RNA–Protein interactions for RNA: ENST00000589797.5

RETREG3-208, Transcript of reticulophagy regulator family member 3, humanhuman

TSL 2

Gene RETREG3, Length 4,149 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-208ENST00000589797 RIPK4P57078 832 aa18.61■□□□□ 0.57
RETREG3-208ENST00000589797 SLKQ9H2G2 1235 aaPredicted RBP18.61■□□□□ 0.57
RETREG3-208ENST00000589797 E9PSI1 815 aa18.61■□□□□ 0.57
RETREG3-208ENST00000589797 CABP1Q9NZU7 370 aa18.61■□□□□ 0.57
RETREG3-208ENST00000589797 KIF14Q15058 1648 aa18.6■□□□□ 0.57
RETREG3-208ENST00000589797 WDR62O43379 1518 aa18.6■□□□□ 0.57
RETREG3-208ENST00000589797 IDI1Q13907 227 aa18.6■□□□□ 0.57
RETREG3-208ENST00000589797 SLC26A8Q96RN1 970 aa18.6■□□□□ 0.57
RETREG3-208ENST00000589797 AMPHP49418 695 aa18.59■□□□□ 0.57
RETREG3-208ENST00000589797 SLC4A10Q6U841 1118 aa18.59■□□□□ 0.57
RETREG3-208ENST00000589797 BECN1Q14457 450 aa18.59■□□□□ 0.57
RETREG3-208ENST00000589797 WAPLQ7Z5K2 1190 aa18.59■□□□□ 0.57
RETREG3-208ENST00000589797 EIF4G3O43432 1585 aaKnown RBP18.59■□□□□ 0.57
RETREG3-208ENST00000589797 KIAA0556O60303 1618 aa18.58■□□□□ 0.57
RETREG3-208ENST00000589797 DIAPH1O60610 1272 aaKnown RBP18.58■□□□□ 0.57
RETREG3-208ENST00000589797 DISP3Q9P2K9 1392 aa18.58■□□□□ 0.57
RETREG3-208ENST00000589797 COG3Q96JB2 828 aa18.58■□□□□ 0.56
RETREG3-208ENST00000589797 CD109Q6YHK3 1445 aa18.58■□□□□ 0.56
RETREG3-208ENST00000589797 FBLN1P23142 703 aa18.57■□□□□ 0.56
RETREG3-208ENST00000589797 TSR2Q969E8 191 aaKnown RBP18.57■□□□□ 0.56
RETREG3-208ENST00000589797 TRAPPC8Q9Y2L5 1435 aa18.57■□□□□ 0.56
RETREG3-208ENST00000589797 ABCA5Q8WWZ7 1642 aa18.57■□□□□ 0.56
RETREG3-208ENST00000589797 NECTIN2Q92692 538 aa18.57■□□□□ 0.56
RETREG3-208ENST00000589797 RTN4Q9NQC3 1192 aaKnown RBP18.56■□□□□ 0.56
RETREG3-208ENST00000589797 PMFBP1Q8TBY8 1022 aa18.56■□□□□ 0.56
RETREG3-208ENST00000589797 RUNDC1Q96C34 613 aa18.55■□□□□ 0.56
RETREG3-208ENST00000589797 CFAP43Q8NDM7 1665 aa18.55■□□□□ 0.56
RETREG3-208ENST00000589797 IPO8O15397 1037 aaKnown RBP18.55■□□□□ 0.56
RETREG3-208ENST00000589797 STAC3Q96MF2 364 aa18.55■□□□□ 0.56
RETREG3-208ENST00000589797 IPO9Q96P70 1041 aaKnown RBP18.55■□□□□ 0.56
RETREG3-208ENST00000589797 ADGRL1O94910 1474 aa18.55■□□□□ 0.56
RETREG3-208ENST00000589797 C20orf194Q5TEA3 1177 aa18.55■□□□□ 0.56
RETREG3-208ENST00000589797 RWDD1Q9H446 243 aaPredicted RBP18.54■□□□□ 0.56
RETREG3-208ENST00000589797 MS4A1P11836 297 aa18.54■□□□□ 0.56
RETREG3-208ENST00000589797 MFAP1P55081 439 aaKnown RBP18.53■□□□□ 0.56
RETREG3-208ENST00000589797 CDK19Q9BWU1 502 aa18.53■□□□□ 0.56
RETREG3-208ENST00000589797 SYCP2Q9BX26 1530 aa18.52■□□□□ 0.56
RETREG3-208ENST00000589797 FANCAO15360 1455 aa18.51■□□□□ 0.55
RETREG3-208ENST00000589797 RBM33Q96EV2 1170 aaKnown RBP18.51■□□□□ 0.55
RETREG3-208ENST00000589797 CEBPAP49715 358 aaPredicted RBP18.51■□□□□ 0.55
RETREG3-208ENST00000589797 TCOF1Q13428 1488 aaKnown RBP18.5■□□□□ 0.55
RETREG3-208ENST00000589797 TARBP1Q13395 1621 aaKnown RBP18.5■□□□□ 0.55
RETREG3-208ENST00000589797 DEKP35659 375 aaKnown RBP18.49■□□□□ 0.55
RETREG3-208ENST00000589797 ZKSCAN2Q63HK3 967 aa18.48■□□□□ 0.55
RETREG3-208ENST00000589797 PZPP20742 1482 aa18.48■□□□□ 0.55
RETREG3-208ENST00000589797 PRKAR2BP31323 418 aa18.47■□□□□ 0.55
RETREG3-208ENST00000589797 OS9Q13438 667 aaPredicted RBP18.47■□□□□ 0.55
RETREG3-208ENST00000589797 TESK2Q96S53 571 aa18.47■□□□□ 0.55
RETREG3-208ENST00000589797 SLC52A1Q9NWF4 448 aa18.47■□□□□ 0.55
RETREG3-208ENST00000589797 RRS1Q15050 365 aaKnown RBP18.47■□□□□ 0.55
RETREG3-208ENST00000589797 CENPQQ7L2Z9 268 aaPredicted RBP18.47■□□□□ 0.55
RETREG3-208ENST00000589797 NUP160Q12769 1436 aa18.47■□□□□ 0.55
RETREG3-208ENST00000589797 NCLP19338 710 aaKnown RBP18.47■□□□□ 0.55
RETREG3-208ENST00000589797 EXOSC9Q06265 439 aaKnown RBP18.47■□□□□ 0.55
RETREG3-208ENST00000589797 CSB-PGBD3P0DP91 1061 aa18.46■□□□□ 0.55
RETREG3-208ENST00000589797 THUMPD2Q9BTF0 503 aaKnown RBP18.46■□□□□ 0.55
RETREG3-208ENST00000589797 PLCH2O75038 1416 aa18.45■□□□□ 0.54
RETREG3-208ENST00000589797 FOXD4L1Q9NU39 408 aa18.45■□□□□ 0.54
RETREG3-208ENST00000589797 TAOK2Q9UL54 1235 aa18.45■□□□□ 0.54
RETREG3-208ENST00000589797 SAMD9Q5K651 1589 aa18.45■□□□□ 0.54
RETREG3-208ENST00000589797 EIF5BO60841 1220 aaKnown RBP18.45■□□□□ 0.54
RETREG3-208ENST00000589797 KDM6BO15054 1643 aa18.45■□□□□ 0.54
RETREG3-208ENST00000589797 ZNF330Q9Y3S2 320 aaPredicted RBP18.45■□□□□ 0.54
RETREG3-208ENST00000589797 ANKRD45Q5TZF3 282 aa18.43■□□□□ 0.54
RETREG3-208ENST00000589797 DZIP1LQ8IYY4 767 aaKnown RBP18.43■□□□□ 0.54
RETREG3-208ENST00000589797 PBRM1Q86U86 1689 aa18.43■□□□□ 0.54
RETREG3-208ENST00000589797 NOS1P29475 1434 aa18.43■□□□□ 0.54
RETREG3-208ENST00000589797 NSD3Q9BZ95 1437 aa18.42■□□□□ 0.54
RETREG3-208ENST00000589797 CEP170Q5SW79 1584 aa18.42■□□□□ 0.54
RETREG3-208ENST00000589797 ZNF428Q96B54 188 aa18.42■□□□□ 0.54
RETREG3-208ENST00000589797 ASXL2Q76L83 1435 aa18.42■□□□□ 0.54
RETREG3-208ENST00000589797 HSP90AB1P08238 724 aaKnown RBP18.42■□□□□ 0.54
RETREG3-208ENST00000589797 CALD1Q05682 793 aaKnown RBP18.41■□□□□ 0.54
RETREG3-208ENST00000589797 NLRP6P59044 892 aa18.41■□□□□ 0.54
RETREG3-208ENST00000589797 DHX29Q7Z478 1369 aaKnown RBP18.41■□□□□ 0.54
RETREG3-208ENST00000589797 GZF1Q9H116 711 aaPredicted RBP18.41■□□□□ 0.54
RETREG3-208ENST00000589797 WWC1Q8IX03 1113 aa18.4■□□□□ 0.54
RETREG3-208ENST00000589797 LNPKQ9C0E8 428 aa18.4■□□□□ 0.54
RETREG3-208ENST00000589797 SMG6Q86US8 1419 aaKnown RBP18.4■□□□□ 0.54
RETREG3-208ENST00000589797 EIF2S2P20042 333 aaKnown RBP18.39■□□□□ 0.54
RETREG3-208ENST00000589797 STK31Q9BXU1 1019 aa18.39■□□□□ 0.54
RETREG3-208ENST00000589797 FAM161AQ3B820 660 aa18.39■□□□□ 0.53
RETREG3-208ENST00000589797 C1orf115Q9H7X2 142 aa18.38■□□□□ 0.53
RETREG3-208ENST00000589797 FAM135AQ9P2D6 1515 aa18.38■□□□□ 0.53
RETREG3-208ENST00000589797 PER1O15534 1290 aaPredicted RBP18.37■□□□□ 0.53
RETREG3-208ENST00000589797 AMER1Q5JTC6 1135 aaPredicted RBP18.37■□□□□ 0.53
RETREG3-208ENST00000589797 PRAG1Q86YV5 1406 aa18.36■□□□□ 0.53
RETREG3-208ENST00000589797 CHMP4BQ9H444 224 aaKnown RBP18.36■□□□□ 0.53
RETREG3-208ENST00000589797 SLFN5Q08AF3 891 aa18.36■□□□□ 0.53
RETREG3-208ENST00000589797 DCTN1Q14203 1278 aa18.36■□□□□ 0.53
RETREG3-208ENST00000589797 SULT6B1Q6IMI4 303 aa18.36■□□□□ 0.53
RETREG3-208ENST00000589797 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.36■□□□□ 0.53
RETREG3-208ENST00000589797 PSME1Q06323 249 aa18.35■□□□□ 0.53
RETREG3-208ENST00000589797 NGEFQ8N5V2 710 aa18.35■□□□□ 0.53
RETREG3-208ENST00000589797 CARD14Q9BXL6 1004 aa18.35■□□□□ 0.53
RETREG3-208ENST00000589797 XPCQ01831 940 aaPredicted RBP18.34■□□□□ 0.53
RETREG3-208ENST00000589797 CASC1Q6TDU7 716 aa18.34■□□□□ 0.53
RETREG3-208ENST00000589797 NME9Q86XW9 330 aa18.34■□□□□ 0.53
RETREG3-208ENST00000589797 C14orf93Q9H972 538 aaKnown RBP18.34■□□□□ 0.53
RETREG3-208ENST00000589797 FANCIQ9NVI1 1328 aa18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms