RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 ZFYVE9O95405 1425 aa21.52■■□□□ 1.04
TRIM28-209ENST00000597423 ADGRF5Q8IZF2 1346 aa21.51■■□□□ 1.03
TRIM28-209ENST00000597423 PTPRMP28827 1452 aa21.51■■□□□ 1.03
TRIM28-209ENST00000597423 ROCK2O75116 1388 aaKnown RBP21.5■■□□□ 1.03
TRIM28-209ENST00000597423 EID1Q9Y6B2 187 aa21.5■■□□□ 1.03
TRIM28-209ENST00000597423 RALGAPBQ86X10 1494 aa21.49■■□□□ 1.03
TRIM28-209ENST00000597423 RIMS2Q9UQ26 1411 aa21.47■■□□□ 1.03
TRIM28-209ENST00000597423 TMEM2Q9UHN6 1383 aa21.47■■□□□ 1.03
TRIM28-209ENST00000597423 NUTM2DQ5VT03 806 aaPredicted RBP21.46■■□□□ 1.03
TRIM28-209ENST00000597423 C14orf93Q9H972 538 aaKnown RBP21.46■■□□□ 1.03
TRIM28-209ENST00000597423 KDM5AP29375 1690 aaKnown RBP21.46■■□□□ 1.03
TRIM28-209ENST00000597423 NRXN1Q9ULB1 1477 aa21.45■■□□□ 1.02
TRIM28-209ENST00000597423 NEXMIFQ5QGS0 1516 aa21.45■■□□□ 1.02
TRIM28-209ENST00000597423 NBPF1Q3BBV0 1214 aa21.44■■□□□ 1.02
TRIM28-209ENST00000597423 CFAP70Q5T0N1 1121 aa21.44■■□□□ 1.02
TRIM28-209ENST00000597423 KDM4FA0A1W2PPD8 638 aa21.43■■□□□ 1.02
TRIM28-209ENST00000597423 TXNDC2Q86VQ3 553 aa21.43■■□□□ 1.02
TRIM28-209ENST00000597423 SETD1BQ9UPS6 1966 aaKnown RBP21.43■■□□□ 1.02
TRIM28-209ENST00000597423 HSPA5P11021 654 aaKnown RBP21.42■■□□□ 1.02
TRIM28-209ENST00000597423 GPRASP1Q5JY77 1395 aa21.42■■□□□ 1.02
TRIM28-209ENST00000597423 PPLO60437 1756 aa21.41■■□□□ 1.02
TRIM28-209ENST00000597423 PIK3C2GO75747 1445 aa21.41■■□□□ 1.02
TRIM28-209ENST00000597423 BCANQ96GW7 911 aa21.41■■□□□ 1.02
TRIM28-209ENST00000597423 IFT172Q9UG01 1749 aa21.4■■□□□ 1.02
TRIM28-209ENST00000597423 USP47Q96K76 1375 aa21.38■■□□□ 1.01
TRIM28-209ENST00000597423 SLC24A1O60721 1099 aa21.38■■□□□ 1.01
TRIM28-209ENST00000597423 ANKLE2Q86XL3 938 aa21.38■■□□□ 1.01
TRIM28-209ENST00000597423 UBR1Q8IWV7 1749 aa21.38■■□□□ 1.01
TRIM28-209ENST00000597423 TRPM1Q7Z4N2 1603 aa21.37■■□□□ 1.01
TRIM28-209ENST00000597423 MYO3AQ8NEV4 1616 aa21.37■■□□□ 1.01
TRIM28-209ENST00000597423 CEP170BQ9Y4F5 1589 aaPredicted RBP21.36■■□□□ 1.01
TRIM28-209ENST00000597423 KIAA1210Q9ULL0 1709 aa21.36■■□□□ 1.01
TRIM28-209ENST00000597423 MYO5BQ9ULV0 1848 aa21.35■■□□□ 1.01
TRIM28-209ENST00000597423 EIF3AQ14152 1382 aaKnown RBP21.35■■□□□ 1.01
TRIM28-209ENST00000597423 SLIT1O75093 1534 aa21.34■■□□□ 1.01
TRIM28-209ENST00000597423 LTKP29376 864 aa21.34■■□□□ 1.01
TRIM28-209ENST00000597423 ARHGAP23Q9P227 1491 aa21.33■■□□□ 1.01
TRIM28-209ENST00000597423 HIRIP3Q9BW71 556 aaPredicted RBP21.33■■□□□ 1.01
TRIM28-209ENST00000597423 PLEKHG1Q9ULL1 1385 aa21.33■■□□□ 1
TRIM28-209ENST00000597423 SCAF11Q99590 1463 aaKnown RBP21.32■■□□□ 1
TRIM28-209ENST00000597423 ST20-MTHFSA0A0A6YYL1 179 aa21.32■■□□□ 1
TRIM28-209ENST00000597423 LAMC1P11047 1609 aa21.32■■□□□ 1
TRIM28-209ENST00000597423 SETBP1Q9Y6X0 1596 aa21.31■■□□□ 1
TRIM28-209ENST00000597423 TMEM132EQ6IEE7 984 aa21.3■■□□□ 1
TRIM28-209ENST00000597423 SENP3Q9H4L4 574 aaPredicted RBP21.28■■□□□ 1
TRIM28-209ENST00000597423 TBX22Q9Y458 520 aa21.28■■□□□ 1
TRIM28-209ENST00000597423 ZNF142P52746 1687 aaPredicted RBP21.27■■□□□ 1
TRIM28-209ENST00000597423 TRAK1Q9UPV9 953 aa21.26■□□□□ 0.99
TRIM28-209ENST00000597423 ALKQ9UM73 1620 aa21.26■□□□□ 0.99
TRIM28-209ENST00000597423 TMF1P82094 1093 aa21.24■□□□□ 0.99
TRIM28-209ENST00000597423 STK26Q9P289 416 aa21.24■□□□□ 0.99
TRIM28-209ENST00000597423 CDCA8Q53HL2 280 aa21.23■□□□□ 0.99
TRIM28-209ENST00000597423 CENPJQ9HC77 1338 aaPredicted RBP21.22■□□□□ 0.99
TRIM28-209ENST00000597423 ADGRB1O14514 1584 aa21.22■□□□□ 0.99
TRIM28-209ENST00000597423 LRPPRCP42704 1394 aaKnown RBP21.22■□□□□ 0.99
TRIM28-209ENST00000597423 SIRT1Q96EB6 747 aa21.21■□□□□ 0.99
TRIM28-209ENST00000597423 SLC26A8Q96RN1 970 aa21.21■□□□□ 0.99
TRIM28-209ENST00000597423 POGKQ9P215 609 aa21.21■□□□□ 0.99
TRIM28-209ENST00000597423 YTHDC2Q9H6S0 1430 aaKnown RBP21.21■□□□□ 0.99
TRIM28-209ENST00000597423 ABCC11Q96J66 1382 aa21.2■□□□□ 0.98
TRIM28-209ENST00000597423 ADAMTS13Q76LX8 1427 aa21.19■□□□□ 0.98
TRIM28-209ENST00000597423 DIEXFQ68CQ4 756 aaKnown RBP21.18■□□□□ 0.98
TRIM28-209ENST00000597423 TESK2Q96S53 571 aa21.18■□□□□ 0.98
TRIM28-209ENST00000597423 METP08581 1390 aa21.17■□□□□ 0.98
TRIM28-209ENST00000597423 IQGAP1P46940 1657 aa21.16■□□□□ 0.98
TRIM28-209ENST00000597423 PIK3R4Q99570 1358 aa21.16■□□□□ 0.98
TRIM28-209ENST00000597423 NCKAP5LQ9HCH0 1330 aa21.16■□□□□ 0.98
TRIM28-209ENST00000597423 MED14O60244 1454 aa21.15■□□□□ 0.98
TRIM28-209ENST00000597423 NPHP4O75161 1426 aaPredicted RBP21.15■□□□□ 0.98
TRIM28-209ENST00000597423 CCDC7Q96M83 1385 aa21.15■□□□□ 0.98
TRIM28-209ENST00000597423 WASHC2AQ641Q2 1341 aa21.15■□□□□ 0.98
TRIM28-209ENST00000597423 DIP2AQ14689 1571 aa21.14■□□□□ 0.98
TRIM28-209ENST00000597423 SBNO2Q9Y2G9 1366 aa21.14■□□□□ 0.98
TRIM28-209ENST00000597423 KIF7Q2M1P5 1343 aa21.14■□□□□ 0.97
TRIM28-209ENST00000597423 C11orf95C9JLR9 678 aaPredicted RBP21.14■□□□□ 0.97
TRIM28-209ENST00000597423 DDX10Q13206 875 aaKnown RBP21.14■□□□□ 0.97
TRIM28-209ENST00000597423 PRAM1Q96QH2 718 aa21.14■□□□□ 0.97
TRIM28-209ENST00000597423 POLR3GLQ9BT43 218 aa21.13■□□□□ 0.97
TRIM28-209ENST00000597423 NRXN3Q9Y4C0 1643 aa21.12■□□□□ 0.97
TRIM28-209ENST00000597423 AMOTL2Q9Y2J4 779 aa21.12■□□□□ 0.97
TRIM28-209ENST00000597423 HSPA2P54652 639 aa21.11■□□□□ 0.97
TRIM28-209ENST00000597423 EVC2Q86UK5 1308 aa21.1■□□□□ 0.97
TRIM28-209ENST00000597423 ASXL1Q8IXJ9 1541 aa21.1■□□□□ 0.97
TRIM28-209ENST00000597423 DLC1Q96QB1 1528 aa21.1■□□□□ 0.97
TRIM28-209ENST00000597423 PUS7Q96PZ0 661 aaKnown RBP21.1■□□□□ 0.97
TRIM28-209ENST00000597423 FAM135BQ49AJ0 1406 aa21.09■□□□□ 0.97
TRIM28-209ENST00000597423 TECPR2O15040 1411 aa21.08■□□□□ 0.97
TRIM28-209ENST00000597423 LMTK3Q96Q04 1460 aa21.07■□□□□ 0.96
TRIM28-209ENST00000597423 SAFB2Q14151 953 aaKnown RBP eCLIP21.07■□□□□ 0.96
TRIM28-209ENST00000597423 WAPLQ7Z5K2 1190 aa21.06■□□□□ 0.96
TRIM28-209ENST00000597423 DMRT2Q9Y5R5 561 aa21.06■□□□□ 0.96
TRIM28-209ENST00000597423 SETD1AO15047 1707 aaKnown RBP21.05■□□□□ 0.96
TRIM28-209ENST00000597423 KCNA6P17658 529 aa21.05■□□□□ 0.96
TRIM28-209ENST00000597423 DISP3Q9P2K9 1392 aa21.04■□□□□ 0.96
TRIM28-209ENST00000597423 MINK1Q8N4C8 1332 aaPredicted RBP21.03■□□□□ 0.96
TRIM28-209ENST00000597423 PTPRUQ92729 1446 aa21.02■□□□□ 0.96
TRIM28-209ENST00000597423 POLR1AO95602 1720 aaPredicted RBP21.01■□□□□ 0.95
TRIM28-209ENST00000597423 ROBO2Q9HCK4 1378 aa21■□□□□ 0.95
TRIM28-209ENST00000597423 SRPK2P78362 688 aaKnown RBP21■□□□□ 0.95
TRIM28-209ENST00000597423 PTCH1Q13635 1447 aa21■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms