RNA–Protein interactions for RNA: ENST00000594104.1

VRK3-208, Transcript of vaccinia related kinase 3, humanhuman

Gene VRK3, Length 2,197 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-208ENST00000594104 COL17A1Q9UMD9 1497 aaPredicted RBP15.77■□□□□ 0.11
VRK3-208ENST00000594104 INSRP06213 1382 aa15.76■□□□□ 0.11
VRK3-208ENST00000594104 LRPPRCP42704 1394 aaKnown RBP15.76■□□□□ 0.11
VRK3-208ENST00000594104 NBPF1Q3BBV0 1214 aa15.76■□□□□ 0.11
VRK3-208ENST00000594104 TET3O43151 1660 aa15.76■□□□□ 0.11
VRK3-208ENST00000594104 TESK2Q96S53 571 aa15.75■□□□□ 0.11
VRK3-208ENST00000594104 SCAPERQ9BY12 1400 aa15.75■□□□□ 0.11
VRK3-208ENST00000594104 TMF1P82094 1093 aa15.75■□□□□ 0.11
VRK3-208ENST00000594104 ASXL2Q76L83 1435 aa15.75■□□□□ 0.11
VRK3-208ENST00000594104 PPP4R2Q9NY27 417 aa15.75■□□□□ 0.11
VRK3-208ENST00000594104 PARD3Q8TEW0 1356 aa15.74■□□□□ 0.11
VRK3-208ENST00000594104 RNF17Q9BXT8 1623 aaKnown RBP15.73■□□□□ 0.11
VRK3-208ENST00000594104 ADGRL1O94910 1474 aa15.73■□□□□ 0.11
VRK3-208ENST00000594104 NLRP13Q86W25 1043 aa15.73■□□□□ 0.11
VRK3-208ENST00000594104 CDCA8Q53HL2 280 aa15.72■□□□□ 0.11
VRK3-208ENST00000594104 PER1O15534 1290 aaPredicted RBP15.72■□□□□ 0.11
VRK3-208ENST00000594104 SPDYE4A6NLX3 237 aa15.71■□□□□ 0.11
VRK3-208ENST00000594104 ZMYM4Q5VZL5 1548 aa15.71■□□□□ 0.11
VRK3-208ENST00000594104 OSCARQ8IYS5 282 aa15.7■□□□□ 0.1
VRK3-208ENST00000594104 NUDCQ9Y266 331 aa15.7■□□□□ 0.1
VRK3-208ENST00000594104 SPHKAPQ2M3C7 1700 aa15.7■□□□□ 0.1
VRK3-208ENST00000594104 RNF123Q5XPI4 1314 aa15.69■□□□□ 0.1
VRK3-208ENST00000594104 HOXD11P31277 338 aaPredicted RBP15.69■□□□□ 0.1
VRK3-208ENST00000594104 CEP152O94986 1710 aa15.69■□□□□ 0.1
VRK3-208ENST00000594104 MADDQ8WXG6 1647 aa15.69■□□□□ 0.1
VRK3-208ENST00000594104 LMTK2Q8IWU2 1503 aa15.69■□□□□ 0.1
VRK3-208ENST00000594104 ECM2O94769 699 aaPredicted RBP15.69■□□□□ 0.1
VRK3-208ENST00000594104 DNAJC5Q9H3Z4 198 aa15.69■□□□□ 0.1
VRK3-208ENST00000594104 CFAP74Q9C0B2 1584 aa15.68■□□□□ 0.1
VRK3-208ENST00000594104 ZNF518AQ6AHZ1 1483 aa15.68■□□□□ 0.1
VRK3-208ENST00000594104 KIF3BO15066 747 aa15.67■□□□□ 0.1
VRK3-208ENST00000594104 SCAF11Q99590 1463 aaKnown RBP15.67■□□□□ 0.1
VRK3-208ENST00000594104 DISP3Q9P2K9 1392 aa15.67■□□□□ 0.1
VRK3-208ENST00000594104 KIAA1210Q9ULL0 1709 aa15.66■□□□□ 0.1
VRK3-208ENST00000594104 PDE3BQ13370 1112 aa15.66■□□□□ 0.1
VRK3-208ENST00000594104 EIF3AQ14152 1382 aaKnown RBP15.65■□□□□ 0.1
VRK3-208ENST00000594104 CLTCL1P53675 1640 aa15.65■□□□□ 0.1
VRK3-208ENST00000594104 MYOM2P54296 1465 aa15.65■□□□□ 0.1
VRK3-208ENST00000594104 IQGAP1P46940 1657 aa15.64■□□□□ 0.09
VRK3-208ENST00000594104 MROH1Q8NDA8 1641 aa15.64■□□□□ 0.09
VRK3-208ENST00000594104 MLH3Q9UHC1 1453 aa15.64■□□□□ 0.09
VRK3-208ENST00000594104 PANK3Q9H999 370 aa15.63■□□□□ 0.09
VRK3-208ENST00000594104 PROM2Q8N271 834 aa15.63■□□□□ 0.09
VRK3-208ENST00000594104 KLHL34Q8N239 644 aa15.62■□□□□ 0.09
VRK3-208ENST00000594104 EFCAB6Q5THR3 1501 aa15.62■□□□□ 0.09
VRK3-208ENST00000594104 CD109Q6YHK3 1445 aa15.62■□□□□ 0.09
VRK3-208ENST00000594104 MYT1LQ9UL68 1186 aa15.62■□□□□ 0.09
VRK3-208ENST00000594104 NPC1L1Q9UHC9 1359 aa15.61■□□□□ 0.09
VRK3-208ENST00000594104 KIDINS220Q9ULH0 1771 aa15.61■□□□□ 0.09
VRK3-208ENST00000594104 POGZQ7Z3K3 1410 aa15.6■□□□□ 0.09
VRK3-208ENST00000594104 NEO1Q92859 1461 aa15.58■□□□□ 0.08
VRK3-208ENST00000594104 IRX6P78412 446 aaPredicted RBP15.58■□□□□ 0.08
VRK3-208ENST00000594104 RBM19Q9Y4C8 960 aaKnown RBP15.58■□□□□ 0.08
VRK3-208ENST00000594104 NRXN1Q9ULB1 1477 aa15.58■□□□□ 0.08
VRK3-208ENST00000594104 SYNMO15061 1565 aa15.57■□□□□ 0.08
VRK3-208ENST00000594104 CNGB1Q14028 1251 aaPredicted RBP15.57■□□□□ 0.08
VRK3-208ENST00000594104 KNSTRNQ9Y448 316 aa15.57■□□□□ 0.08
VRK3-208ENST00000594104 MAP3K4Q9Y6R4 1608 aa15.56■□□□□ 0.08
VRK3-208ENST00000594104 RPGRIP1LQ68CZ1 1315 aa15.56■□□□□ 0.08
VRK3-208ENST00000594104 RGL2O15211 777 aa15.56■□□□□ 0.08
VRK3-208ENST00000594104 NPM2Q86SE8 214 aaKnown RBP15.55■□□□□ 0.08
VRK3-208ENST00000594104 BLMP54132 1417 aaPredicted RBP15.55■□□□□ 0.08
VRK3-208ENST00000594104 SBNO2Q9Y2G9 1366 aa15.55■□□□□ 0.08
VRK3-208ENST00000594104 KIF1BO60333 1816 aa15.54■□□□□ 0.08
VRK3-208ENST00000594104 HECW2Q9P2P5 1572 aa15.53■□□□□ 0.08
VRK3-208ENST00000594104 PPRC1Q5VV67 1664 aaKnown RBP15.53■□□□□ 0.08
VRK3-208ENST00000594104 CC2D1BQ5T0F9 858 aaKnown RBP15.52■□□□□ 0.08
VRK3-208ENST00000594104 SETBP1Q9Y6X0 1596 aa15.52■□□□□ 0.07
VRK3-208ENST00000594104 ADGRB3O60242 1522 aa15.52■□□□□ 0.07
VRK3-208ENST00000594104 ASXL1Q8IXJ9 1541 aa15.52■□□□□ 0.07
VRK3-208ENST00000594104 IFT172Q9UG01 1749 aa15.51■□□□□ 0.07
VRK3-208ENST00000594104 PIK3C2GO75747 1445 aa15.5■□□□□ 0.07
VRK3-208ENST00000594104 FRMPD1Q5SYB0 1578 aa15.49■□□□□ 0.07
VRK3-208ENST00000594104 ADGRF5Q8IZF2 1346 aa15.49■□□□□ 0.07
VRK3-208ENST00000594104 FANCIQ9NVI1 1328 aa15.49■□□□□ 0.07
VRK3-208ENST00000594104 ABCA6Q8N139 1617 aa15.49■□□□□ 0.07
VRK3-208ENST00000594104 NPATQ14207 1427 aa15.48■□□□□ 0.07
VRK3-208ENST00000594104 PPP2R1AP30153 589 aa15.48■□□□□ 0.07
VRK3-208ENST00000594104 CFAP70Q5T0N1 1121 aa15.48■□□□□ 0.07
VRK3-208ENST00000594104 MYO3AQ8NEV4 1616 aa15.48■□□□□ 0.07
VRK3-208ENST00000594104 PUS7Q96PZ0 661 aaKnown RBP15.48■□□□□ 0.07
VRK3-208ENST00000594104 RCAN3Q9UKA8 241 aa15.48■□□□□ 0.07
VRK3-208ENST00000594104 ARHGAP31Q2M1Z3 1444 aa15.47■□□□□ 0.07
VRK3-208ENST00000594104 KDM5AP29375 1690 aaKnown RBP15.47■□□□□ 0.07
VRK3-208ENST00000594104 C14orf93Q9H972 538 aaKnown RBP15.47■□□□□ 0.07
VRK3-208ENST00000594104 ABCC3O15438 1527 aa15.47■□□□□ 0.07
VRK3-208ENST00000594104 B4GALNT3Q6L9W6 998 aa15.46■□□□□ 0.07
VRK3-208ENST00000594104 NGEFQ8N5V2 710 aa15.46■□□□□ 0.07
VRK3-208ENST00000594104 NOS1P29475 1434 aa15.46■□□□□ 0.07
VRK3-208ENST00000594104 RRP1P56182 461 aaKnown RBP15.45■□□□□ 0.06
VRK3-208ENST00000594104 UGGT1Q9NYU2 1555 aa15.45■□□□□ 0.06
VRK3-208ENST00000594104 ERVK-7P63135 1459 aa15.45■□□□□ 0.06
VRK3-208ENST00000594104 CCDC136Q96JN2 1154 aa15.44■□□□□ 0.06
VRK3-208ENST00000594104 WDR43Q15061 677 aaKnown RBP eCLIP15.43■□□□□ 0.06
VRK3-208ENST00000594104 CHGAP10645 457 aaKnown RBP15.43■□□□□ 0.06
VRK3-208ENST00000594104 CENPJQ9HC77 1338 aaPredicted RBP15.43■□□□□ 0.06
VRK3-208ENST00000594104 GLI2P10070 1586 aa15.43■□□□□ 0.06
VRK3-208ENST00000594104 MYOM1P52179 1685 aa15.43■□□□□ 0.06
VRK3-208ENST00000594104 GGT6Q6P531 493 aa15.42■□□□□ 0.06
VRK3-208ENST00000594104 MROH2AA6NES4 1674 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms