9Y5E6	796 aa		10.41	□□□□□ -0.74
LAMA4-222	ENST00000604740	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	10.4	□□□□□ -0.74
LAMA4-222	ENST00000604740	OAT	P04181	439 aa		10.4	□□□□□ -0.74
LAMA4-222	ENST00000604740	PPP1R18	Q6NYC8	613 aa		10.4	□□□□□ -0.74
LAMA4-222	ENST00000604740	PXYLP1	Q8TE99	480 aa		10.4	□□□□□ -0.74
LAMA4-222	ENST00000604740	GNPAT	O15228	680 aa		10.39	□□□□□ -0.75
LAMA4-222	ENST00000604740	NKX2-3	Q8TAU0	364 aa		10.39	□□□□□ -0.75
LAMA4-222	ENST00000604740	CFH	P08603	1231 aa		10.38	□□□□□ -0.75
LAMA4-222	ENST00000604740	FECH	P22830	423 aa		10.38	□□□□□ -0.75
LAMA4-222	ENST00000604740	KMT5B	Q4FZB7	885 aa		10.38	□□□□□ -0.75
LAMA4-222	ENST00000604740	GPR37	O15354	613 aa		10.37	□□□□□ -0.75
LAMA4-222	ENST00000604740	BLOC1S3	Q6QNY0	202 aa		10.37	□□□□□ -0.75
LAMA4-222	ENST00000604740	METTL3	Q86U44	580 aa	Known RBP	10.37	□□□□□ -0.75
LAMA4-222	ENST00000604740	ZPR1	O75312	459 aa		10.36	□□□□□ -0.75
LAMA4-222	ENST00000604740	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	10.36	□□□□□ -0.75
LAMA4-222	ENST00000604740	GPIHBP1	Q8IV16	184 aa		10.35	□□□□□ -0.75
LAMA4-222	ENST00000604740	VSIG10	Q8N0Z9	540 aa		10.35	□□□□□ -0.75
LAMA4-222	ENST00000604740	PRKD2	Q9BZL6	878 aa		10.35	□□□□□ -0.75
LAMA4-222	ENST00000604740	ACTN4	O43707	911 aa	Known RBP	10.34	□□□□□ -0.75
LAMA4-222	ENST00000604740	SLC10A3	P09131	477 aa		10.34	□□□□□ -0.75
LAMA4-222	ENST00000604740	GGCX	P38435	758 aa		10.34	□□□□□ -0.75
LAMA4-222	ENST00000604740	TLL1	O43897	1013 aa		10.31	□□□□□ -0.76
LAMA4-222	ENST00000604740	RSPH4A	Q5TD94	716 aa		10.3	□□□□□ -0.76
LAMA4-222	ENST00000604740		Q6ZNB5	142 aa		10.29	□□□□□ -0.76
LAMA4-222	ENST00000604740	NLRP7	Q8WX94	980 aa		10.29	□□□□□ -0.76
LAMA4-222	ENST00000604740	TULP1	O00294	542 aa	Predicted RBP	10.28	□□□□□ -0.76
LAMA4-222	ENST00000604740	RDH13	Q8NBN7	331 aa		10.28	□□□□□ -0.76
LAMA4-222	ENST00000604740		V9GY48	417 aa	Predicted RBP	10.28	□□□□□ -0.76
LAMA4-222	ENST00000604740	TMUB1	Q9BVT8	246 aa		10.27	□□□□□ -0.77
LAMA4-222	ENST00000604740	DAXX	Q9UER7	740 aa	Predicted RBP	10.27	□□□□□ -0.77
LAMA4-222	ENST00000604740	NR1I2	O75469	434 aa		10.26	□□□□□ -0.77
LAMA4-222	ENST00000604740	DDX11L8	A8MPP1	907 aa		10.25	□□□□□ -0.77
LAMA4-222	ENST00000604740	GFRA3	O60609	400 aa		10.25	□□□□□ -0.77
LAMA4-222	ENST00000604740	PUS10	Q3MIT2	529 aa	Known RBP	10.25	□□□□□ -0.77
LAMA4-222	ENST00000604740	RNF223	E7ERA6	249 aa		10.24	□□□□□ -0.77
LAMA4-222	ENST00000604740	LAPTM4A	Q15012	233 aa		10.24	□□□□□ -0.77
LAMA4-222	ENST00000604740	PHOX2B	Q99453	314 aa		10.24	□□□□□ -0.77
LAMA4-222	ENST00000604740	S1PR4	O95977	384 aa		10.23	□□□□□ -0.77
LAMA4-222	ENST00000604740	ADH1B	P00325	375 aa		10.23	□□□□□ -0.77
LAMA4-222	ENST00000604740	SULF1	Q8IWU6	871 aa		10.21	□□□□□ -0.77
LAMA4-222	ENST00000604740	PPEF1	O14829	653 aa	Predicted RBP	10.2	□□□□□ -0.78
LAMA4-222	ENST00000604740	MAP2K5	Q13163	448 aa		10.2	□□□□□ -0.78
LAMA4-222	ENST00000604740	SCUBE3	Q8IX30	993 aa		10.2	□□□□□ -0.78
LAMA4-222	ENST00000604740	FUT2	Q10981	343 aa		10.19	□□□□□ -0.78
LAMA4-222	ENST00000604740	SLC6A16	Q9GZN6	736 aa		10.19	□□□□□ -0.78
LAMA4-222	ENST00000604740	SLC19A1	P41440	591 aa		10.18	□□□□□ -0.78
LAMA4-222	ENST00000604740	ANKLE1	Q8NAG6	615 aa		10.18	□□□□□ -0.78
LAMA4-222	ENST00000604740	NRG2	O14511	850 aa	Predicted RBP	10.17	□□□□□ -0.78
LAMA4-222	ENST00000604740	SPSB2	Q99619	263 aa		10.17	□□□□□ -0.78
LAMA4-222	ENST00000604740	PDZRN3	Q9UPQ7	1066 aa		10.17	□□□□□ -0.78
LAMA4-222	ENST00000604740	ATP6V1A	P38606	617 aa		10.16	□□□□□ -0.78
LAMA4-222	ENST00000604740	GCGR	P47871	477 aa		10.16	□□□□□ -0.78
LAMA4-222	ENST00000604740	MORN1	Q5T089	497 aa		10.16	□□□□□ -0.78
LAMA4-222	ENST00000604740	EMID1	Q96A84	441 aa	Predicted RBP	10.15	□□□□□ -0.78
LAMA4-222	ENST00000604740	IRF6	O14896	467 aa		10.14	□□□□□ -0.79
LAMA4-222	ENST00000604740	MINK1	Q8N4C8	1332 aa	Predicted RBP	10.12	□□□□□ -0.79
LAMA4-222	ENST00000604740	SPRYD7	Q5W111	196 aa		10.12	□□□□□ -0.79
LAMA4-222	ENST00000604740	CCDC102A	Q96A19	550 aa		10.12	□□□□□ -0.79
LAMA4-222	ENST00000604740	SLC27A5	Q9Y2P5	690 aa		10.12	□□□□□ -0.79
LAMA4-222	ENST00000604740	FMNL1	O95466	1100 aa	Predicted RBP	10.11	□□□□□ -0.79
LAMA4-222	ENST00000604740	MDM2	Q00987	491 aa	Predicted RBP	10.11	□□□□□ -0.79
LAMA4-222	ENST00000604740	TRAF7	Q6Q0C0	670 aa		10.11	□□□□□ -0.79
LAMA4-222	ENST00000604740	LIAT1	Q6ZQX7	453 aa		10.11	□□□□□ -0.79
LAMA4-222	ENST00000604740	LCE2B	O14633	110 aa		10.1	□□□□□ -0.79
LAMA4-222	ENST00000604740	PLA2G2C	Q5R387	149 aa		10.1	□□□□□ -0.79
LAMA4-222	ENST00000604740	CD46	P15529	392 aa		10.09	□□□□□ -0.79
LAMA4-222	ENST00000604740	GRIPAP1	Q4V328	841 aa		10.09	□□□□□ -0.79
LAMA4-222	ENST00000604740	ZNF697	Q5TEC3	545 aa		10.09	□□□□□ -0.79
LAMA4-222	ENST00000604740	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	10.09	□□□□□ -0.79
LAMA4-222	ENST00000604740	ZNF598	Q86UK7	904 aa	Known RBP	10.09	□□□□□ -0.79
LAMA4-222	ENST00000604740	THAP11	Q96EK4	314 aa		10.09	□□□□□ -0.79
LAMA4-222	ENST00000604740	TRIM67	Q6ZTA4	783 aa		10.08	□□□□□ -0.8
LAMA4-222	ENST00000604740	LMOD2	Q6P5Q4	547 aa		10.07	□□□□□ -0.8
LAMA4-222	ENST00000604740	PRDM9	Q9NQV7	894 aa		10.07	□□□□□ -0.8
LAMA4-222	ENST00000604740	RNF19B	Q6ZMZ0	732 aa		10.06	□□□□□ -0.8
LAMA4-222	ENST00000604740	FCF1	Q9Y324	198 aa	Known RBP	10.06	□□□□□ -0.8
LAMA4-222	ENST00000604740	KDM4A	O75164	1064 aa		10.05	□□□□□ -0.8
LAMA4-222	ENST00000604740	BRICD5	Q6PL45	260 aa		10.05	□□□□□ -0.8
LAMA4-222	ENST00000604740	FAM160A2	Q8N612	972 aa	Predicted RBP	10.05	□□□□□ -0.8
LAMA4-222	ENST00000604740	SALL2	Q9Y467	1007 aa	Predicted RBP	10.05	□□□□□ -0.8
LAMA4-222	ENST00000604740	GPCPD1	Q9NPB8	672 aa		10.04	□□□□□ -0.8
LAMA4-222	ENST00000604740	TNFRSF10A	O00220	468 aa		10.03	□□□□□ -0.8
LAMA4-222	ENST00000604740	CLCN1	P35523	988 aa		10.03	□□□□□ -0.8
LAMA4-222	ENST00000604740	KRI1	Q8N9T8	703 aa	Known RBP	10.03	□□□□□ -0.8
LAMA4-222	ENST00000604740	PRR20E	P86478	221 aa		10.02	□□□□□ -0.81
LAMA4-222	ENST00000604740	PRR20C	P86479	221 aa		10.02	□□□□□ -0.81
LAMA4-222	ENST00000604740	PRR20D	P86480	221 aa		10.02	□□□□□ -0.81
LAMA4-222	ENST00000604740	PRR20B	P86481	221 aa		10.02	□□□□□ -0.81
LAMA4-222	ENST00000604740	PRR20A	P86496	221 aa		10.02	□□□□□ -0.81
LAMA4-222	ENST00000604740		Q3C1V9	767 aa		10.02	□□□□□ -0.81
LAMA4-222	ENST00000604740	MSS51	Q4VC12	460 aa		10.02	□□□□□ -0.81
LAMA4-222	ENST00000604740	USP46	P62068	366 aa		10	□□□□□ -0.81
LAMA4-222	ENST00000604740	PKDCC	Q504Y2	493 aa		10	□□□□□ -0.81
LAMA4-222	ENST00000604740	HLA-C	Q95604	372 aa		10	□□□□□ -0.81
LAMA4-222	ENST00000604740	FAM217B	Q9NTX9	383 aa	Predicted RBP	10	□□□□□ -0.81
LAMA4-222	ENST00000604740	GDF9	O60383	454 aa		9.99	□□□□□ -0.81
LAMA4-222	ENST00000604740	RPIA	P49247	311 aa		9.99	□□□□□ -0.81
LAMA4-222	ENST00000604740	FOXC1	Q12948	553 aa		9.99	□□□□□ -0.81
LAMA4-222	ENST00000604740	HOXA2	O43364	376 aa		9.98	□□□□□ -0.81

Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms