RNA–Protein interactions for RNA: ENST00000580542.5

ITGB4-207, Transcript of integrin subunit beta 4, humanhuman

TSL 1 (best)

Gene ITGB4, Length 2,798 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB4-207ENST00000580542 ZBED9Q6R2W3 1325 aa18.13■□□□□ 0.49
ITGB4-207ENST00000580542 RAPGEF3O95398 923 aa18.13■□□□□ 0.49
ITGB4-207ENST00000580542 KIF7Q2M1P5 1343 aa18.12■□□□□ 0.49
ITGB4-207ENST00000580542 POLR1AO95602 1720 aaPredicted RBP18.12■□□□□ 0.49
ITGB4-207ENST00000580542 PTPRTO14522 1441 aa18.12■□□□□ 0.49
ITGB4-207ENST00000580542 MRS2Q9HD23 443 aa18.12■□□□□ 0.49
ITGB4-207ENST00000580542 SPHKAPQ2M3C7 1700 aa18.11■□□□□ 0.49
ITGB4-207ENST00000580542 EFCAB6Q5THR3 1501 aa18.11■□□□□ 0.49
ITGB4-207ENST00000580542 TRPM2O94759 1503 aa18.1■□□□□ 0.49
ITGB4-207ENST00000580542 A0A0U1RQG5 324 aaPredicted RBP18.1■□□□□ 0.49
ITGB4-207ENST00000580542 DCAF11Q8TEB1 546 aa18.1■□□□□ 0.49
ITGB4-207ENST00000580542 PDE4AP27815 886 aa18.1■□□□□ 0.49
ITGB4-207ENST00000580542 YEATS2Q9ULM3 1422 aa18.09■□□□□ 0.49
ITGB4-207ENST00000580542 RRP9O43818 475 aaKnown RBP18.09■□□□□ 0.49
ITGB4-207ENST00000580542 NAP1L5Q96NT1 182 aaPredicted RBP18.08■□□□□ 0.49
ITGB4-207ENST00000580542 NEURL4Q96JN8 1562 aa18.08■□□□□ 0.49
ITGB4-207ENST00000580542 CEP152O94986 1710 aa18.08■□□□□ 0.49
ITGB4-207ENST00000580542 ZC3H13Q5T200 1668 aaKnown RBP18.08■□□□□ 0.49
ITGB4-207ENST00000580542 KANK1Q14678 1352 aa18.08■□□□□ 0.49
ITGB4-207ENST00000580542 HSP90AA1P07900 732 aaKnown RBP18.08■□□□□ 0.48
ITGB4-207ENST00000580542 COL17A1Q9UMD9 1497 aaPredicted RBP18.07■□□□□ 0.48
ITGB4-207ENST00000580542 AGLP35573 1532 aa18.07■□□□□ 0.48
ITGB4-207ENST00000580542 KIF3BO15066 747 aa18.07■□□□□ 0.48
ITGB4-207ENST00000580542 DDRGK1Q96HY6 314 aa18.07■□□□□ 0.48
ITGB4-207ENST00000580542 UHRF1BP1Q6BDS2 1440 aa18.06■□□□□ 0.48
ITGB4-207ENST00000580542 TCERG1O14776 1098 aaKnown RBP18.06■□□□□ 0.48
ITGB4-207ENST00000580542 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.06■□□□□ 0.48
ITGB4-207ENST00000580542 ARHGEF40Q8TER5 1519 aa18.05■□□□□ 0.48
ITGB4-207ENST00000580542 CCDC144AA2RUR9 1427 aa18.04■□□□□ 0.48
ITGB4-207ENST00000580542 ABCC3O15438 1527 aa18.04■□□□□ 0.48
ITGB4-207ENST00000580542 RRAGDQ9NQL2 400 aaPredicted RBP18.04■□□□□ 0.48
ITGB4-207ENST00000580542 BACH2Q9BYV9 841 aa18.03■□□□□ 0.48
ITGB4-207ENST00000580542 CAMSAP1Q5T5Y3 1602 aa18.02■□□□□ 0.48
ITGB4-207ENST00000580542 CLTCL1P53675 1640 aa18.01■□□□□ 0.47
ITGB4-207ENST00000580542 SIGLEC1Q9BZZ2 1709 aa18.01■□□□□ 0.47
ITGB4-207ENST00000580542 DNAJC5Q9H3Z4 198 aa18.01■□□□□ 0.47
ITGB4-207ENST00000580542 RBM10P98175 930 aaKnown RBP18■□□□□ 0.47
ITGB4-207ENST00000580542 ARHGAP31Q2M1Z3 1444 aa17.99■□□□□ 0.47
ITGB4-207ENST00000580542 SLC4A3P48751 1232 aa17.99■□□□□ 0.47
ITGB4-207ENST00000580542 PNNQ9H307 717 aaKnown RBP17.97■□□□□ 0.47
ITGB4-207ENST00000580542 USP47Q96K76 1375 aa17.96■□□□□ 0.47
ITGB4-207ENST00000580542 NPATQ14207 1427 aa17.96■□□□□ 0.47
ITGB4-207ENST00000580542 SMG6Q86US8 1419 aaKnown RBP17.96■□□□□ 0.47
ITGB4-207ENST00000580542 NUDCQ9Y266 331 aa17.96■□□□□ 0.46
ITGB4-207ENST00000580542 RALGAPBQ86X10 1494 aa17.95■□□□□ 0.46
ITGB4-207ENST00000580542 FRAT2O75474 233 aaPredicted RBP17.95■□□□□ 0.46
ITGB4-207ENST00000580542 PIK3C2BO00750 1634 aa17.94■□□□□ 0.46
ITGB4-207ENST00000580542 RNF123Q5XPI4 1314 aa17.94■□□□□ 0.46
ITGB4-207ENST00000580542 MS4A1P11836 297 aa17.93■□□□□ 0.46
ITGB4-207ENST00000580542 NOS1P29475 1434 aa17.93■□□□□ 0.46
ITGB4-207ENST00000580542 TRPM1Q7Z4N2 1603 aa17.92■□□□□ 0.46
ITGB4-207ENST00000580542 KIF1BO60333 1816 aa17.92■□□□□ 0.46
ITGB4-207ENST00000580542 IFT172Q9UG01 1749 aa17.92■□□□□ 0.46
ITGB4-207ENST00000580542 AAMPQ13685 434 aa17.91■□□□□ 0.46
ITGB4-207ENST00000580542 LAMC1P11047 1609 aa17.91■□□□□ 0.46
ITGB4-207ENST00000580542 ZNF326Q5BKZ1 582 aaKnown RBP17.91■□□□□ 0.46
ITGB4-207ENST00000580542 PPP6R1Q9UPN7 881 aa17.91■□□□□ 0.46
ITGB4-207ENST00000580542 PRAG1Q86YV5 1406 aa17.91■□□□□ 0.46
ITGB4-207ENST00000580542 FGD1P98174 961 aa17.9■□□□□ 0.46
ITGB4-207ENST00000580542 ADGRB3O60242 1522 aa17.89■□□□□ 0.45
ITGB4-207ENST00000580542 CNGB1Q14028 1251 aaPredicted RBP17.89■□□□□ 0.45
ITGB4-207ENST00000580542 POLR3GLQ9BT43 218 aa17.89■□□□□ 0.45
ITGB4-207ENST00000580542 SYNMO15061 1565 aa17.89■□□□□ 0.45
ITGB4-207ENST00000580542 MROH2AA6NES4 1674 aa17.88■□□□□ 0.45
ITGB4-207ENST00000580542 GGT6Q6P531 493 aa17.88■□□□□ 0.45
ITGB4-207ENST00000580542 MADDQ8WXG6 1647 aa17.88■□□□□ 0.45
ITGB4-207ENST00000580542 UGGT1Q9NYU2 1555 aa17.88■□□□□ 0.45
ITGB4-207ENST00000580542 PREX1Q8TCU6 1659 aa17.88■□□□□ 0.45
ITGB4-207ENST00000580542 ARID4BQ4LE39 1312 aaPredicted RBP17.88■□□□□ 0.45
ITGB4-207ENST00000580542 STAC3Q96MF2 364 aa17.86■□□□□ 0.45
ITGB4-207ENST00000580542 GPRASP1Q5JY77 1395 aa17.85■□□□□ 0.45
ITGB4-207ENST00000580542 KIAA1210Q9ULL0 1709 aa17.85■□□□□ 0.45
ITGB4-207ENST00000580542 PDE4CQ08493 712 aa17.85■□□□□ 0.45
ITGB4-207ENST00000580542 MYOM2P54296 1465 aa17.84■□□□□ 0.45
ITGB4-207ENST00000580542 CLTCQ00610 1675 aaKnown RBP17.84■□□□□ 0.45
ITGB4-207ENST00000580542 L1TD1Q5T7N2 865 aaKnown RBP17.83■□□□□ 0.45
ITGB4-207ENST00000580542 EXOC6Q8TAG9 804 aa17.83■□□□□ 0.45
ITGB4-207ENST00000580542 PNISRQ8TF01 805 aaKnown RBP17.83■□□□□ 0.44
ITGB4-207ENST00000580542 ROCK2O75116 1388 aaKnown RBP17.83■□□□□ 0.44
ITGB4-207ENST00000580542 NRXN1Q9ULB1 1477 aa17.82■□□□□ 0.44
ITGB4-207ENST00000580542 SENP3-EIF4A1A0A087X0R7 540 aa17.82■□□□□ 0.44
ITGB4-207ENST00000580542 PPLO60437 1756 aa17.82■□□□□ 0.44
ITGB4-207ENST00000580542 CLCN1P35523 988 aa17.81■□□□□ 0.44
ITGB4-207ENST00000580542 CFAP65Q6ZU64 1925 aaKnown RBP17.81■□□□□ 0.44
ITGB4-207ENST00000580542 SPATA31D1Q6ZQQ2 1576 aa17.8■□□□□ 0.44
ITGB4-207ENST00000580542 ARXQ96QS3 562 aa17.79■□□□□ 0.44
ITGB4-207ENST00000580542 POGKQ9P215 609 aa17.79■□□□□ 0.44
ITGB4-207ENST00000580542 CARD11Q9BXL7 1154 aa17.79■□□□□ 0.44
ITGB4-207ENST00000580542 ERVK-7P63135 1459 aa17.78■□□□□ 0.44
ITGB4-207ENST00000580542 TMC1Q8TDI8 760 aa17.77■□□□□ 0.43
ITGB4-207ENST00000580542 LRPPRCP42704 1394 aaKnown RBP17.77■□□□□ 0.43
ITGB4-207ENST00000580542 RGL3Q3MIN7 710 aa17.76■□□□□ 0.43
ITGB4-207ENST00000580542 TMEM131LA2VDJ0 1609 aa17.76■□□□□ 0.43
ITGB4-207ENST00000580542 IQGAP1P46940 1657 aa17.75■□□□□ 0.43
ITGB4-207ENST00000580542 ST20-MTHFSA0A0A6YYL1 179 aa17.74■□□□□ 0.43
ITGB4-207ENST00000580542 RRP1P56182 461 aaKnown RBP17.74■□□□□ 0.43
ITGB4-207ENST00000580542 RGS3P49796 1198 aa17.74■□□□□ 0.43
ITGB4-207ENST00000580542 CALD1Q05682 793 aaKnown RBP17.74■□□□□ 0.43
ITGB4-207ENST00000580542 KDM2AQ9Y2K7 1162 aa17.74■□□□□ 0.43
ITGB4-207ENST00000580542 SKAP1Q86WV1 359 aa17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms