RNA–Protein interactions for RNA: ENST00000594948.5

VRK3-209, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 2 BASIC

Gene VRK3, Length 1,847 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-209ENST00000594948 SCAF11Q99590 1463 aaKnown RBP17.41■□□□□ 0.38
VRK3-209ENST00000594948 PLCH2O75038 1416 aa17.41■□□□□ 0.38
VRK3-209ENST00000594948 TET3O43151 1660 aa17.41■□□□□ 0.38
VRK3-209ENST00000594948 VIRMAQ69YN4 1812 aaKnown RBP17.41■□□□□ 0.38
VRK3-209ENST00000594948 ZNF521Q96K83 1311 aa17.4■□□□□ 0.38
VRK3-209ENST00000594948 NPM2Q86SE8 214 aaKnown RBP17.4■□□□□ 0.38
VRK3-209ENST00000594948 ARAP3Q8WWN8 1544 aa17.39■□□□□ 0.38
VRK3-209ENST00000594948 CENPQQ7L2Z9 268 aaPredicted RBP17.39■□□□□ 0.37
VRK3-209ENST00000594948 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.39■□□□□ 0.37
VRK3-209ENST00000594948 PTPRTO14522 1441 aa17.38■□□□□ 0.37
VRK3-209ENST00000594948 PPP2R1AP30153 589 aa17.38■□□□□ 0.37
VRK3-209ENST00000594948 EIF3AQ14152 1382 aaKnown RBP17.38■□□□□ 0.37
VRK3-209ENST00000594948 CLTCL1P53675 1640 aa17.38■□□□□ 0.37
VRK3-209ENST00000594948 ZCCHC11Q5TAX3 1644 aaKnown RBP17.38■□□□□ 0.37
VRK3-209ENST00000594948 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.37■□□□□ 0.37
VRK3-209ENST00000594948 ADAMTS8Q9UP79 889 aa17.37■□□□□ 0.37
VRK3-209ENST00000594948 RTEL1-TNFRSF6BF6WH68 1400 aa17.37■□□□□ 0.37
VRK3-209ENST00000594948 PLIN1O60240 522 aa17.37■□□□□ 0.37
VRK3-209ENST00000594948 PLEKHH1Q9ULM0 1364 aa17.36■□□□□ 0.37
VRK3-209ENST00000594948 WDR43Q15061 677 aaKnown RBP eCLIP17.36■□□□□ 0.37
VRK3-209ENST00000594948 AMER1Q5JTC6 1135 aaPredicted RBP17.36■□□□□ 0.37
VRK3-209ENST00000594948 DUSP27Q5VZP5 1158 aa17.36■□□□□ 0.37
VRK3-209ENST00000594948 KNSTRNQ9Y448 316 aa17.36■□□□□ 0.37
VRK3-209ENST00000594948 UHRF1BP1LA0JNW5 1464 aa17.35■□□□□ 0.37
VRK3-209ENST00000594948 SLC24A1O60721 1099 aa17.34■□□□□ 0.37
VRK3-209ENST00000594948 VWDEQ8N2E2 1590 aa17.34■□□□□ 0.37
VRK3-209ENST00000594948 ZFYVE16Q7Z3T8 1539 aa17.34■□□□□ 0.37
VRK3-209ENST00000594948 NEFMP07197 916 aa17.33■□□□□ 0.37
VRK3-209ENST00000594948 GOLGA2Q08379 1002 aa17.33■□□□□ 0.37
VRK3-209ENST00000594948 TRMT2AQ8IZ69 625 aaKnown RBP17.33■□□□□ 0.36
VRK3-209ENST00000594948 NGEFQ8N5V2 710 aa17.33■□□□□ 0.36
VRK3-209ENST00000594948 IFT172Q9UG01 1749 aa17.32■□□□□ 0.36
VRK3-209ENST00000594948 MYO3AQ8NEV4 1616 aa17.32■□□□□ 0.36
VRK3-209ENST00000594948 EFCAB2Q5VUJ9 269 aa17.31■□□□□ 0.36
VRK3-209ENST00000594948 SLFN5Q08AF3 891 aa17.31■□□□□ 0.36
VRK3-209ENST00000594948 MYOM2P54296 1465 aa17.3■□□□□ 0.36
VRK3-209ENST00000594948 MAP3K4Q9Y6R4 1608 aa17.3■□□□□ 0.36
VRK3-209ENST00000594948 KIF1BO60333 1816 aa17.3■□□□□ 0.36
VRK3-209ENST00000594948 FAM161AQ3B820 660 aa17.29■□□□□ 0.36
VRK3-209ENST00000594948 C20orf194Q5TEA3 1177 aa17.29■□□□□ 0.36
VRK3-209ENST00000594948 NKTRP30414 1462 aaKnown RBP17.29■□□□□ 0.36
VRK3-209ENST00000594948 INO80Q9ULG1 1556 aaPredicted RBP17.29■□□□□ 0.36
VRK3-209ENST00000594948 TRAPPC8Q9Y2L5 1435 aa17.28■□□□□ 0.36
VRK3-209ENST00000594948 ERCC6L2Q5T890 1561 aa17.28■□□□□ 0.36
VRK3-209ENST00000594948 LAS1LQ9Y4W2 734 aaKnown RBP17.28■□□□□ 0.36
VRK3-209ENST00000594948 NINLQ9Y2I6 1382 aa17.27■□□□□ 0.36
VRK3-209ENST00000594948 ABCA6Q8N139 1617 aa17.27■□□□□ 0.35
VRK3-209ENST00000594948 ERVK-7P63135 1459 aa17.24■□□□□ 0.35
VRK3-209ENST00000594948 C8orf34Q49A92 452 aa17.24■□□□□ 0.35
VRK3-209ENST00000594948 ABCA9Q8IUA7 1624 aa17.23■□□□□ 0.35
VRK3-209ENST00000594948 SPAG9O60271 1321 aaKnown RBP17.23■□□□□ 0.35
VRK3-209ENST00000594948 KANK1Q14678 1352 aa17.23■□□□□ 0.35
VRK3-209ENST00000594948 ATP7AQ04656 1500 aa17.23■□□□□ 0.35
VRK3-209ENST00000594948 E9PSI1 815 aa17.22■□□□□ 0.35
VRK3-209ENST00000594948 SBNO2Q9Y2G9 1366 aa17.22■□□□□ 0.35
VRK3-209ENST00000594948 ZC3H13Q5T200 1668 aaKnown RBP17.21■□□□□ 0.35
VRK3-209ENST00000594948 MROH1Q8NDA8 1641 aa17.21■□□□□ 0.35
VRK3-209ENST00000594948 SETBP1Q9Y6X0 1596 aa17.21■□□□□ 0.35
VRK3-209ENST00000594948 SHPRHQ149N8 1683 aa17.2■□□□□ 0.34
VRK3-209ENST00000594948 USP32Q8NFA0 1604 aa17.2■□□□□ 0.34
VRK3-209ENST00000594948 DAXXQ9UER7 740 aaPredicted RBP17.2■□□□□ 0.34
VRK3-209ENST00000594948 NRXN1Q9ULB1 1477 aa17.2■□□□□ 0.34
VRK3-209ENST00000594948 SKAP1Q86WV1 359 aa17.19■□□□□ 0.34
VRK3-209ENST00000594948 POLR3AO14802 1390 aaPredicted RBP17.19■□□□□ 0.34
VRK3-209ENST00000594948 PDE3AQ14432 1141 aa17.19■□□□□ 0.34
VRK3-209ENST00000594948 CGNL1Q0VF96 1302 aa17.18■□□□□ 0.34
VRK3-209ENST00000594948 NFKBIBQ15653 356 aa17.18■□□□□ 0.34
VRK3-209ENST00000594948 EFCAB6Q5THR3 1501 aa17.17■□□□□ 0.34
VRK3-209ENST00000594948 MROH2AA6NES4 1674 aa17.17■□□□□ 0.34
VRK3-209ENST00000594948 AAMPQ13685 434 aa17.17■□□□□ 0.34
VRK3-209ENST00000594948 GSE1Q14687 1217 aa17.17■□□□□ 0.34
VRK3-209ENST00000594948 LMTK2Q8IWU2 1503 aa17.16■□□□□ 0.34
VRK3-209ENST00000594948 ZMYM3Q14202 1370 aa17.15■□□□□ 0.34
VRK3-209ENST00000594948 APAF1O14727 1248 aa17.14■□□□□ 0.34
VRK3-209ENST00000594948 MAPK8IP3Q9UPT6 1336 aa17.14■□□□□ 0.33
VRK3-209ENST00000594948 PPLO60437 1756 aa17.13■□□□□ 0.33
VRK3-209ENST00000594948 QRICH2Q9H0J4 1663 aa17.12■□□□□ 0.33
VRK3-209ENST00000594948 CCDC146Q8IYE0 955 aa17.12■□□□□ 0.33
VRK3-209ENST00000594948 IQSEC2Q5JU85 1478 aa17.12■□□□□ 0.33
VRK3-209ENST00000594948 ADGRB3O60242 1522 aa17.12■□□□□ 0.33
VRK3-209ENST00000594948 PPRC1Q5VV67 1664 aaKnown RBP17.12■□□□□ 0.33
VRK3-209ENST00000594948 SPINK5Q9NQ38 1064 aaPredicted RBP17.12■□□□□ 0.33
VRK3-209ENST00000594948 FANCAO15360 1455 aa17.11■□□□□ 0.33
VRK3-209ENST00000594948 NCBP3Q53F19 620 aaKnown RBP17.1■□□□□ 0.33
VRK3-209ENST00000594948 CENPJQ9HC77 1338 aaPredicted RBP17.1■□□□□ 0.33
VRK3-209ENST00000594948 BCAR3O75815 825 aa17.09■□□□□ 0.33
VRK3-209ENST00000594948 IL27Q8NEV9 243 aa17.09■□□□□ 0.33
VRK3-209ENST00000594948 CARD14Q9BXL6 1004 aa17.09■□□□□ 0.33
VRK3-209ENST00000594948 RGS3P49796 1198 aa17.08■□□□□ 0.33
VRK3-209ENST00000594948 AFAP1Q8N556 730 aa17.08■□□□□ 0.33
VRK3-209ENST00000594948 UGGT1Q9NYU2 1555 aa17.08■□□□□ 0.32
VRK3-209ENST00000594948 CLUAP1Q96AJ1 413 aa17.07■□□□□ 0.32
VRK3-209ENST00000594948 KIDINS220Q9ULH0 1771 aa17.07■□□□□ 0.32
VRK3-209ENST00000594948 CFAP70Q5T0N1 1121 aa17.07■□□□□ 0.32
VRK3-209ENST00000594948 WWC1Q8IX03 1113 aa17.06■□□□□ 0.32
VRK3-209ENST00000594948 USP19O94966 1318 aa17.06■□□□□ 0.32
VRK3-209ENST00000594948 ADGRF5Q8IZF2 1346 aa17.06■□□□□ 0.32
VRK3-209ENST00000594948 IGHDP01880 384 aa17.05■□□□□ 0.32
VRK3-209ENST00000594948 SLC4A3P48751 1232 aa17.05■□□□□ 0.32
VRK3-209ENST00000594948 PHF23Q9BUL5 403 aaPredicted RBP17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms