RNA–Protein interactions for RNA: ENST00000601324.1

VRK3-222, Transcript of vaccinia related kinase 3, humanhuman

TSL 4

Gene VRK3, Length 552 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-222ENST00000601324 NLRP7Q8WX94 980 aa8.89□□□□□ -0.99
VRK3-222ENST00000601324 DAXXQ9UER7 740 aaPredicted RBP8.89□□□□□ -0.99
VRK3-222ENST00000601324 TK2O00142 265 aa8.88□□□□□ -0.99
VRK3-222ENST00000601324 SMAPO00193 183 aa8.88□□□□□ -0.99
VRK3-222ENST00000601324 DNAJB2P25686 324 aa8.88□□□□□ -0.99
VRK3-222ENST00000601324 LSM11P83369 360 aaKnown RBP eCLIP8.88□□□□□ -0.99
VRK3-222ENST00000601324 ATAD2BQ9ULI0 1458 aa8.87□□□□□ -0.99
VRK3-222ENST00000601324 DDRGK1Q96HY6 314 aa8.86□□□□□ -0.99
VRK3-222ENST00000601324 FAM217BQ9NTX9 383 aaPredicted RBP8.86□□□□□ -0.99
VRK3-222ENST00000601324 MS4A1P11836 297 aa8.85□□□□□ -0.99
VRK3-222ENST00000601324 FAM117AQ9C073 453 aa8.85□□□□□ -0.99
VRK3-222ENST00000601324 NBPF3Q9H094 633 aa8.85□□□□□ -0.99
VRK3-222ENST00000601324 TMEM134Q9H6X4 195 aa8.85□□□□□ -0.99
VRK3-222ENST00000601324 SEPT9Q9UHD8 586 aaPredicted RBP8.85□□□□□ -0.99
VRK3-222ENST00000601324 SSTR3P32745 418 aaPredicted RBP8.84□□□□□ -0.99
VRK3-222ENST00000601324 FAM98CQ17RN3 349 aaKnown RBP8.84□□□□□ -0.99
VRK3-222ENST00000601324 ADGRD1Q6QNK2 874 aa8.84□□□□□ -0.99
VRK3-222ENST00000601324 LAPTM4BQ86VI4 370 aa8.84□□□□□ -0.99
VRK3-222ENST00000601324 IL27Q8NEV9 243 aa8.84□□□□□ -0.99
VRK3-222ENST00000601324 BHMG1C9JSJ3 638 aaPredicted RBP8.83□□□□□ -1
VRK3-222ENST00000601324 HMGXB3Q12766 1538 aa8.83□□□□□ -1
VRK3-222ENST00000601324 PLEKHG3A1L390 1219 aa8.82□□□□□ -1
VRK3-222ENST00000601324 HRO43593 1189 aa8.8□□□□□ -1
VRK3-222ENST00000601324 ANKRD13DQ6ZTN6 518 aa8.8□□□□□ -1
VRK3-222ENST00000601324 SULF1Q8IWU6 871 aa8.8□□□□□ -1
VRK3-222ENST00000601324 SWT1Q5T5J6 900 aaKnown RBP8.79□□□□□ -1
VRK3-222ENST00000601324 MRPL50Q8N5N7 158 aaKnown RBP8.79□□□□□ -1
VRK3-222ENST00000601324 BEGAINQ9BUH8 593 aa8.79□□□□□ -1
VRK3-222ENST00000601324 DDX11L8A8MPP1 907 aa8.78□□□□□ -1
VRK3-222ENST00000601324 HDGFP51858 240 aaKnown RBP8.78□□□□□ -1
VRK3-222ENST00000601324 POTEGQ6S5H5 508 aa8.78□□□□□ -1
VRK3-222ENST00000601324 KRTAP3-3Q9BYR6 98 aa8.78□□□□□ -1
VRK3-222ENST00000601324 KRTAP3-2Q9BYR7 98 aa8.78□□□□□ -1
VRK3-222ENST00000601324 POTEMA6NI47 508 aa8.77□□□□□ -1.01
VRK3-222ENST00000601324 CD46P15529 392 aa8.77□□□□□ -1.01
VRK3-222ENST00000601324 SLC4A3P48751 1232 aa8.76□□□□□ -1.01
VRK3-222ENST00000601324 SAMD7Q7Z3H4 446 aa8.76□□□□□ -1.01
VRK3-222ENST00000601324 ZFRQ96KR1 1074 aaKnown RBP8.76□□□□□ -1.01
VRK3-222ENST00000601324 SMARCA2P51531 1590 aa8.75□□□□□ -1.01
VRK3-222ENST00000601324 LAMC3Q9Y6N6 1575 aa8.75□□□□□ -1.01
VRK3-222ENST00000601324 RSPH4AQ5TD94 716 aa8.75□□□□□ -1.01
VRK3-222ENST00000601324 STAC3Q96MF2 364 aa8.75□□□□□ -1.01
VRK3-222ENST00000601324 GOPCQ9HD26 462 aa8.75□□□□□ -1.01
VRK3-222ENST00000601324 SLF2Q8IX21 1173 aa8.74□□□□□ -1.01
VRK3-222ENST00000601324 RDH13Q8NBN7 331 aa8.74□□□□□ -1.01
VRK3-222ENST00000601324 RSPH6AQ9H0K4 717 aa8.74□□□□□ -1.01
VRK3-222ENST00000601324 SH3D19Q5HYK7 790 aa8.73□□□□□ -1.01
VRK3-222ENST00000601324 CDAN1Q8IWY9 1227 aa8.73□□□□□ -1.01
VRK3-222ENST00000601324 KIF21AQ7Z4S6 1674 aa8.72□□□□□ -1.01
VRK3-222ENST00000601324 GOLGA8CPA6NN73 597 aa8.72□□□□□ -1.01
VRK3-222ENST00000601324 DIXDC1Q155Q3 683 aa8.72□□□□□ -1.01
VRK3-222ENST00000601324 SLC10A3P09131 477 aa8.71□□□□□ -1.02
VRK3-222ENST00000601324 ANKK1Q8NFD2 765 aa8.71□□□□□ -1.02
VRK3-222ENST00000601324 LRCH3Q96II8 777 aa8.71□□□□□ -1.02
VRK3-222ENST00000601324 TBC1D2Q9BYX2 928 aa8.71□□□□□ -1.02
VRK3-222ENST00000601324 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.71□□□□□ -1.02
VRK3-222ENST00000601324 GTF3C3Q9Y5Q9 886 aa8.71□□□□□ -1.02
VRK3-222ENST00000601324 SMARCA4P51532 1647 aa8.71□□□□□ -1.02
VRK3-222ENST00000601324 PDS5BQ9NTI5 1447 aa8.71□□□□□ -1.02
VRK3-222ENST00000601324 NECTIN2Q92692 538 aa8.7□□□□□ -1.02
VRK3-222ENST00000601324 WDR62O43379 1518 aa8.7□□□□□ -1.02
VRK3-222ENST00000601324 PEG3Q9GZU2 1588 aa8.69□□□□□ -1.02
VRK3-222ENST00000601324 RNF40O75150 1001 aa8.69□□□□□ -1.02
VRK3-222ENST00000601324 GCGRP47871 477 aa8.69□□□□□ -1.02
VRK3-222ENST00000601324 SKIV2LQ15477 1246 aaKnown RBP8.69□□□□□ -1.02
VRK3-222ENST00000601324 MYSM1Q5VVJ2 828 aa8.69□□□□□ -1.02
VRK3-222ENST00000601324 NUTM1Q86Y26 1132 aa8.69□□□□□ -1.02
VRK3-222ENST00000601324 SPIRE2Q8WWL2 714 aa8.69□□□□□ -1.02
VRK3-222ENST00000601324 BAZ1AQ9NRL2 1556 aaPredicted RBP8.69□□□□□ -1.02
VRK3-222ENST00000601324 SOWAHBA6NEL2 793 aa8.68□□□□□ -1.02
VRK3-222ENST00000601324 WNT2BQ93097 391 aa8.68□□□□□ -1.02
VRK3-222ENST00000601324 PCMTD1Q96MG8 357 aaPredicted RBP8.68□□□□□ -1.02
VRK3-222ENST00000601324 BAZ1BQ9UIG0 1483 aaKnown RBP8.68□□□□□ -1.02
VRK3-222ENST00000601324 KDM4AO75164 1064 aa8.67□□□□□ -1.02
VRK3-222ENST00000601324 CFHP08603 1231 aa8.67□□□□□ -1.02
VRK3-222ENST00000601324 MRC2Q9UBG0 1479 aa8.67□□□□□ -1.02
VRK3-222ENST00000601324 USP46P62068 366 aa8.66□□□□□ -1.02
VRK3-222ENST00000601324 CLK2P49760 499 aaKnown RBP8.65□□□□□ -1.02
VRK3-222ENST00000601324 BCAMP50895 628 aa8.65□□□□□ -1.02
VRK3-222ENST00000601324 POLR3EQ9NVU0 708 aa8.65□□□□□ -1.02
VRK3-222ENST00000601324 CADPSQ9ULU8 1353 aa8.64□□□□□ -1.03
VRK3-222ENST00000601324 KMT5BQ4FZB7 885 aa8.64□□□□□ -1.03
VRK3-222ENST00000601324 HPS5Q9UPZ3 1129 aa8.64□□□□□ -1.03
VRK3-222ENST00000601324 RIMBP3CA6NJZ7 1639 aa8.63□□□□□ -1.03
VRK3-222ENST00000601324 RIMBP3BA6NNM3 1639 aa8.63□□□□□ -1.03
VRK3-222ENST00000601324 RIMBP3Q9UFD9 1639 aa8.63□□□□□ -1.03
VRK3-222ENST00000601324 SPTLC1O15269 473 aa8.63□□□□□ -1.03
VRK3-222ENST00000601324 HOXA2O43364 376 aa8.63□□□□□ -1.03
VRK3-222ENST00000601324 GJA5P36382 358 aa8.63□□□□□ -1.03
VRK3-222ENST00000601324 RSBN1LQ6PCB5 846 aaPredicted RBP8.63□□□□□ -1.03
VRK3-222ENST00000601324 RIC3Q7Z5B4 369 aa8.63□□□□□ -1.03
VRK3-222ENST00000601324 PRR14Q9BWN1 585 aa8.63□□□□□ -1.03
VRK3-222ENST00000601324 LIMD1Q9UGP4 676 aa8.63□□□□□ -1.03
VRK3-222ENST00000601324 TSR3Q9UJK0 312 aaKnown RBP8.63□□□□□ -1.03
VRK3-222ENST00000601324 MOXD2PA6NHM9 499 aa8.62□□□□□ -1.03
VRK3-222ENST00000601324 PPP4CP60510 307 aa8.62□□□□□ -1.03
VRK3-222ENST00000601324 TUSC1Q2TAM9 212 aa8.62□□□□□ -1.03
VRK3-222ENST00000601324 THSD4Q6ZMP0 1018 aa8.62□□□□□ -1.03
VRK3-222ENST00000601324 PROCA1Q8NCQ7 364 aaPredicted RBP8.62□□□□□ -1.03
VRK3-222ENST00000601324 NDUFV2P19404 249 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms