RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 LRP6O75581 1613 aa13.55□□□□□ -0.24
SHKBP1-220ENST00000599716 APLP2Q06481 763 aa13.55□□□□□ -0.24
SHKBP1-220ENST00000599716 MEX3CQ5U5Q3 659 aaKnown RBP13.55□□□□□ -0.24
SHKBP1-220ENST00000599716 EFCAB6Q5THR3 1501 aa13.54□□□□□ -0.24
SHKBP1-220ENST00000599716 SETBP1Q9Y6X0 1596 aa13.54□□□□□ -0.24
SHKBP1-220ENST00000599716 TMEM94Q12767 1356 aa13.54□□□□□ -0.24
SHKBP1-220ENST00000599716 KANK1Q14678 1352 aa13.54□□□□□ -0.24
SHKBP1-220ENST00000599716 ANKRD30AQ9BXX3 1397 aa13.53□□□□□ -0.24
SHKBP1-220ENST00000599716 FAM50AQ14320 339 aaKnown RBP13.52□□□□□ -0.25
SHKBP1-220ENST00000599716 MYO5BQ9ULV0 1848 aa13.52□□□□□ -0.25
SHKBP1-220ENST00000599716 LMTK2Q8IWU2 1503 aa13.51□□□□□ -0.25
SHKBP1-220ENST00000599716 BCANQ96GW7 911 aa13.51□□□□□ -0.25
SHKBP1-220ENST00000599716 TET3O43151 1660 aa13.5□□□□□ -0.25
SHKBP1-220ENST00000599716 ADGRB3O60242 1522 aa13.5□□□□□ -0.25
SHKBP1-220ENST00000599716 NOS1P29475 1434 aa13.5□□□□□ -0.25
SHKBP1-220ENST00000599716 PROSER2Q86WR7 435 aaPredicted RBP13.5□□□□□ -0.25
SHKBP1-220ENST00000599716 RGS12O14924 1447 aa13.49□□□□□ -0.25
SHKBP1-220ENST00000599716 KCNA6P17658 529 aa13.48□□□□□ -0.25
SHKBP1-220ENST00000599716 NUTM2DQ5VT03 806 aaPredicted RBP13.48□□□□□ -0.25
SHKBP1-220ENST00000599716 ATAD2Q6PL18 1390 aa13.47□□□□□ -0.25
SHKBP1-220ENST00000599716 GCC2Q8IWJ2 1684 aa13.47□□□□□ -0.25
SHKBP1-220ENST00000599716 IFFO2Q5TF58 517 aa13.47□□□□□ -0.25
SHKBP1-220ENST00000599716 PHLPP1O60346 1717 aa13.47□□□□□ -0.25
SHKBP1-220ENST00000599716 KDM5AP29375 1690 aaKnown RBP13.47□□□□□ -0.25
SHKBP1-220ENST00000599716 COL16A1Q07092 1604 aaPredicted RBP13.46□□□□□ -0.26
SHKBP1-220ENST00000599716 ADGRL2O95490 1459 aa13.45□□□□□ -0.26
SHKBP1-220ENST00000599716 CHGAP10645 457 aaKnown RBP13.45□□□□□ -0.26
SHKBP1-220ENST00000599716 ANKRD50Q9ULJ7 1429 aa13.45□□□□□ -0.26
SHKBP1-220ENST00000599716 NWD1Q149M9 1564 aa13.45□□□□□ -0.26
SHKBP1-220ENST00000599716 NUTM2BA6NNL0 878 aaPredicted RBP13.44□□□□□ -0.26
SHKBP1-220ENST00000599716 NUTM2EB1AL46 878 aaPredicted RBP13.44□□□□□ -0.26
SHKBP1-220ENST00000599716 NUTM2AQ8IVF1 878 aaPredicted RBP13.44□□□□□ -0.26
SHKBP1-220ENST00000599716 ZFYVE9O95405 1425 aa13.44□□□□□ -0.26
SHKBP1-220ENST00000599716 PPP1R15AO75807 674 aaPredicted RBP13.43□□□□□ -0.26
SHKBP1-220ENST00000599716 SLAIN2Q9P270 581 aa13.43□□□□□ -0.26
SHKBP1-220ENST00000599716 RIMS2Q9UQ26 1411 aa13.43□□□□□ -0.26
SHKBP1-220ENST00000599716 TMEM131LA2VDJ0 1609 aa13.42□□□□□ -0.26
SHKBP1-220ENST00000599716 RBM6P78332 1123 aaKnown RBP13.42□□□□□ -0.26
SHKBP1-220ENST00000599716 PPARGC1BQ86YN6 1023 aaKnown RBP13.42□□□□□ -0.26
SHKBP1-220ENST00000599716 NKTRP30414 1462 aaKnown RBP13.42□□□□□ -0.26
SHKBP1-220ENST00000599716 AFF2P51816 1311 aa13.41□□□□□ -0.26
SHKBP1-220ENST00000599716 CHD2O14647 1828 aaKnown RBP13.41□□□□□ -0.26
SHKBP1-220ENST00000599716 SLC52A1Q9NWF4 448 aa13.41□□□□□ -0.26
SHKBP1-220ENST00000599716 MSH6P52701 1360 aa13.41□□□□□ -0.26
SHKBP1-220ENST00000599716 E9PCH4 1651 aa13.4□□□□□ -0.26
SHKBP1-220ENST00000599716 ITGAEP38570 1179 aa13.4□□□□□ -0.26
SHKBP1-220ENST00000599716 PLEKHG1Q9ULL1 1385 aa13.4□□□□□ -0.26
SHKBP1-220ENST00000599716 LRP5O75197 1615 aa13.39□□□□□ -0.27
SHKBP1-220ENST00000599716 ADRA2BP18089 450 aa13.39□□□□□ -0.27
SHKBP1-220ENST00000599716 UNC13BO14795 1591 aa13.39□□□□□ -0.27
SHKBP1-220ENST00000599716 RPRD2Q5VT52 1461 aaKnown RBP13.38□□□□□ -0.27
SHKBP1-220ENST00000599716 SHPRHQ149N8 1683 aa13.37□□□□□ -0.27
SHKBP1-220ENST00000599716 C14orf37Q86TY3 774 aa13.37□□□□□ -0.27
SHKBP1-220ENST00000599716 CCDC125Q86Z20 511 aa13.37□□□□□ -0.27
SHKBP1-220ENST00000599716 ADAMTS13Q76LX8 1427 aa13.37□□□□□ -0.27
SHKBP1-220ENST00000599716 NGLY1Q96IV0 654 aa13.35□□□□□ -0.27
SHKBP1-220ENST00000599716 QTRT2Q9H974 415 aaKnown RBP13.35□□□□□ -0.27
SHKBP1-220ENST00000599716 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.34□□□□□ -0.27
SHKBP1-220ENST00000599716 PTPRUQ92729 1446 aa13.34□□□□□ -0.27
SHKBP1-220ENST00000599716 AHDC1Q5TGY3 1603 aaPredicted RBP13.34□□□□□ -0.27
SHKBP1-220ENST00000599716 IQGAP3Q86VI3 1631 aa13.34□□□□□ -0.27
SHKBP1-220ENST00000599716 TBX22Q9Y458 520 aa13.33□□□□□ -0.28
SHKBP1-220ENST00000599716 NUP155O75694 1391 aa13.32□□□□□ -0.28
SHKBP1-220ENST00000599716 CEP350Q5VT06 3117 aa13.32□□□□□ -0.28
SHKBP1-220ENST00000599716 AMOTL2Q9Y2J4 779 aa13.31□□□□□ -0.28
SHKBP1-220ENST00000599716 HDGFP51858 240 aaKnown RBP13.3□□□□□ -0.28
SHKBP1-220ENST00000599716 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.3□□□□□ -0.28
SHKBP1-220ENST00000599716 NRXN3Q9Y4C0 1643 aa13.29□□□□□ -0.28
SHKBP1-220ENST00000599716 ATF3P18847 181 aa13.29□□□□□ -0.28
SHKBP1-220ENST00000599716 YY1P25490 414 aa13.29□□□□□ -0.28
SHKBP1-220ENST00000599716 DDX17Q92841 729 aaKnown RBP13.29□□□□□ -0.28
SHKBP1-220ENST00000599716 NHSL1Q5SYE7 1610 aa13.28□□□□□ -0.28
SHKBP1-220ENST00000599716 BRINP3Q76B58 766 aa13.28□□□□□ -0.28
SHKBP1-220ENST00000599716 C19orf44Q9H6X5 657 aa13.28□□□□□ -0.28
SHKBP1-220ENST00000599716 ROCK1Q13464 1354 aa13.28□□□□□ -0.28
SHKBP1-220ENST00000599716 TRPM2O94759 1503 aa13.28□□□□□ -0.28
SHKBP1-220ENST00000599716 DIP2AQ14689 1571 aa13.28□□□□□ -0.28
SHKBP1-220ENST00000599716 ZNF326Q5BKZ1 582 aaKnown RBP13.27□□□□□ -0.29
SHKBP1-220ENST00000599716 CADPS2Q86UW7 1296 aa13.27□□□□□ -0.29
SHKBP1-220ENST00000599716 C8orf37Q96NL8 207 aa13.27□□□□□ -0.29
SHKBP1-220ENST00000599716 METP08581 1390 aa13.26□□□□□ -0.29
SHKBP1-220ENST00000599716 SPHKAPQ2M3C7 1700 aa13.26□□□□□ -0.29
SHKBP1-220ENST00000599716 UTRNP46939 3433 aa13.26□□□□□ -0.29
SHKBP1-220ENST00000599716 XRN1Q8IZH2 1706 aaKnown RBP13.25□□□□□ -0.29
SHKBP1-220ENST00000599716 NCOA3Q9Y6Q9 1424 aa13.24□□□□□ -0.29
SHKBP1-220ENST00000599716 PIK3R4Q99570 1358 aa13.24□□□□□ -0.29
SHKBP1-220ENST00000599716 CLTCL1P53675 1640 aa13.24□□□□□ -0.29
SHKBP1-220ENST00000599716 ASXL1Q8IXJ9 1541 aa13.23□□□□□ -0.29
SHKBP1-220ENST00000599716 BLMP54132 1417 aaPredicted RBP13.22□□□□□ -0.29
SHKBP1-220ENST00000599716 MST1RQ04912 1400 aa13.22□□□□□ -0.29
SHKBP1-220ENST00000599716 SETD5Q9C0A6 1442 aa13.22□□□□□ -0.29
SHKBP1-220ENST00000599716 NALCNQ8IZF0 1738 aa13.22□□□□□ -0.29
SHKBP1-220ENST00000599716 NEXMIFQ5QGS0 1516 aa13.2□□□□□ -0.3
SHKBP1-220ENST00000599716 TRPC5Q9UL62 973 aaPredicted RBP13.2□□□□□ -0.3
SHKBP1-220ENST00000599716 HRCP23327 699 aa13.19□□□□□ -0.3
SHKBP1-220ENST00000599716 BCL9LQ86UU0 1499 aa13.18□□□□□ -0.3
SHKBP1-220ENST00000599716 DCCP43146 1447 aa13.17□□□□□ -0.3
SHKBP1-220ENST00000599716 ADGRL3Q9HAR2 1447 aa13.17□□□□□ -0.3
SHKBP1-220ENST00000599716 LRRC59Q96AG4 307 aaKnown RBP13.17□□□□□ -0.3
SHKBP1-220ENST00000599716 ADAMTS2O95450 1211 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 96.6 ms