RNA–Protein interactions for RNA: ENST00000584049.5

BDNF-219, Transcript of brain derived neurotrophic factor, humanhuman

TSL 1 (best)

Gene BDNF, Length 4,030 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BDNF-219ENST00000584049 CDCA8Q53HL2 280 aa11.34□□□□□ -0.59
BDNF-219ENST00000584049 C20orf194Q5TEA3 1177 aa11.34□□□□□ -0.59
BDNF-219ENST00000584049 PPP2R1AP30153 589 aa11.34□□□□□ -0.59
BDNF-219ENST00000584049 C8orf34Q49A92 452 aa11.34□□□□□ -0.59
BDNF-219ENST00000584049 STAC3Q96MF2 364 aa11.34□□□□□ -0.59
BDNF-219ENST00000584049 VIRMAQ69YN4 1812 aaKnown RBP11.33□□□□□ -0.6
BDNF-219ENST00000584049 KNSTRNQ9Y448 316 aa11.33□□□□□ -0.6
BDNF-219ENST00000584049 ARHGAP5Q13017 1502 aa11.33□□□□□ -0.6
BDNF-219ENST00000584049 SCAPERQ9BY12 1400 aa11.33□□□□□ -0.6
BDNF-219ENST00000584049 TRMT2AQ8IZ69 625 aaKnown RBP11.32□□□□□ -0.6
BDNF-219ENST00000584049 NGEFQ8N5V2 710 aa11.32□□□□□ -0.6
BDNF-219ENST00000584049 AMER1Q5JTC6 1135 aaPredicted RBP11.32□□□□□ -0.6
BDNF-219ENST00000584049 TTC37Q6PGP7 1564 aa11.32□□□□□ -0.6
BDNF-219ENST00000584049 SPHKAPQ2M3C7 1700 aa11.32□□□□□ -0.6
BDNF-219ENST00000584049 SLFN5Q08AF3 891 aa11.32□□□□□ -0.6
BDNF-219ENST00000584049 SCAF11Q99590 1463 aaKnown RBP11.31□□□□□ -0.6
BDNF-219ENST00000584049 NINLQ9Y2I6 1382 aa11.31□□□□□ -0.6
BDNF-219ENST00000584049 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.31□□□□□ -0.6
BDNF-219ENST00000584049 NKTRP30414 1462 aaKnown RBP11.3□□□□□ -0.6
BDNF-219ENST00000584049 MYOM1P52179 1685 aa11.3□□□□□ -0.6
BDNF-219ENST00000584049 SKAP1Q86WV1 359 aa11.3□□□□□ -0.6
BDNF-219ENST00000584049 FBLN2P98095 1184 aa11.3□□□□□ -0.6
BDNF-219ENST00000584049 KIAA1210Q9ULL0 1709 aa11.29□□□□□ -0.6
BDNF-219ENST00000584049 ANO8Q9HCE9 1232 aaPredicted RBP11.29□□□□□ -0.6
BDNF-219ENST00000584049 TRPM2O94759 1503 aa11.29□□□□□ -0.6
BDNF-219ENST00000584049 CEP152O94986 1710 aa11.29□□□□□ -0.6
BDNF-219ENST00000584049 NEURL4Q96JN8 1562 aa11.28□□□□□ -0.6
BDNF-219ENST00000584049 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.27□□□□□ -0.6
BDNF-219ENST00000584049 KDM5AP29375 1690 aaKnown RBP11.27□□□□□ -0.6
BDNF-219ENST00000584049 SLC24A1O60721 1099 aa11.27□□□□□ -0.61
BDNF-219ENST00000584049 FRAT1Q92837 279 aaPredicted RBP11.27□□□□□ -0.61
BDNF-219ENST00000584049 PRKCSHP14314 528 aaPredicted RBP11.26□□□□□ -0.61
BDNF-219ENST00000584049 ZMYM3Q14202 1370 aa11.26□□□□□ -0.61
BDNF-219ENST00000584049 E9PSI1 815 aa11.26□□□□□ -0.61
BDNF-219ENST00000584049 CGNL1Q0VF96 1302 aa11.26□□□□□ -0.61
BDNF-219ENST00000584049 PTPRTO14522 1441 aa11.26□□□□□ -0.61
BDNF-219ENST00000584049 PDE3AQ14432 1141 aa11.25□□□□□ -0.61
BDNF-219ENST00000584049 MAPK8IP3Q9UPT6 1336 aa11.25□□□□□ -0.61
BDNF-219ENST00000584049 RTN4Q9NQC3 1192 aaKnown RBP11.25□□□□□ -0.61
BDNF-219ENST00000584049 BRPF3Q9ULD4 1205 aa11.25□□□□□ -0.61
BDNF-219ENST00000584049 SLC4A3P48751 1232 aa11.25□□□□□ -0.61
BDNF-219ENST00000584049 AAMPQ13685 434 aa11.24□□□□□ -0.61
BDNF-219ENST00000584049 ABCC1P33527 1531 aa11.24□□□□□ -0.61
BDNF-219ENST00000584049 SHROOM2Q13796 1616 aa11.24□□□□□ -0.61
BDNF-219ENST00000584049 DEPDC5O75140 1603 aa11.23□□□□□ -0.61
BDNF-219ENST00000584049 RGS3P49796 1198 aa11.23□□□□□ -0.61
BDNF-219ENST00000584049 PLCH2O75038 1416 aa11.22□□□□□ -0.61
BDNF-219ENST00000584049 TET3O43151 1660 aa11.22□□□□□ -0.61
BDNF-219ENST00000584049 CLTCL1P53675 1640 aa11.22□□□□□ -0.61
BDNF-219ENST00000584049 RTEL1-TNFRSF6BF6WH68 1400 aa11.22□□□□□ -0.61
BDNF-219ENST00000584049 FRAT2O75474 233 aaPredicted RBP11.21□□□□□ -0.61
BDNF-219ENST00000584049 USP19O94966 1318 aa11.21□□□□□ -0.61
BDNF-219ENST00000584049 BECN1Q14457 450 aa11.21□□□□□ -0.62
BDNF-219ENST00000584049 MYOM2P54296 1465 aa11.2□□□□□ -0.62
BDNF-219ENST00000584049 APAF1O14727 1248 aa11.2□□□□□ -0.62
BDNF-219ENST00000584049 POLR3AO14802 1390 aaPredicted RBP11.2□□□□□ -0.62
BDNF-219ENST00000584049 FAM43AQ8N2R8 423 aa11.2□□□□□ -0.62
BDNF-219ENST00000584049 ARAP3Q8WWN8 1544 aa11.2□□□□□ -0.62
BDNF-219ENST00000584049 CLUAP1Q96AJ1 413 aa11.19□□□□□ -0.62
BDNF-219ENST00000584049 SPINK5Q9NQ38 1064 aaPredicted RBP11.19□□□□□ -0.62
BDNF-219ENST00000584049 MYO3AQ8NEV4 1616 aa11.19□□□□□ -0.62
BDNF-219ENST00000584049 NLRP1Q9C000 1473 aa11.19□□□□□ -0.62
BDNF-219ENST00000584049 CENPJQ9HC77 1338 aaPredicted RBP11.19□□□□□ -0.62
BDNF-219ENST00000584049 SBNO2Q9Y2G9 1366 aa11.19□□□□□ -0.62
BDNF-219ENST00000584049 ERVK-7P63135 1459 aa11.19□□□□□ -0.62
BDNF-219ENST00000584049 VWDEQ8N2E2 1590 aa11.19□□□□□ -0.62
BDNF-219ENST00000584049 BCAR3O75815 825 aa11.19□□□□□ -0.62
BDNF-219ENST00000584049 EFCAB2Q5VUJ9 269 aa11.18□□□□□ -0.62
BDNF-219ENST00000584049 CCDC146Q8IYE0 955 aa11.18□□□□□ -0.62
BDNF-219ENST00000584049 MAP3K4Q9Y6R4 1608 aa11.18□□□□□ -0.62
BDNF-219ENST00000584049 IGHDP01880 384 aa11.18□□□□□ -0.62
BDNF-219ENST00000584049 ZFYVE16Q7Z3T8 1539 aa11.18□□□□□ -0.62
BDNF-219ENST00000584049 PMFBP1Q8TBY8 1022 aa11.17□□□□□ -0.62
BDNF-219ENST00000584049 ABCA6Q8N139 1617 aa11.16□□□□□ -0.62
BDNF-219ENST00000584049 TRAPPC8Q9Y2L5 1435 aa11.16□□□□□ -0.62
BDNF-219ENST00000584049 NCBP3Q53F19 620 aaKnown RBP11.16□□□□□ -0.62
BDNF-219ENST00000584049 SHPRHQ149N8 1683 aa11.15□□□□□ -0.62
BDNF-219ENST00000584049 IQSEC2Q5JU85 1478 aa11.15□□□□□ -0.62
BDNF-219ENST00000584049 IFT172Q9UG01 1749 aa11.15□□□□□ -0.62
BDNF-219ENST00000584049 WWC1Q8IX03 1113 aa11.15□□□□□ -0.62
BDNF-219ENST00000584049 UHRF1BP1LA0JNW5 1464 aa11.14□□□□□ -0.63
BDNF-219ENST00000584049 L1TD1Q5T7N2 865 aaKnown RBP11.14□□□□□ -0.63
BDNF-219ENST00000584049 RSPH6AQ9H0K4 717 aa11.14□□□□□ -0.63
BDNF-219ENST00000584049 CHD1O14646 1710 aa11.14□□□□□ -0.63
BDNF-219ENST00000584049 USP32Q8NFA0 1604 aa11.14□□□□□ -0.63
BDNF-219ENST00000584049 KANK1Q14678 1352 aa11.14□□□□□ -0.63
BDNF-219ENST00000584049 NRXN1Q9ULB1 1477 aa11.14□□□□□ -0.63
BDNF-219ENST00000584049 CANXP27824 592 aaKnown RBP11.14□□□□□ -0.63
BDNF-219ENST00000584049 UPF2Q9HAU5 1272 aaKnown RBP11.14□□□□□ -0.63
BDNF-219ENST00000584049 PHF23Q9BUL5 403 aaPredicted RBP11.13□□□□□ -0.63
BDNF-219ENST00000584049 ZCCHC11Q5TAX3 1644 aaKnown RBP11.13□□□□□ -0.63
BDNF-219ENST00000584049 SPAG9O60271 1321 aaKnown RBP11.13□□□□□ -0.63
BDNF-219ENST00000584049 SETBP1Q9Y6X0 1596 aa11.13□□□□□ -0.63
BDNF-219ENST00000584049 DMRT2Q9Y5R5 561 aa11.13□□□□□ -0.63
BDNF-219ENST00000584049 ANTXR1Q9H6X2 564 aa11.13□□□□□ -0.63
BDNF-219ENST00000584049 INO80Q9ULG1 1556 aaPredicted RBP11.13□□□□□ -0.63
BDNF-219ENST00000584049 TBC1D32Q96NH3 1257 aa11.13□□□□□ -0.63
BDNF-219ENST00000584049 KIF1BO60333 1816 aa11.12□□□□□ -0.63
BDNF-219ENST00000584049 WDR63Q8IWG1 891 aa11.12□□□□□ -0.63
BDNF-219ENST00000584049 CARD14Q9BXL6 1004 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms