RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 TMEM2Q9UHN6 1383 aa13.35□□□□□ -0.27
TRIM28-214ENST00000600840 TET3O43151 1660 aa13.35□□□□□ -0.27
TRIM28-214ENST00000600840 KCNA6P17658 529 aa13.35□□□□□ -0.27
TRIM28-214ENST00000600840 NOS1P29475 1434 aa13.35□□□□□ -0.27
TRIM28-214ENST00000600840 ANKRD50Q9ULJ7 1429 aa13.35□□□□□ -0.27
TRIM28-214ENST00000600840 NWD1Q149M9 1564 aa13.35□□□□□ -0.27
TRIM28-214ENST00000600840 EFCAB6Q5THR3 1501 aa13.34□□□□□ -0.27
TRIM28-214ENST00000600840 NKTRP30414 1462 aaKnown RBP13.32□□□□□ -0.28
TRIM28-214ENST00000600840 MYO5BQ9ULV0 1848 aa13.32□□□□□ -0.28
TRIM28-214ENST00000600840 MSH6P52701 1360 aa13.32□□□□□ -0.28
TRIM28-214ENST00000600840 KDM5AP29375 1690 aaKnown RBP13.31□□□□□ -0.28
TRIM28-214ENST00000600840 MEX3CQ5U5Q3 659 aaKnown RBP13.31□□□□□ -0.28
TRIM28-214ENST00000600840 SLAIN2Q9P270 581 aa13.31□□□□□ -0.28
TRIM28-214ENST00000600840 UNC13BO14795 1591 aa13.3□□□□□ -0.28
TRIM28-214ENST00000600840 ITGAEP38570 1179 aa13.3□□□□□ -0.28
TRIM28-214ENST00000600840 STAG3Q9UJ98 1225 aa13.3□□□□□ -0.28
TRIM28-214ENST00000600840 SHPRHQ149N8 1683 aa13.3□□□□□ -0.28
TRIM28-214ENST00000600840 ZNF772Q68DY9 489 aaPredicted RBP13.29□□□□□ -0.28
TRIM28-214ENST00000600840 E9PCH4 1651 aa13.28□□□□□ -0.28
TRIM28-214ENST00000600840 CHD2O14647 1828 aaKnown RBP13.28□□□□□ -0.28
TRIM28-214ENST00000600840 ADGRB3O60242 1522 aa13.28□□□□□ -0.28
TRIM28-214ENST00000600840 GCC2Q8IWJ2 1684 aa13.28□□□□□ -0.28
TRIM28-214ENST00000600840 SPATA31A6Q5VVP1 1343 aa13.27□□□□□ -0.29
TRIM28-214ENST00000600840 ROCK1Q13464 1354 aa13.27□□□□□ -0.29
TRIM28-214ENST00000600840 RXRBP28702 533 aa13.26□□□□□ -0.29
TRIM28-214ENST00000600840 RPRD2Q5VT52 1461 aaKnown RBP13.26□□□□□ -0.29
TRIM28-214ENST00000600840 TMEM131LA2VDJ0 1609 aa13.25□□□□□ -0.29
TRIM28-214ENST00000600840 AHDC1Q5TGY3 1603 aaPredicted RBP13.25□□□□□ -0.29
TRIM28-214ENST00000600840 BCANQ96GW7 911 aa13.25□□□□□ -0.29
TRIM28-214ENST00000600840 SLC52A1Q9NWF4 448 aa13.25□□□□□ -0.29
TRIM28-214ENST00000600840 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.25□□□□□ -0.29
TRIM28-214ENST00000600840 IQGAP3Q86VI3 1631 aa13.24□□□□□ -0.29
TRIM28-214ENST00000600840 DIP2AQ14689 1571 aa13.24□□□□□ -0.29
TRIM28-214ENST00000600840 ZFYVE9O95405 1425 aa13.24□□□□□ -0.29
TRIM28-214ENST00000600840 NUTM2BA6NNL0 878 aaPredicted RBP13.24□□□□□ -0.29
TRIM28-214ENST00000600840 NUTM2EB1AL46 878 aaPredicted RBP13.24□□□□□ -0.29
TRIM28-214ENST00000600840 NUTM2AQ8IVF1 878 aaPredicted RBP13.24□□□□□ -0.29
TRIM28-214ENST00000600840 CDK12Q9NYV4 1490 aaPredicted RBP13.23□□□□□ -0.29
TRIM28-214ENST00000600840 RGS12O14924 1447 aa13.23□□□□□ -0.29
TRIM28-214ENST00000600840 NUTM2DQ5VT03 806 aaPredicted RBP13.22□□□□□ -0.29
TRIM28-214ENST00000600840 NUP155O75694 1391 aa13.21□□□□□ -0.29
TRIM28-214ENST00000600840 AFF2P51816 1311 aa13.21□□□□□ -0.29
TRIM28-214ENST00000600840 TRIM26Q12899 539 aaPredicted RBP13.21□□□□□ -0.29
TRIM28-214ENST00000600840 RIMS2Q9UQ26 1411 aa13.21□□□□□ -0.3
TRIM28-214ENST00000600840 CHGAP10645 457 aaKnown RBP13.2□□□□□ -0.3
TRIM28-214ENST00000600840 C14orf37Q86TY3 774 aa13.2□□□□□ -0.3
TRIM28-214ENST00000600840 PLEKHG1Q9ULL1 1385 aa13.18□□□□□ -0.3
TRIM28-214ENST00000600840 SETBP1Q9Y6X0 1596 aa13.16□□□□□ -0.3
TRIM28-214ENST00000600840 ADAMTS13Q76LX8 1427 aa13.16□□□□□ -0.3
TRIM28-214ENST00000600840 BRINP3Q76B58 766 aa13.16□□□□□ -0.3
TRIM28-214ENST00000600840 NAIPQ13075 1403 aa13.15□□□□□ -0.3
TRIM28-214ENST00000600840 PPP1R15AO75807 674 aaPredicted RBP13.15□□□□□ -0.3
TRIM28-214ENST00000600840 SPHKAPQ2M3C7 1700 aa13.15□□□□□ -0.3
TRIM28-214ENST00000600840 HFM1A2PYH4 1435 aa13.14□□□□□ -0.31
TRIM28-214ENST00000600840 NCOA3Q9Y6Q9 1424 aa13.14□□□□□ -0.31
TRIM28-214ENST00000600840 ASXL1Q8IXJ9 1541 aa13.14□□□□□ -0.31
TRIM28-214ENST00000600840 NHSL1Q5SYE7 1610 aa13.14□□□□□ -0.31
TRIM28-214ENST00000600840 ATF3P18847 181 aa13.14□□□□□ -0.31
TRIM28-214ENST00000600840 CADPS2Q86UW7 1296 aa13.14□□□□□ -0.31
TRIM28-214ENST00000600840 C8orf37Q96NL8 207 aa13.14□□□□□ -0.31
TRIM28-214ENST00000600840 TBX22Q9Y458 520 aa13.14□□□□□ -0.31
TRIM28-214ENST00000600840 C19orf44Q9H6X5 657 aa13.13□□□□□ -0.31
TRIM28-214ENST00000600840 QTRT2Q9H974 415 aaKnown RBP13.13□□□□□ -0.31
TRIM28-214ENST00000600840 RBM6P78332 1123 aaKnown RBP13.12□□□□□ -0.31
TRIM28-214ENST00000600840 PTPRUQ92729 1446 aa13.12□□□□□ -0.31
TRIM28-214ENST00000600840 CLTCL1P53675 1640 aa13.11□□□□□ -0.31
TRIM28-214ENST00000600840 NRXN3Q9Y4C0 1643 aa13.11□□□□□ -0.31
TRIM28-214ENST00000600840 HDGFP51858 240 aaKnown RBP13.11□□□□□ -0.31
TRIM28-214ENST00000600840 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.11□□□□□ -0.312e-8■□□□□ 9.6
TRIM28-214ENST00000600840 DDX17Q92841 729 aaKnown RBP13.11□□□□□ -0.31
TRIM28-214ENST00000600840 SETD5Q9C0A6 1442 aa13.11□□□□□ -0.31
TRIM28-214ENST00000600840 PNPLA6Q8IY17 1366 aa13.09□□□□□ -0.31
TRIM28-214ENST00000600840 HRCP23327 699 aa13.09□□□□□ -0.31
TRIM28-214ENST00000600840 ATAD2Q6PL18 1390 aa13.08□□□□□ -0.31
TRIM28-214ENST00000600840 MST1RQ04912 1400 aa13.08□□□□□ -0.32
TRIM28-214ENST00000600840 ZRANB1Q9UGI0 708 aa13.08□□□□□ -0.32
TRIM28-214ENST00000600840 ADAMTS2O95450 1211 aa13.07□□□□□ -0.32
TRIM28-214ENST00000600840 AMOTL2Q9Y2J4 779 aa13.07□□□□□ -0.32
TRIM28-214ENST00000600840 XRN1Q8IZH2 1706 aaKnown RBP13.07□□□□□ -0.32
TRIM28-214ENST00000600840 TRPM2O94759 1503 aa13.07□□□□□ -0.32
TRIM28-214ENST00000600840 ZNF326Q5BKZ1 582 aaKnown RBP13.06□□□□□ -0.32
TRIM28-214ENST00000600840 NEXMIFQ5QGS0 1516 aa13.06□□□□□ -0.32
TRIM28-214ENST00000600840 METP08581 1390 aa13.06□□□□□ -0.32
TRIM28-214ENST00000600840 DCCP43146 1447 aa13.05□□□□□ -0.32
TRIM28-214ENST00000600840 LRRC59Q96AG4 307 aaKnown RBP13.05□□□□□ -0.32
TRIM28-214ENST00000600840 NGLY1Q96IV0 654 aa13.05□□□□□ -0.32
TRIM28-214ENST00000600840 PCGF6Q9BYE7 350 aa13.05□□□□□ -0.32
TRIM28-214ENST00000600840 PIK3R4Q99570 1358 aa13.05□□□□□ -0.32
TRIM28-214ENST00000600840 KIF1BO60333 1816 aa13.04□□□□□ -0.32
TRIM28-214ENST00000600840 FOXD1Q16676 465 aa13.04□□□□□ -0.32
TRIM28-214ENST00000600840 NALCNQ8IZF0 1738 aa13.04□□□□□ -0.32
TRIM28-214ENST00000600840 RAB3GAP2Q9H2M9 1393 aa13.04□□□□□ -0.32
TRIM28-214ENST00000600840 SLC4A1APQ9BWU0 796 aaKnown RBP13.01□□□□□ -0.33
TRIM28-214ENST00000600840 USP21Q9UK80 565 aa13.01□□□□□ -0.33
TRIM28-214ENST00000600840 SRCAPQ6ZRS2 3230 aa13□□□□□ -0.33
TRIM28-214ENST00000600840 ATRNO75882 1429 aa12.99□□□□□ -0.33
TRIM28-214ENST00000600840 TRPC5Q9UL62 973 aaPredicted RBP12.99□□□□□ -0.33
TRIM28-214ENST00000600840 LAMC1P11047 1609 aa12.98□□□□□ -0.33
TRIM28-214ENST00000600840 ADGRL3Q9HAR2 1447 aa12.97□□□□□ -0.33
TRIM28-214ENST00000600840 PPLO60437 1756 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms