RNA–Protein interactions for RNA: ENST00000582352.1

SHMT1-208, Transcript of serine hydroxymethyltransferase 1, humanhuman

Gene SHMT1, Length 2,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-208ENST00000582352 ASXL1Q8IXJ9 1541 aa15.95■□□□□ 0.14
SHMT1-208ENST00000582352 AMER1Q5JTC6 1135 aaPredicted RBP15.94■□□□□ 0.14
SHMT1-208ENST00000582352 ZNF521Q96K83 1311 aa15.94■□□□□ 0.14
SHMT1-208ENST00000582352 PIK3C2GO75747 1445 aa15.93■□□□□ 0.14
SHMT1-208ENST00000582352 SPHKAPQ2M3C7 1700 aa15.93■□□□□ 0.14
SHMT1-208ENST00000582352 SCAF11Q99590 1463 aaKnown RBP15.93■□□□□ 0.14
SHMT1-208ENST00000582352 FAM161AQ3B820 660 aa15.92■□□□□ 0.14
SHMT1-208ENST00000582352 TRPM2O94759 1503 aa15.91■□□□□ 0.14
SHMT1-208ENST00000582352 ABCC2Q92887 1545 aa15.91■□□□□ 0.14
SHMT1-208ENST00000582352 CEP152O94986 1710 aa15.91■□□□□ 0.14
SHMT1-208ENST00000582352 IL27Q8NEV9 243 aa15.91■□□□□ 0.14
SHMT1-208ENST00000582352 MYOM1P52179 1685 aa15.9■□□□□ 0.14
SHMT1-208ENST00000582352 EIF3AQ14152 1382 aaKnown RBP15.9■□□□□ 0.14
SHMT1-208ENST00000582352 SCAPERQ9BY12 1400 aa15.89■□□□□ 0.13
SHMT1-208ENST00000582352 SLFN5Q08AF3 891 aa15.89■□□□□ 0.13
SHMT1-208ENST00000582352 C8orf34Q49A92 452 aa15.88■□□□□ 0.13
SHMT1-208ENST00000582352 NPC1L1Q9UHC9 1359 aa15.88■□□□□ 0.13
SHMT1-208ENST00000582352 KDM5AP29375 1690 aaKnown RBP15.88■□□□□ 0.13
SHMT1-208ENST00000582352 ABCC1P33527 1531 aa15.88■□□□□ 0.13
SHMT1-208ENST00000582352 CHD1O14646 1710 aa15.88■□□□□ 0.13
SHMT1-208ENST00000582352 NKTRP30414 1462 aaKnown RBP15.88■□□□□ 0.13
SHMT1-208ENST00000582352 SLC4A3P48751 1232 aa15.87■□□□□ 0.13
SHMT1-208ENST00000582352 NFKBIBQ15653 356 aa15.87■□□□□ 0.13
SHMT1-208ENST00000582352 CCDC146Q8IYE0 955 aa15.87■□□□□ 0.13
SHMT1-208ENST00000582352 STAC3Q96MF2 364 aa15.87■□□□□ 0.13
SHMT1-208ENST00000582352 SHROOM2Q13796 1616 aa15.87■□□□□ 0.13
SHMT1-208ENST00000582352 RGS3P49796 1198 aa15.87■□□□□ 0.13
SHMT1-208ENST00000582352 PLCH2O75038 1416 aa15.86■□□□□ 0.13
SHMT1-208ENST00000582352 EFCAB2Q5VUJ9 269 aa15.86■□□□□ 0.13
SHMT1-208ENST00000582352 GSE1Q14687 1217 aa15.86■□□□□ 0.13
SHMT1-208ENST00000582352 CLTCL1P53675 1640 aa15.85■□□□□ 0.13
SHMT1-208ENST00000582352 TRAPPC8Q9Y2L5 1435 aa15.84■□□□□ 0.13
SHMT1-208ENST00000582352 APAF1O14727 1248 aa15.83■□□□□ 0.13
SHMT1-208ENST00000582352 TRMT2AQ8IZ69 625 aaKnown RBP15.83■□□□□ 0.13
SHMT1-208ENST00000582352 RTN4Q9NQC3 1192 aaKnown RBP15.83■□□□□ 0.13
SHMT1-208ENST00000582352 E9PSI1 815 aa15.83■□□□□ 0.12
SHMT1-208ENST00000582352 KIAA1210Q9ULL0 1709 aa15.83■□□□□ 0.12
SHMT1-208ENST00000582352 PTPRTO14522 1441 aa15.82■□□□□ 0.12
SHMT1-208ENST00000582352 TET3O43151 1660 aa15.82■□□□□ 0.12
SHMT1-208ENST00000582352 SPAG9O60271 1321 aaKnown RBP15.81■□□□□ 0.12
SHMT1-208ENST00000582352 VIRMAQ69YN4 1812 aaKnown RBP15.81■□□□□ 0.12
SHMT1-208ENST00000582352 ZFYVE16Q7Z3T8 1539 aa15.81■□□□□ 0.12
SHMT1-208ENST00000582352 SPINK5Q9NQ38 1064 aaPredicted RBP15.81■□□□□ 0.12
SHMT1-208ENST00000582352 DEPDC5O75140 1603 aa15.8■□□□□ 0.12
SHMT1-208ENST00000582352 ZCCHC11Q5TAX3 1644 aaKnown RBP15.8■□□□□ 0.12
SHMT1-208ENST00000582352 BCAR3O75815 825 aa15.8■□□□□ 0.12
SHMT1-208ENST00000582352 ERCC6L2Q5T890 1561 aa15.8■□□□□ 0.12
SHMT1-208ENST00000582352 SLC24A1O60721 1099 aa15.79■□□□□ 0.12
SHMT1-208ENST00000582352 NGEFQ8N5V2 710 aa15.79■□□□□ 0.12
SHMT1-208ENST00000582352 RTEL1-TNFRSF6BF6WH68 1400 aa15.79■□□□□ 0.12
SHMT1-208ENST00000582352 NINLQ9Y2I6 1382 aa15.78■□□□□ 0.12
SHMT1-208ENST00000582352 CGNL1Q0VF96 1302 aa15.78■□□□□ 0.12
SHMT1-208ENST00000582352 KANK1Q14678 1352 aa15.78■□□□□ 0.12
SHMT1-208ENST00000582352 CANXP27824 592 aaKnown RBP15.78■□□□□ 0.12
SHMT1-208ENST00000582352 ERVK-7P63135 1459 aa15.77■□□□□ 0.11
SHMT1-208ENST00000582352 FRAT1Q92837 279 aaPredicted RBP15.76■□□□□ 0.11
SHMT1-208ENST00000582352 CENPJQ9HC77 1338 aaPredicted RBP15.76■□□□□ 0.11
SHMT1-208ENST00000582352 ABCA6Q8N139 1617 aa15.76■□□□□ 0.11
SHMT1-208ENST00000582352 MAP3K4Q9Y6R4 1608 aa15.76■□□□□ 0.11
SHMT1-208ENST00000582352 NEURL4Q96JN8 1562 aa15.75■□□□□ 0.11
SHMT1-208ENST00000582352 PDE3AQ14432 1141 aa15.75■□□□□ 0.11
SHMT1-208ENST00000582352 BRPF3Q9ULD4 1205 aa15.75■□□□□ 0.11
SHMT1-208ENST00000582352 MAPK8IP3Q9UPT6 1336 aa15.75■□□□□ 0.11
SHMT1-208ENST00000582352 MYOM2P54296 1465 aa15.75■□□□□ 0.11
SHMT1-208ENST00000582352 AFAP1Q8N556 730 aa15.75■□□□□ 0.11
SHMT1-208ENST00000582352 CLUAP1Q96AJ1 413 aa15.74■□□□□ 0.11
SHMT1-208ENST00000582352 FRAT2O75474 233 aaPredicted RBP15.73■□□□□ 0.11
SHMT1-208ENST00000582352 DMRT2Q9Y5R5 561 aa15.73■□□□□ 0.11
SHMT1-208ENST00000582352 ARAP3Q8WWN8 1544 aa15.73■□□□□ 0.11
SHMT1-208ENST00000582352 IGHDP01880 384 aa15.73■□□□□ 0.11
SHMT1-208ENST00000582352 CFAP70Q5T0N1 1121 aa15.73■□□□□ 0.11
SHMT1-208ENST00000582352 ANO8Q9HCE9 1232 aaPredicted RBP15.73■□□□□ 0.11
SHMT1-208ENST00000582352 VWDEQ8N2E2 1590 aa15.72■□□□□ 0.11
SHMT1-208ENST00000582352 ATP7AQ04656 1500 aa15.72■□□□□ 0.11
SHMT1-208ENST00000582352 CARD14Q9BXL6 1004 aa15.72■□□□□ 0.11
SHMT1-208ENST00000582352 POLR3AO14802 1390 aaPredicted RBP15.72■□□□□ 0.11
SHMT1-208ENST00000582352 UHRF1BP1LA0JNW5 1464 aa15.71■□□□□ 0.11
SHMT1-208ENST00000582352 KIF1BO60333 1816 aa15.71■□□□□ 0.11
SHMT1-208ENST00000582352 WWC1Q8IX03 1113 aa15.71■□□□□ 0.11
SHMT1-208ENST00000582352 INO80Q9ULG1 1556 aaPredicted RBP15.71■□□□□ 0.11
SHMT1-208ENST00000582352 COG6Q9Y2V7 657 aa15.7■□□□□ 0.1
SHMT1-208ENST00000582352 MYO3AQ8NEV4 1616 aa15.7■□□□□ 0.1
SHMT1-208ENST00000582352 PANK1Q8TE04 598 aa15.7■□□□□ 0.1
SHMT1-208ENST00000582352 UGGT1Q9NYU2 1555 aa15.7■□□□□ 0.1
SHMT1-208ENST00000582352 ADGRF5Q8IZF2 1346 aa15.69■□□□□ 0.1
SHMT1-208ENST00000582352 BECN1Q14457 450 aa15.69■□□□□ 0.1
SHMT1-208ENST00000582352 IFT172Q9UG01 1749 aa15.69■□□□□ 0.1
SHMT1-208ENST00000582352 KIF3BO15066 747 aa15.69■□□□□ 0.1
SHMT1-208ENST00000582352 SBNO2Q9Y2G9 1366 aa15.68■□□□□ 0.1
SHMT1-208ENST00000582352 USP19O94966 1318 aa15.68■□□□□ 0.1
SHMT1-208ENST00000582352 SHPRHQ149N8 1683 aa15.68■□□□□ 0.1
SHMT1-208ENST00000582352 NSD3Q9BZ95 1437 aa15.67■□□□□ 0.1
SHMT1-208ENST00000582352 NEUROD2Q15784 382 aa15.66■□□□□ 0.1
SHMT1-208ENST00000582352 MORC1Q86VD1 984 aa15.66■□□□□ 0.1
SHMT1-208ENST00000582352 PMFBP1Q8TBY8 1022 aa15.66■□□□□ 0.1
SHMT1-208ENST00000582352 MROH2AA6NES4 1674 aa15.66■□□□□ 0.1
SHMT1-208ENST00000582352 EFCAB6Q5THR3 1501 aa15.66■□□□□ 0.1
SHMT1-208ENST00000582352 AAMPQ13685 434 aa15.65■□□□□ 0.1
SHMT1-208ENST00000582352 MROH1Q8NDA8 1641 aa15.65■□□□□ 0.1
SHMT1-208ENST00000582352 RUNDC1Q96C34 613 aa15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms