RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 PCDHB3Q9Y5E6 796 aa11.12□□□□□ -0.63
SMCHD1-209ENST00000583441 SWT1Q5T5J6 900 aaKnown RBP11.11□□□□□ -0.63
SMCHD1-209ENST00000583441 PRR14Q9BWN1 585 aa11.11□□□□□ -0.63
SMCHD1-209ENST00000583441 LOC100996750A0A140TA64 210 aa11.1□□□□□ -0.63
SMCHD1-209ENST00000583441 PPEF1O14829 653 aaPredicted RBP11.1□□□□□ -0.63
SMCHD1-209ENST00000583441 KRTAP4-6Q9BYQ5 205 aa11.1□□□□□ -0.63
SMCHD1-209ENST00000583441 C11orf95C9JLR9 678 aaPredicted RBP11.09□□□□□ -0.63
SMCHD1-209ENST00000583441 CADPS2Q86UW7 1296 aa11.08□□□□□ -0.64
SMCHD1-209ENST00000583441 NFX1Q12986 1120 aaKnown RBP11.07□□□□□ -0.64
SMCHD1-209ENST00000583441 BLOC1S3Q6QNY0 202 aa11.06□□□□□ -0.64
SMCHD1-209ENST00000583441 GMPR2Q9P2T1 348 aaKnown RBP11.05□□□□□ -0.64
SMCHD1-209ENST00000583441 DACH1Q9UI36 760 aa11.05□□□□□ -0.64
SMCHD1-209ENST00000583441 TLL1O43897 1013 aa11.04□□□□□ -0.64
SMCHD1-209ENST00000583441 S1PR4O95977 384 aa11.04□□□□□ -0.64
SMCHD1-209ENST00000583441 CRIPAKQ8N1N5 446 aa11.04□□□□□ -0.64
SMCHD1-209ENST00000583441 PDIA6Q15084 440 aa11.02□□□□□ -0.65
SMCHD1-209ENST00000583441 RBM27Q9P2N5 1060 aaKnown RBP11.02□□□□□ -0.65
SMCHD1-209ENST00000583441 AXIN1O15169 862 aa11.01□□□□□ -0.65
SMCHD1-209ENST00000583441 FOXC1Q12948 553 aa11.01□□□□□ -0.65
SMCHD1-209ENST00000583441 SPDYE16A6NNV3 312 aaPredicted RBP11□□□□□ -0.65
SMCHD1-209ENST00000583441 LMOD2Q6P5Q4 547 aa10.99□□□□□ -0.65
SMCHD1-209ENST00000583441 FAM181BA6NEQ2 426 aa10.97□□□□□ -0.65
SMCHD1-209ENST00000583441 GRXCR2A6NFK2 248 aa10.97□□□□□ -0.65
SMCHD1-209ENST00000583441 PRIM1P49642 420 aaKnown RBP10.97□□□□□ -0.65
SMCHD1-209ENST00000583441 AVPP01185 164 aa10.96□□□□□ -0.65
SMCHD1-209ENST00000583441 PKD2L1Q9P0L9 805 aa10.96□□□□□ -0.65
SMCHD1-209ENST00000583441 CTC1Q2NKJ3 1217 aa10.95□□□□□ -0.66
SMCHD1-209ENST00000583441 CDHR5Q9HBB8 845 aa10.95□□□□□ -0.66
SMCHD1-209ENST00000583441 TERTO14746 1132 aaKnown RBP10.92□□□□□ -0.66
SMCHD1-209ENST00000583441 ADH1BP00325 375 aa10.92□□□□□ -0.66
SMCHD1-209ENST00000583441 PLA2G2CQ5R387 149 aa10.92□□□□□ -0.66
SMCHD1-209ENST00000583441 CYP4X1Q8N118 509 aa10.92□□□□□ -0.66
SMCHD1-209ENST00000583441 SLC6A16Q9GZN6 736 aa10.92□□□□□ -0.66
SMCHD1-209ENST00000583441 KMT5BQ4FZB7 885 aa10.91□□□□□ -0.66
SMCHD1-209ENST00000583441 PADI6Q6TGC4 694 aa10.91□□□□□ -0.66
SMCHD1-209ENST00000583441 TTC13Q8NBP0 860 aa10.91□□□□□ -0.66
SMCHD1-209ENST00000583441 SMCPP49901 116 aaPredicted RBP10.89□□□□□ -0.67
SMCHD1-209ENST00000583441 TOR4AQ9NXH8 423 aa10.89□□□□□ -0.67
SMCHD1-209ENST00000583441 ACTN4O43707 911 aaKnown RBP10.88□□□□□ -0.67
SMCHD1-209ENST00000583441 LCE2CQ5TA81 110 aa10.87□□□□□ -0.67
SMCHD1-209ENST00000583441 EYA1Q99502 592 aa10.87□□□□□ -0.67
SMCHD1-209ENST00000583441 NR1I2O75469 434 aa10.86□□□□□ -0.67
SMCHD1-209ENST00000583441 OSBPP22059 807 aa10.85□□□□□ -0.67
SMCHD1-209ENST00000583441 CD2BP2O95400 341 aaKnown RBP10.83□□□□□ -0.68
SMCHD1-209ENST00000583441 SNRPBP14678 240 aaKnown RBP10.83□□□□□ -0.68
SMCHD1-209ENST00000583441 RPIAP49247 311 aa10.83□□□□□ -0.68
SMCHD1-209ENST00000583441 SUZ12Q15022 739 aaKnown RBP10.82□□□□□ -0.68
SMCHD1-209ENST00000583441 TTC24A2A3L6 582 aaPredicted RBP10.81□□□□□ -0.68
SMCHD1-209ENST00000583441 SENP2Q9HC62 589 aa10.81□□□□□ -0.68
SMCHD1-209ENST00000583441 ATP13A2Q9NQ11 1180 aa10.81□□□□□ -0.68
SMCHD1-209ENST00000583441 CFHP08603 1231 aa10.8□□□□□ -0.68
SMCHD1-209ENST00000583441 DNAJB2P25686 324 aa10.8□□□□□ -0.68
SMCHD1-209ENST00000583441 NPDC1Q9NQX5 325 aaPredicted RBP10.8□□□□□ -0.68
SMCHD1-209ENST00000583441 SLC16A10Q8TF71 515 aa10.79□□□□□ -0.68
SMCHD1-209ENST00000583441 ZSCAN1Q8NBB4 408 aa10.78□□□□□ -0.68
SMCHD1-209ENST00000583441 TRIM47Q96LD4 638 aa10.78□□□□□ -0.68
SMCHD1-209ENST00000583441 SCUBE3Q8IX30 993 aa10.76□□□□□ -0.69
SMCHD1-209ENST00000583441 SPSB2Q99619 263 aa10.75□□□□□ -0.69
SMCHD1-209ENST00000583441 KIFC2Q96AC6 838 aa10.74□□□□□ -0.69
SMCHD1-209ENST00000583441 TMEM134Q9H6X4 195 aa10.74□□□□□ -0.69
SMCHD1-209ENST00000583441 RBM46Q8TBY0 533 aaKnown RBP10.72□□□□□ -0.69
SMCHD1-209ENST00000583441 E2F4Q16254 413 aa10.71□□□□□ -0.69
SMCHD1-209ENST00000583441 FCF1Q9Y324 198 aaKnown RBP10.71□□□□□ -0.69
SMCHD1-209ENST00000583441 GMPRP36959 345 aa10.7□□□□□ -0.7
SMCHD1-209ENST00000583441 ARIH1Q9Y4X5 557 aaPredicted RBP10.7□□□□□ -0.7
SMCHD1-209ENST00000583441 DCAF8L2P0C7V8 631 aa10.69□□□□□ -0.7
SMCHD1-209ENST00000583441 SMPD1P17405 629 aa10.68□□□□□ -0.7
SMCHD1-209ENST00000583441 SNIP1Q8TAD8 396 aaKnown RBP10.68□□□□□ -0.7
SMCHD1-209ENST00000583441 ZBTB24O43167 697 aaPredicted RBP10.67□□□□□ -0.7
SMCHD1-209ENST00000583441 SLC10A3P09131 477 aa10.67□□□□□ -0.7
SMCHD1-209ENST00000583441 PUS10Q3MIT2 529 aaKnown RBP10.67□□□□□ -0.7
SMCHD1-209ENST00000583441 RCCD1A6NED2 376 aa10.66□□□□□ -0.7
SMCHD1-209ENST00000583441 LORP23490 312 aaPredicted RBP10.66□□□□□ -0.7
SMCHD1-209ENST00000583441 IRF7Q92985 503 aa10.66□□□□□ -0.7
SMCHD1-209ENST00000583441 NXF1Q9UBU9 619 aaKnown RBP10.66□□□□□ -0.7
SMCHD1-209ENST00000583441 WNT7AO00755 349 aa10.62□□□□□ -0.71
SMCHD1-209ENST00000583441 RSPH4AQ5TD94 716 aa10.61□□□□□ -0.71
SMCHD1-209ENST00000583441 ADGRG1Q9Y653 693 aa10.61□□□□□ -0.71
SMCHD1-209ENST00000583441 J3QL48 77 aa10.6□□□□□ -0.71
SMCHD1-209ENST00000583441 NPAS3Q8IXF0 933 aa10.59□□□□□ -0.71
SMCHD1-209ENST00000583441 HPS1Q92902 700 aa10.58□□□□□ -0.72
SMCHD1-209ENST00000583441 WDR70Q9NW82 654 aa10.58□□□□□ -0.72
SMCHD1-209ENST00000583441 MRGPRX2Q96LB1 330 aa10.56□□□□□ -0.72
SMCHD1-209ENST00000583441 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.55□□□□□ -0.72
SMCHD1-209ENST00000583441 FMNL1O95466 1100 aaPredicted RBP10.55□□□□□ -0.72
SMCHD1-209ENST00000583441 KCTD17Q8N5Z5 321 aa10.55□□□□□ -0.72
SMCHD1-209ENST00000583441 VEGFBP49765 207 aa10.54□□□□□ -0.72
SMCHD1-209ENST00000583441 FAM161AQ3B820 660 aa10.54□□□□□ -0.72
SMCHD1-209ENST00000583441 FAM160A2Q8N612 972 aaPredicted RBP10.54□□□□□ -0.72
SMCHD1-209ENST00000583441 PTGDRQ13258 359 aa10.52□□□□□ -0.73
SMCHD1-209ENST00000583441 THAP11Q96EK4 314 aa10.52□□□□□ -0.73
SMCHD1-209ENST00000583441 H3BM21 787 aa10.51□□□□□ -0.73
SMCHD1-209ENST00000583441 TRIM32Q13049 653 aa10.51□□□□□ -0.73
SMCHD1-209ENST00000583441 MORN1Q5T089 497 aa10.51□□□□□ -0.73
SMCHD1-209ENST00000583441 REPIN1Q9BWE0 567 aaKnown RBP10.51□□□□□ -0.73
SMCHD1-209ENST00000583441 PRDM9Q9NQV7 894 aa10.5□□□□□ -0.73
SMCHD1-209ENST00000583441 KCNMA1Q12791 1236 aa10.49□□□□□ -0.73
SMCHD1-209ENST00000583441 ERBB4Q15303 1308 aa10.49□□□□□ -0.73
SMCHD1-209ENST00000583441 ATP6V1AP38606 617 aa10.46□□□□□ -0.73
SMCHD1-209ENST00000583441 SLC27A5Q9Y2P5 690 aa10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms