RNA–Protein interactions for RNA: ENST00000589857.1

ZNF540-208, Transcript of zinc finger protein 540, humanhuman

TSL 4

Gene ZNF540, Length 575 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-208ENST00000589857 NBPF8Q3BBV2 869 aa14.64□□□□□ -0.07
ZNF540-208ENST00000589857 UNC13BO14795 1591 aa14.64□□□□□ -0.07
ZNF540-208ENST00000589857 POLR1AO95602 1720 aaPredicted RBP14.63□□□□□ -0.07
ZNF540-208ENST00000589857 CCDC144AA2RUR9 1427 aa14.61□□□□□ -0.07
ZNF540-208ENST00000589857 NEFLP07196 543 aa14.61□□□□□ -0.07
ZNF540-208ENST00000589857 EID1Q9Y6B2 187 aa14.61□□□□□ -0.07
ZNF540-208ENST00000589857 DEPDC5O75140 1603 aa14.61□□□□□ -0.07
ZNF540-208ENST00000589857 USP47Q96K76 1375 aa14.6□□□□□ -0.07
ZNF540-208ENST00000589857 NEURL4Q96JN8 1562 aa14.6□□□□□ -0.07
ZNF540-208ENST00000589857 VWDEQ8N2E2 1590 aa14.58□□□□□ -0.08
ZNF540-208ENST00000589857 KIF7Q2M1P5 1343 aa14.57□□□□□ -0.08
ZNF540-208ENST00000589857 IQGAP3Q86VI3 1631 aa14.56□□□□□ -0.08
ZNF540-208ENST00000589857 TXNDC2Q86VQ3 553 aa14.56□□□□□ -0.08
ZNF540-208ENST00000589857 STAG3Q9UJ98 1225 aa14.56□□□□□ -0.08
ZNF540-208ENST00000589857 SUPT16HQ9Y5B9 1047 aaKnown RBP14.56□□□□□ -0.08
ZNF540-208ENST00000589857 STAC3Q96MF2 364 aa14.55□□□□□ -0.08
ZNF540-208ENST00000589857 CARD11Q9BXL7 1154 aa14.55□□□□□ -0.08
ZNF540-208ENST00000589857 LRRC7Q96NW7 1537 aa14.55□□□□□ -0.08
ZNF540-208ENST00000589857 IQGAP1P46940 1657 aa14.55□□□□□ -0.08
ZNF540-208ENST00000589857 ZNF326Q5BKZ1 582 aaKnown RBP14.54□□□□□ -0.08
ZNF540-208ENST00000589857 PRKRIP1Q9H875 184 aaPredicted RBP14.54□□□□□ -0.08
ZNF540-208ENST00000589857 SYNMO15061 1565 aa14.54□□□□□ -0.08
ZNF540-208ENST00000589857 RNF17Q9BXT8 1623 aaKnown RBP14.53□□□□□ -0.08
ZNF540-208ENST00000589857 KTN1Q86UP2 1357 aaKnown RBP14.53□□□□□ -0.08
ZNF540-208ENST00000589857 SCAF11Q99590 1463 aaKnown RBP14.52□□□□□ -0.08
ZNF540-208ENST00000589857 EIF2AK4Q9P2K8 1649 aaKnown RBP14.52□□□□□ -0.09
ZNF540-208ENST00000589857 KANK1Q14678 1352 aa14.51□□□□□ -0.09
ZNF540-208ENST00000589857 ZC3H13Q5T200 1668 aaKnown RBP14.51□□□□□ -0.09
ZNF540-208ENST00000589857 ERVK-7P63135 1459 aa14.5□□□□□ -0.09
ZNF540-208ENST00000589857 DCAF11Q8TEB1 546 aa14.5□□□□□ -0.09
ZNF540-208ENST00000589857 ABCC3O15438 1527 aa14.5□□□□□ -0.09
ZNF540-208ENST00000589857 FAM135BQ49AJ0 1406 aa14.49□□□□□ -0.09
ZNF540-208ENST00000589857 PRAG1Q86YV5 1406 aa14.49□□□□□ -0.09
ZNF540-208ENST00000589857 GPRASP1Q5JY77 1395 aa14.48□□□□□ -0.09
ZNF540-208ENST00000589857 HNRNPUQ00839 825 aaKnown RBP eCLIP14.48□□□□□ -0.09
ZNF540-208ENST00000589857 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.48□□□□□ -0.09
ZNF540-208ENST00000589857 LAMC1P11047 1609 aa14.48□□□□□ -0.09
ZNF540-208ENST00000589857 C11orf95C9JLR9 678 aaPredicted RBP14.47□□□□□ -0.09
ZNF540-208ENST00000589857 MRS2Q9HD23 443 aa14.47□□□□□ -0.09
ZNF540-208ENST00000589857 ARHGAP31Q2M1Z3 1444 aa14.47□□□□□ -0.09
ZNF540-208ENST00000589857 KCNA6P17658 529 aa14.46□□□□□ -0.09
ZNF540-208ENST00000589857 LTKP29376 864 aa14.46□□□□□ -0.09
ZNF540-208ENST00000589857 HDGFP51858 240 aaKnown RBP14.46□□□□□ -0.09
ZNF540-208ENST00000589857 ERICH6BQ5W0A0 696 aa14.45□□□□□ -0.1
ZNF540-208ENST00000589857 KDM2AQ9Y2K7 1162 aa14.45□□□□□ -0.1
ZNF540-208ENST00000589857 ALKQ9UM73 1620 aa14.44□□□□□ -0.1
ZNF540-208ENST00000589857 PROSER2Q86WR7 435 aaPredicted RBP14.44□□□□□ -0.1
ZNF540-208ENST00000589857 BCANQ96GW7 911 aa14.44□□□□□ -0.1
ZNF540-208ENST00000589857 SLIT1O75093 1534 aa14.44□□□□□ -0.1
ZNF540-208ENST00000589857 TMEM2Q9UHN6 1383 aa14.44□□□□□ -0.1
ZNF540-208ENST00000589857 ARHGAP23Q9P227 1491 aa14.44□□□□□ -0.1
ZNF540-208ENST00000589857 RGS17Q9UGC6 210 aaPredicted RBP14.43□□□□□ -0.1
ZNF540-208ENST00000589857 ZBED9Q6R2W3 1325 aa14.42□□□□□ -0.1
ZNF540-208ENST00000589857 RALBP1Q15311 655 aa14.42□□□□□ -0.1
ZNF540-208ENST00000589857 TRPM2O94759 1503 aa14.41□□□□□ -0.1
ZNF540-208ENST00000589857 SLC24A1O60721 1099 aa14.41□□□□□ -0.1
ZNF540-208ENST00000589857 MSH6P52701 1360 aa14.41□□□□□ -0.1
ZNF540-208ENST00000589857 TMEM94Q12767 1356 aa14.41□□□□□ -0.1
ZNF540-208ENST00000589857 TRPM1Q7Z4N2 1603 aa14.41□□□□□ -0.1
ZNF540-208ENST00000589857 FKBP8Q14318 412 aa14.4□□□□□ -0.1
ZNF540-208ENST00000589857 SLC52A1Q9NWF4 448 aa14.4□□□□□ -0.1
ZNF540-208ENST00000589857 UBR1Q8IWV7 1749 aa14.4□□□□□ -0.1
ZNF540-208ENST00000589857 ST20-MTHFSA0A0A6YYL1 179 aa14.39□□□□□ -0.11
ZNF540-208ENST00000589857 POLR3GLQ9BT43 218 aa14.39□□□□□ -0.11
ZNF540-208ENST00000589857 PRDM15P57071 1507 aaPredicted RBP14.38□□□□□ -0.11
ZNF540-208ENST00000589857 TET3O43151 1660 aa14.38□□□□□ -0.11
ZNF540-208ENST00000589857 BRD4O60885 1362 aaPredicted RBP14.37□□□□□ -0.11
ZNF540-208ENST00000589857 IDI1Q13907 227 aa14.37□□□□□ -0.11
ZNF540-208ENST00000589857 RGL3Q3MIN7 710 aa14.37□□□□□ -0.11
ZNF540-208ENST00000589857 CDCA8Q53HL2 280 aa14.37□□□□□ -0.11
ZNF540-208ENST00000589857 POTEAQ6S8J7 498 aa14.37□□□□□ -0.11
ZNF540-208ENST00000589857 SLC26A8Q96RN1 970 aa14.37□□□□□ -0.11
ZNF540-208ENST00000589857 SLAIN2Q9P270 581 aa14.37□□□□□ -0.11
ZNF540-208ENST00000589857 STRCP1A6NGW2 1772 aa14.37□□□□□ -0.11
ZNF540-208ENST00000589857 JCADQ9P266 1359 aa14.36□□□□□ -0.11
ZNF540-208ENST00000589857 TMF1P82094 1093 aa14.36□□□□□ -0.11
ZNF540-208ENST00000589857 FAM9BQ8IZU0 186 aa14.36□□□□□ -0.11
ZNF540-208ENST00000589857 MYBBP1AQ9BQG0 1328 aaKnown RBP14.36□□□□□ -0.11
ZNF540-208ENST00000589857 EFCAB6Q5THR3 1501 aa14.36□□□□□ -0.11
ZNF540-208ENST00000589857 EIF3AQ14152 1382 aaKnown RBP14.35□□□□□ -0.11
ZNF540-208ENST00000589857 MEX3CQ5U5Q3 659 aaKnown RBP14.35□□□□□ -0.11
ZNF540-208ENST00000589857 ZNF772Q68DY9 489 aaPredicted RBP14.35□□□□□ -0.11
ZNF540-208ENST00000589857 NKTRP30414 1462 aaKnown RBP14.34□□□□□ -0.11
ZNF540-208ENST00000589857 MROH1Q8NDA8 1641 aa14.33□□□□□ -0.11
ZNF540-208ENST00000589857 LMTK2Q8IWU2 1503 aa14.33□□□□□ -0.12
ZNF540-208ENST00000589857 C14orf37Q86TY3 774 aa14.33□□□□□ -0.12
ZNF540-208ENST00000589857 TMC1Q8TDI8 760 aa14.33□□□□□ -0.12
ZNF540-208ENST00000589857 SPATA31A6Q5VVP1 1343 aa14.33□□□□□ -0.12
ZNF540-208ENST00000589857 KDM5AP29375 1690 aaKnown RBP14.33□□□□□ -0.12
ZNF540-208ENST00000589857 MSH5O43196 834 aa14.32□□□□□ -0.12
ZNF540-208ENST00000589857 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.32□□□□□ -0.12
ZNF540-208ENST00000589857 CEP152O94986 1710 aa14.32□□□□□ -0.12
ZNF540-208ENST00000589857 NCOA3Q9Y6Q9 1424 aa14.32□□□□□ -0.12
ZNF540-208ENST00000589857 CADPS2Q86UW7 1296 aa14.31□□□□□ -0.12
ZNF540-208ENST00000589857 INSRP06213 1382 aa14.31□□□□□ -0.12
ZNF540-208ENST00000589857 E9PCH4 1651 aa14.3□□□□□ -0.12
ZNF540-208ENST00000589857 ATF3P18847 181 aa14.3□□□□□ -0.12
ZNF540-208ENST00000589857 NLRP13Q86W25 1043 aa14.3□□□□□ -0.12
ZNF540-208ENST00000589857 PIK3C2BO00750 1634 aa14.3□□□□□ -0.12
ZNF540-208ENST00000589857 SPHKAPQ2M3C7 1700 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms