RNA–Protein interactions for RNA: ENST00000580158.1

KPNB1-209, Transcript of karyopherin subunit beta 1, human

TSL 2

Gene KPNB1, Length 603 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
KPNB1-209	ENST00000580158	ITSN2	Q9NZM3	1697 aa		10.17	□□□□□ -0.78
KPNB1-209	ENST00000580158	VASP	P50552	380 aa	Predicted RBP	10.16	□□□□□ -0.78
KPNB1-209	ENST00000580158	ATP1B4	Q9UN42	357 aa	Predicted RBP	10.16	□□□□□ -0.78
KPNB1-209	ENST00000580158	SYNM	O15061	1565 aa		10.16	□□□□□ -0.78
KPNB1-209	ENST00000580158	GSE1	Q14687	1217 aa		10.15	□□□□□ -0.78
KPNB1-209	ENST00000580158	STRCP1	A6NGW2	1772 aa		10.14	□□□□□ -0.79
KPNB1-209	ENST00000580158	LRRC7	Q96NW7	1537 aa		10.14	□□□□□ -0.79
KPNB1-209	ENST00000580158	PLCG2	P16885	1265 aa		10.14	□□□□□ -0.79
KPNB1-209	ENST00000580158	GGT6	Q6P531	493 aa		10.14	□□□□□ -0.79
KPNB1-209	ENST00000580158	PCDH10	Q9P2E7	1040 aa		10.14	□□□□□ -0.79
KPNB1-209	ENST00000580158	IQGAP1	P46940	1657 aa		10.13	□□□□□ -0.79
KPNB1-209	ENST00000580158	THEMIS	Q8N1K5	641 aa	Predicted RBP	10.13	□□□□□ -0.79
KPNB1-209	ENST00000580158	CLIP1	P30622	1438 aa		10.13	□□□□□ -0.79
KPNB1-209	ENST00000580158	ABCC1	P33527	1531 aa		10.12	□□□□□ -0.79
KPNB1-209	ENST00000580158	DEPDC5	O75140	1603 aa		10.12	□□□□□ -0.79
KPNB1-209	ENST00000580158	PCDHB8	Q9UN66	801 aa		10.12	□□□□□ -0.79
KPNB1-209	ENST00000580158	NPHP4	O75161	1426 aa	Predicted RBP	10.12	□□□□□ -0.79
KPNB1-209	ENST00000580158	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	10.11	□□□□□ -0.79
KPNB1-209	ENST00000580158	PREX2	Q70Z35	1606 aa		10.11	□□□□□ -0.79
KPNB1-209	ENST00000580158	MED14	O60244	1454 aa		10.1	□□□□□ -0.79
KPNB1-209	ENST00000580158	TRIM52	Q96A61	297 aa		10.1	□□□□□ -0.79
KPNB1-209	ENST00000580158	TRO	Q12816	1431 aa	Predicted RBP	10.09	□□□□□ -0.79
KPNB1-209	ENST00000580158	SPAG9	O60271	1321 aa	Known RBP	10.08	□□□□□ -0.8
KPNB1-209	ENST00000580158	FAM135B	Q49AJ0	1406 aa		10.08	□□□□□ -0.8
KPNB1-209	ENST00000580158	FAM135A	Q9P2D6	1515 aa		10.08	□□□□□ -0.8
KPNB1-209	ENST00000580158	XIRP1	Q702N8	1843 aa	Known RBP	10.08	□□□□□ -0.8
KPNB1-209	ENST00000580158	IRX5	P78411	483 aa	Predicted RBP	10.08	□□□□□ -0.8
KPNB1-209	ENST00000580158	ZNF772	Q68DY9	489 aa	Predicted RBP	10.08	□□□□□ -0.8
KPNB1-209	ENST00000580158	OCEL1	Q9H607	264 aa		10.08	□□□□□ -0.8
KPNB1-209	ENST00000580158	TNR	Q92752	1358 aa		10.08	□□□□□ -0.8
KPNB1-209	ENST00000580158	SAMD9L	Q8IVG5	1584 aa		10.08	□□□□□ -0.8
KPNB1-209	ENST00000580158	UGGT1	Q9NYU2	1555 aa		10.07	□□□□□ -0.8
KPNB1-209	ENST00000580158	A2M	P01023	1474 aa		10.07	□□□□□ -0.8
KPNB1-209	ENST00000580158	ZNF467	Q7Z7K2	595 aa	Predicted RBP	10.07	□□□□□ -0.8
KPNB1-209	ENST00000580158	SLAIN1	Q8ND83	568 aa		10.07	□□□□□ -0.8
KPNB1-209	ENST00000580158	LCE2D	Q5TA82	110 aa	Predicted RBP	10.06	□□□□□ -0.8
KPNB1-209	ENST00000580158	CDC42BPA	Q5VT25	1732 aa		10.06	□□□□□ -0.8
KPNB1-209	ENST00000580158	ADGB	Q8N7X0	1667 aa		10.06	□□□□□ -0.8
KPNB1-209	ENST00000580158	ROBO1	Q9Y6N7	1651 aa		10.06	□□□□□ -0.8
KPNB1-209	ENST00000580158	PLXNC1	O60486	1568 aa		10.05	□□□□□ -0.8
KPNB1-209	ENST00000580158	MEX3C	Q5U5Q3	659 aa	Known RBP	10.05	□□□□□ -0.8
KPNB1-209	ENST00000580158	ZNF777	Q9ULD5	760 aa	Predicted RBP	10.05	□□□□□ -0.8
KPNB1-209	ENST00000580158	ATP7A	Q04656	1500 aa		10.05	□□□□□ -0.8
KPNB1-209	ENST00000580158	PHLPP1	O60346	1717 aa		10.04	□□□□□ -0.8
KPNB1-209	ENST00000580158	CHRM1	P11229	460 aa	Predicted RBP	10.04	□□□□□ -0.8
KPNB1-209	ENST00000580158	RXRB	P28702	533 aa		10.04	□□□□□ -0.8
KPNB1-209	ENST00000580158	GOLGA2	Q08379	1002 aa		10.04	□□□□□ -0.8
KPNB1-209	ENST00000580158	FBXO31	Q5XUX0	539 aa	Predicted RBP	10.04	□□□□□ -0.8
KPNB1-209	ENST00000580158	FMN1	Q68DA7	1419 aa		10.04	□□□□□ -0.8
KPNB1-209	ENST00000580158	NLRP1	Q9C000	1473 aa		10.04	□□□□□ -0.8
KPNB1-209	ENST00000580158	JCAD	Q9P266	1359 aa		10.02	□□□□□ -0.8
KPNB1-209	ENST00000580158	ZC3H13	Q5T200	1668 aa	Known RBP	10.02	□□□□□ -0.81
KPNB1-209	ENST00000580158	HNRNPM	P52272	730 aa	Known RBP eCLIP	10.01	□□□□□ -0.81
KPNB1-209	ENST00000580158	PZP	P20742	1482 aa		10.01	□□□□□ -0.81
KPNB1-209	ENST00000580158	SYCP2	Q9BX26	1530 aa		10.01	□□□□□ -0.81
KPNB1-209	ENST00000580158	KDM5D	Q9BY66	1539 aa		10.01	□□□□□ -0.81
KPNB1-209	ENST00000580158	INO80	Q9ULG1	1556 aa	Predicted RBP	10.01	□□□□□ -0.81
KPNB1-209	ENST00000580158	MIA2	Q96PC5	1412 aa		10	□□□□□ -0.81
KPNB1-209	ENST00000580158	LRRIQ1	Q96JM4	1722 aa		10	□□□□□ -0.81
KPNB1-209	ENST00000580158	MKRN3	Q13064	507 aa	Known RBP	10	□□□□□ -0.81
KPNB1-209	ENST00000580158	SPOCK2	Q92563	424 aa		10	□□□□□ -0.81
KPNB1-209	ENST00000580158	LRRC9	Q6ZRR7	1453 aa		9.99	□□□□□ -0.81
KPNB1-209	ENST00000580158	CDK12	Q9NYV4	1490 aa	Predicted RBP	9.99	□□□□□ -0.81
KPNB1-209	ENST00000580158	CFAP65	Q6ZU64	1925 aa	Known RBP	9.99	□□□□□ -0.81
KPNB1-209	ENST00000580158	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	9.98	□□□□□ -0.81
KPNB1-209	ENST00000580158	CIZ1	Q9ULV3	898 aa	Predicted RBP	9.98	□□□□□ -0.81
KPNB1-209	ENST00000580158	SPATA31A6	Q5VVP1	1343 aa		9.98	□□□□□ -0.81
KPNB1-209	ENST00000580158	WASHC2C	Q9Y4E1	1318 aa		9.98	□□□□□ -0.81
KPNB1-209	ENST00000580158	PSEN1	P49768	467 aa		9.97	□□□□□ -0.81
KPNB1-209	ENST00000580158	PLEKHH2	Q8IVE3	1493 aa		9.97	□□□□□ -0.81
KPNB1-209	ENST00000580158	IFNLR1	Q8IU57	520 aa	Predicted RBP	9.96	□□□□□ -0.82
KPNB1-209	ENST00000580158	SRCAP	Q6ZRS2	3230 aa		9.95	□□□□□ -0.82
KPNB1-209	ENST00000580158	NUTM2B	A6NNL0	878 aa	Predicted RBP	9.95	□□□□□ -0.82
KPNB1-209	ENST00000580158	NUTM2E	B1AL46	878 aa	Predicted RBP	9.95	□□□□□ -0.82
KPNB1-209	ENST00000580158	KIF3B	O15066	747 aa		9.95	□□□□□ -0.82
KPNB1-209	ENST00000580158	NUTM2D	Q5VT03	806 aa	Predicted RBP	9.95	□□□□□ -0.82
KPNB1-209	ENST00000580158	NUTM2A	Q8IVF1	878 aa	Predicted RBP	9.95	□□□□□ -0.82
KPNB1-209	ENST00000580158	KIAA1107	Q9UPP5	1409 aa		9.95	□□□□□ -0.82
KPNB1-209	ENST00000580158	SCAF11	Q99590	1463 aa	Known RBP	9.94	□□□□□ -0.82
KPNB1-209	ENST00000580158	TMEM94	Q12767	1356 aa		9.94	□□□□□ -0.82
KPNB1-209	ENST00000580158	SNPH	O15079	494 aa		9.94	□□□□□ -0.82
KPNB1-209	ENST00000580158	ST18	O60284	1047 aa		9.94	□□□□□ -0.82
KPNB1-209	ENST00000580158	TXNDC2	Q86VQ3	553 aa		9.94	□□□□□ -0.82
KPNB1-209	ENST00000580158	PROSER2	Q86WR7	435 aa	Predicted RBP	9.94	□□□□□ -0.82
KPNB1-209	ENST00000580158	L3MBTL3	Q96JM7	780 aa	Predicted RBP	9.94	□□□□□ -0.82
KPNB1-209	ENST00000580158	UBR1	Q8IWV7	1749 aa		9.93	□□□□□ -0.82
KPNB1-209	ENST00000580158	FGD6	Q6ZV73	1430 aa		9.93	□□□□□ -0.82
KPNB1-209	ENST00000580158	DHX29	Q7Z478	1369 aa	Known RBP	9.93	□□□□□ -0.82
KPNB1-209	ENST00000580158	RBM33	Q96EV2	1170 aa	Known RBP	9.93	□□□□□ -0.82
KPNB1-209	ENST00000580158	SLAIN2	Q9P270	581 aa		9.93	□□□□□ -0.82
KPNB1-209	ENST00000580158	EID1	Q9Y6B2	187 aa		9.93	□□□□□ -0.82
KPNB1-209	ENST00000580158	LRP6	O75581	1613 aa		9.93	□□□□□ -0.82
KPNB1-209	ENST00000580158	CCDC18	Q5T9S5	1454 aa		9.92	□□□□□ -0.82
KPNB1-209	ENST00000580158	MSH6	P52701	1360 aa		9.92	□□□□□ -0.82
KPNB1-209	ENST00000580158	PDAP1	Q13442	181 aa	Known RBP	9.92	□□□□□ -0.82
KPNB1-209	ENST00000580158	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	9.92	□□□□□ -0.82	3e-6	■□□□□ 9
KPNB1-209	ENST00000580158	CFDP1	Q9UEE9	299 aa	Predicted RBP	9.92	□□□□□ -0.82
KPNB1-209	ENST00000580158	SHPRH	Q149N8	1683 aa		9.92	□□□□□ -0.82
KPNB1-209	ENST00000580158	COL16A1	Q07092	1604 aa	Predicted RBP	9.92	□□□□□ -0.82
KPNB1-209	ENST00000580158	CDAN1	Q8IWY9	1227 aa		9.91	□□□□□ -0.82

Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms