RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-223ENST00000583595 GPIHBP1Q8IV16 184 aa9.31□□□□□ -0.92
SS18-223ENST00000583595 LMOD2Q6P5Q4 547 aa9.3□□□□□ -0.92
SS18-223ENST00000583595 DNAJB2P25686 324 aa9.29□□□□□ -0.92
SS18-223ENST00000583595 RCCD1A6NED2 376 aa9.28□□□□□ -0.92
SS18-223ENST00000583595 OATP04181 439 aa9.28□□□□□ -0.92
SS18-223ENST00000583595 SLF2Q8IX21 1173 aa9.28□□□□□ -0.92
SS18-223ENST00000583595 SLC4A3P48751 1232 aa9.27□□□□□ -0.93
SS18-223ENST00000583595 BRPF1P55201 1214 aaPredicted RBP9.27□□□□□ -0.93
SS18-223ENST00000583595 IFFO2Q5TF58 517 aa9.27□□□□□ -0.93
SS18-223ENST00000583595 ITGBL1O95965 494 aaPredicted RBP9.26□□□□□ -0.93
SS18-223ENST00000583595 PXYLP1Q8TE99 480 aa9.26□□□□□ -0.93
SS18-223ENST00000583595 TMEM134Q9H6X4 195 aa9.26□□□□□ -0.93
SS18-223ENST00000583595 SUPT5HO00267 1087 aaKnown RBP9.25□□□□□ -0.93
SS18-223ENST00000583595 METTL3Q86U44 580 aaKnown RBP9.25□□□□□ -0.93
SS18-223ENST00000583595 NECTIN2Q92692 538 aa9.25□□□□□ -0.93
SS18-223ENST00000583595 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.24□□□□□ -0.93
SS18-223ENST00000583595 APLP1P51693 650 aa9.24□□□□□ -0.93
SS18-223ENST00000583595 KCNC4Q03721 635 aa9.24□□□□□ -0.93
SS18-223ENST00000583595 TJAP1Q5JTD0 557 aa9.21□□□□□ -0.94
SS18-223ENST00000583595 A0A0G2JS52 829 aa9.2□□□□□ -0.94
SS18-223ENST00000583595 MTRQ99707 1265 aa9.2□□□□□ -0.94
SS18-223ENST00000583595 ZC3H15Q8WU90 426 aaKnown RBP9.18□□□□□ -0.94
SS18-223ENST00000583595 NLRP7Q8WX94 980 aa9.18□□□□□ -0.94
SS18-223ENST00000583595 PHOX2BQ99453 314 aa9.18□□□□□ -0.94
SS18-223ENST00000583595 SLC10A3P09131 477 aa9.17□□□□□ -0.94
SS18-223ENST00000583595 NEUROD2Q15784 382 aa9.17□□□□□ -0.94
SS18-223ENST00000583595 PRR14Q9BWN1 585 aa9.17□□□□□ -0.94
SS18-223ENST00000583595 IL21Q9HBE4 155 aa9.17□□□□□ -0.94
SS18-223ENST00000583595 COPS2P61201 443 aa9.16□□□□□ -0.94
SS18-223ENST00000583595 MAP2K5Q13163 448 aa9.16□□□□□ -0.94
SS18-223ENST00000583595 ZNF516Q92618 1163 aa9.16□□□□□ -0.94
SS18-223ENST00000583595 SLC24A3Q9HC58 644 aa9.16□□□□□ -0.94
SS18-223ENST00000583595 CFHP08603 1231 aa9.15□□□□□ -0.94
SS18-223ENST00000583595 MINK1Q8N4C8 1332 aaPredicted RBP9.14□□□□□ -0.95
SS18-223ENST00000583595 IRF6O14896 467 aa9.14□□□□□ -0.95
SS18-223ENST00000583595 KMT5BQ4FZB7 885 aa9.14□□□□□ -0.95
SS18-223ENST00000583595 RSPH4AQ5TD94 716 aa9.14□□□□□ -0.95
SS18-223ENST00000583595 PCDHB3Q9Y5E6 796 aa9.14□□□□□ -0.95
SS18-223ENST00000583595 DDX11L8A8MPP1 907 aa9.12□□□□□ -0.95
SS18-223ENST00000583595 ACTN4O43707 911 aaKnown RBP9.12□□□□□ -0.95
SS18-223ENST00000583595 BLOC1S3Q6QNY0 202 aa9.11□□□□□ -0.95
SS18-223ENST00000583595 RDH13Q8NBN7 331 aa9.11□□□□□ -0.95
SS18-223ENST00000583595 NKX2-3Q8TAU0 364 aa9.11□□□□□ -0.95
SS18-223ENST00000583595 RGS20O76081 388 aa9.1□□□□□ -0.95
SS18-223ENST00000583595 CCDC102AQ96A19 550 aa9.1□□□□□ -0.95
SS18-223ENST00000583595 ZPR1O75312 459 aa9.09□□□□□ -0.95
SS18-223ENST00000583595 SULF1Q8IWU6 871 aa9.08□□□□□ -0.96
SS18-223ENST00000583595 KRI1Q8N9T8 703 aaKnown RBP9.08□□□□□ -0.96
SS18-223ENST00000583595 MDM2Q00987 491 aaPredicted RBP9.07□□□□□ -0.96
SS18-223ENST00000583595 ZMYND10O75800 440 aa9.06□□□□□ -0.96
SS18-223ENST00000583595 PPP1R18Q6NYC8 613 aa9.06□□□□□ -0.96
SS18-223ENST00000583595 BARGINQ6ZT62 677 aa9.06□□□□□ -0.96
SS18-223ENST00000583595 PUS10Q3MIT2 529 aaKnown RBP9.05□□□□□ -0.96
SS18-223ENST00000583595 NR1I2O75469 434 aa9.04□□□□□ -0.96
SS18-223ENST00000583595 GCGRP47871 477 aa9.04□□□□□ -0.96
SS18-223ENST00000583595 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.04□□□□□ -0.96
SS18-223ENST00000583595 TLL1O43897 1013 aa9.03□□□□□ -0.96
SS18-223ENST00000583595 SCUBE3Q8IX30 993 aa9.03□□□□□ -0.96
SS18-223ENST00000583595 FUT2Q10981 343 aa9.02□□□□□ -0.97
SS18-223ENST00000583595 CD46P15529 392 aa9.01□□□□□ -0.97
SS18-223ENST00000583595 GGCXP38435 758 aa9.01□□□□□ -0.97
SS18-223ENST00000583595 ATP6V1AP38606 617 aa9.01□□□□□ -0.97
SS18-223ENST00000583595 CLCN1P35523 988 aa9□□□□□ -0.97
SS18-223ENST00000583595 MORN1Q5T089 497 aa9□□□□□ -0.97
SS18-223ENST00000583595 GPCPD1Q9NPB8 672 aa9□□□□□ -0.97
SS18-223ENST00000583595 UBTFP17480 764 aaKnown RBP8.99□□□□□ -0.97
SS18-223ENST00000583595 PODXL2Q9NZ53 605 aa8.99□□□□□ -0.97
SS18-223ENST00000583595 TMUB1Q9BVT8 246 aa8.98□□□□□ -0.97
SS18-223ENST00000583595 ADH1BP00325 375 aa8.97□□□□□ -0.97
SS18-223ENST00000583595 REPIN1Q9BWE0 567 aaKnown RBP8.97□□□□□ -0.97
SS18-223ENST00000583595 PRKD2Q9BZL6 878 aa8.97□□□□□ -0.97
SS18-223ENST00000583595 FAM217BQ9NTX9 383 aaPredicted RBP8.97□□□□□ -0.97
SS18-223ENST00000583595 SLC27A5Q9Y2P5 690 aa8.97□□□□□ -0.97
SS18-223ENST00000583595 RNF223E7ERA6 249 aa8.96□□□□□ -0.98
SS18-223ENST00000583595 S1PR4O95977 384 aa8.96□□□□□ -0.98
SS18-223ENST00000583595 SPSB2Q99619 263 aa8.96□□□□□ -0.98
SS18-223ENST00000583595 KDM4AO75164 1064 aa8.95□□□□□ -0.98
SS18-223ENST00000583595 GRIPAP1Q4V328 841 aa8.95□□□□□ -0.98
SS18-223ENST00000583595 IL27Q8NEV9 243 aa8.95□□□□□ -0.98
SS18-223ENST00000583595 IRX2Q9BZI1 471 aaPredicted RBP8.95□□□□□ -0.98
SS18-223ENST00000583595 SLC6A16Q9GZN6 736 aa8.95□□□□□ -0.98
SS18-223ENST00000583595 TTLL12Q14166 644 aaPredicted RBP8.94□□□□□ -0.98
SS18-223ENST00000583595 AMHR2Q16671 573 aa8.94□□□□□ -0.98
SS18-223ENST00000583595 PPEF1O14829 653 aaPredicted RBP8.93□□□□□ -0.98
SS18-223ENST00000583595 FMNL1O95466 1100 aaPredicted RBP8.93□□□□□ -0.98
SS18-223ENST00000583595 SSTR3P32745 418 aaPredicted RBP8.93□□□□□ -0.98
SS18-223ENST00000583595 THAP11Q96EK4 314 aa8.93□□□□□ -0.98
SS18-223ENST00000583595 AK7Q96M32 723 aa8.93□□□□□ -0.98
SS18-223ENST00000583595 ZMYND15Q9H091 742 aa8.93□□□□□ -0.98
SS18-223ENST00000583595 GPBP1L1Q9HC44 474 aaPredicted RBP8.93□□□□□ -0.98
SS18-223ENST00000583595 V9GY48 417 aaPredicted RBP8.93□□□□□ -0.98
SS18-223ENST00000583595 TRIM66O15016 1216 aa8.92□□□□□ -0.98
SS18-223ENST00000583595 USP46P62068 366 aa8.91□□□□□ -0.98
SS18-223ENST00000583595 BRICD5Q6PL45 260 aa8.91□□□□□ -0.98
SS18-223ENST00000583595 ANKLE1Q8NAG6 615 aa8.91□□□□□ -0.98
SS18-223ENST00000583595 SALL2Q9Y467 1007 aaPredicted RBP8.91□□□□□ -0.98
SS18-223ENST00000583595 GIGYF2Q6Y7W6 1299 aaKnown RBP8.9□□□□□ -0.98
SS18-223ENST00000583595 RNF19BQ6ZMZ0 732 aa8.9□□□□□ -0.98
SS18-223ENST00000583595 NUTM1Q86Y26 1132 aa8.9□□□□□ -0.98
SS18-223ENST00000583595 HLA-CQ95604 372 aa8.9□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms