RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 NLRP7Q8WX94 980 aa14.66□□□□□ -0.06
SS18-214ENST00000580003 SOWAHBA6NEL2 793 aa14.65□□□□□ -0.06
SS18-214ENST00000580003 TRIM66O15016 1216 aa14.65□□□□□ -0.06
SS18-214ENST00000580003 RNF40O75150 1001 aa14.64□□□□□ -0.07
SS18-214ENST00000580003 BCAMP50895 628 aa14.64□□□□□ -0.07
SS18-214ENST00000580003 THSD4Q6ZMP0 1018 aa14.64□□□□□ -0.07
SS18-214ENST00000580003 SLF2Q8IX21 1173 aa14.64□□□□□ -0.07
SS18-214ENST00000580003 MDM2Q00987 491 aaPredicted RBP14.63□□□□□ -0.07
SS18-214ENST00000580003 DAXXQ9UER7 740 aaPredicted RBP14.63□□□□□ -0.07
SS18-214ENST00000580003 CLCN1P35523 988 aa14.62□□□□□ -0.07
SS18-214ENST00000580003 AMHR2Q16671 573 aa14.62□□□□□ -0.07
SS18-214ENST00000580003 TTLL12Q14166 644 aaPredicted RBP14.61□□□□□ -0.07
SS18-214ENST00000580003 NECTIN2Q92692 538 aa14.59□□□□□ -0.07
SS18-214ENST00000580003 GPCPD1Q9NPB8 672 aa14.59□□□□□ -0.07
SS18-214ENST00000580003 HPS5Q9UPZ3 1129 aa14.59□□□□□ -0.07
SS18-214ENST00000580003 PTPN5P54829 565 aa14.58□□□□□ -0.08
SS18-214ENST00000580003 RSPH4AQ5TD94 716 aa14.58□□□□□ -0.08
SS18-214ENST00000580003 TSR3Q9UJK0 312 aaKnown RBP14.58□□□□□ -0.08
SS18-214ENST00000580003 PPP4CP60510 307 aa14.57□□□□□ -0.08
SS18-214ENST00000580003 PDE4DQ08499 809 aa14.57□□□□□ -0.08
SS18-214ENST00000580003 SULF1Q8IWU6 871 aa14.57□□□□□ -0.08
SS18-214ENST00000580003 DDX11L8A8MPP1 907 aa14.55□□□□□ -0.08
SS18-214ENST00000580003 PLSCR2Q9NRY7 297 aa14.55□□□□□ -0.08
SS18-214ENST00000580003 HCSTQ9UBK5 93 aa14.55□□□□□ -0.08
SS18-214ENST00000580003 RDH13Q8NBN7 331 aa14.53□□□□□ -0.08
SS18-214ENST00000580003 WBP1LQ9NX94 342 aa14.52□□□□□ -0.09
SS18-214ENST00000580003 PARP9Q8IXQ6 854 aa14.51□□□□□ -0.09
SS18-214ENST00000580003 TMUB1Q9BVT8 246 aa14.51□□□□□ -0.09
SS18-214ENST00000580003 GIGYF2Q6Y7W6 1299 aaKnown RBP14.5□□□□□ -0.09
SS18-214ENST00000580003 REPIN1Q9BWE0 567 aaKnown RBP14.5□□□□□ -0.09
SS18-214ENST00000580003 NYAP1Q6ZVC0 841 aa14.49□□□□□ -0.09
SS18-214ENST00000580003 FAM217BQ9NTX9 383 aaPredicted RBP14.49□□□□□ -0.09
SS18-214ENST00000580003 SLC10A3P09131 477 aa14.48□□□□□ -0.09
SS18-214ENST00000580003 SSTR3P32745 418 aaPredicted RBP14.47□□□□□ -0.09
SS18-214ENST00000580003 PRR14Q9BWN1 585 aa14.47□□□□□ -0.09
SS18-214ENST00000580003 KMT5BQ4FZB7 885 aa14.46□□□□□ -0.09
SS18-214ENST00000580003 CFHP08603 1231 aa14.45□□□□□ -0.1
SS18-214ENST00000580003 CD46P15529 392 aa14.44□□□□□ -0.1
SS18-214ENST00000580003 NEUROD2Q15784 382 aa14.43□□□□□ -0.1
SS18-214ENST00000580003 APLP1P51693 650 aa14.41□□□□□ -0.1
SS18-214ENST00000580003 GPBP1L1Q9HC44 474 aaPredicted RBP14.41□□□□□ -0.1
SS18-214ENST00000580003 GCGRP47871 477 aa14.39□□□□□ -0.11
SS18-214ENST00000580003 KDM4CQ9H3R0 1056 aa14.39□□□□□ -0.11
SS18-214ENST00000580003 ACTN4O43707 911 aaKnown RBP14.37□□□□□ -0.11
SS18-214ENST00000580003 MS4A1P11836 297 aa14.37□□□□□ -0.11
SS18-214ENST00000580003 BEGAINQ9BUH8 593 aa14.36□□□□□ -0.11
SS18-214ENST00000580003 BRPF1P55201 1214 aaPredicted RBP14.35□□□□□ -0.11
SS18-214ENST00000580003 NUTM1Q86Y26 1132 aa14.35□□□□□ -0.11
SS18-214ENST00000580003 PCDHB3Q9Y5E6 796 aa14.34□□□□□ -0.11
SS18-214ENST00000580003 KDM4AO75164 1064 aa14.33□□□□□ -0.12
SS18-214ENST00000580003 GRIPAP1Q4V328 841 aa14.32□□□□□ -0.12
SS18-214ENST00000580003 USP46P62068 366 aa14.31□□□□□ -0.12
SS18-214ENST00000580003 FUT2Q10981 343 aa14.3□□□□□ -0.12
SS18-214ENST00000580003 ATP6V1AP38606 617 aa14.29□□□□□ -0.12
SS18-214ENST00000580003 DIXDC1Q155Q3 683 aa14.28□□□□□ -0.12
SS18-214ENST00000580003 DDRGK1Q96HY6 314 aa14.28□□□□□ -0.12
SS18-214ENST00000580003 COPS2P61201 443 aa14.27□□□□□ -0.13
SS18-214ENST00000580003 MTRQ99707 1265 aa14.27□□□□□ -0.13
SS18-214ENST00000580003 PUS10Q3MIT2 529 aaKnown RBP14.26□□□□□ -0.13
SS18-214ENST00000580003 BLOC1S3Q6QNY0 202 aa14.26□□□□□ -0.13
SS18-214ENST00000580003 SPIRE2Q8WWL2 714 aa14.26□□□□□ -0.13
SS18-214ENST00000580003 IL21Q9HBE4 155 aa14.26□□□□□ -0.13
SS18-214ENST00000580003 NR1I2O75469 434 aa14.25□□□□□ -0.13
SS18-214ENST00000580003 FAM117AQ9C073 453 aa14.25□□□□□ -0.13
SS18-214ENST00000580003 TBC1D2Q9BYX2 928 aa14.24□□□□□ -0.13
SS18-214ENST00000580003 HOXA2O43364 376 aa14.23□□□□□ -0.13
SS18-214ENST00000580003 TJAP1Q5JTD0 557 aa14.23□□□□□ -0.13
SS18-214ENST00000580003 KCNC4Q03721 635 aa14.22□□□□□ -0.13
SS18-214ENST00000580003 MORN1Q5T089 497 aa14.22□□□□□ -0.13
SS18-214ENST00000580003 ITGBL1O95965 494 aaPredicted RBP14.21□□□□□ -0.13
SS18-214ENST00000580003 RSPH6AQ9H0K4 717 aa14.21□□□□□ -0.13
SS18-214ENST00000580003 IL27Q8NEV9 243 aa14.19□□□□□ -0.14
SS18-214ENST00000580003 PLA2G2EQ9NZK7 142 aa14.19□□□□□ -0.14
SS18-214ENST00000580003 ZPR1O75312 459 aa14.18□□□□□ -0.14
SS18-214ENST00000580003 SCUBE3Q8IX30 993 aa14.18□□□□□ -0.14
SS18-214ENST00000580003 SLC27A5Q9Y2P5 690 aa14.18□□□□□ -0.14
SS18-214ENST00000580003 ZNF516Q92618 1163 aa14.17□□□□□ -0.14
SS18-214ENST00000580003 PLEKHG3A1L390 1219 aa14.16□□□□□ -0.14
SS18-214ENST00000580003 MOXD2PA6NHM9 499 aa14.16□□□□□ -0.14
SS18-214ENST00000580003 Q3C1V9 767 aa14.16□□□□□ -0.14
SS18-214ENST00000580003 FDX1P10109 184 aa14.15□□□□□ -0.14
SS18-214ENST00000580003 NDUFV2P19404 249 aa14.15□□□□□ -0.14
SS18-214ENST00000580003 MYSM1Q5VVJ2 828 aa14.15□□□□□ -0.14
SS18-214ENST00000580003 HLA-CQ95604 372 aa14.15□□□□□ -0.14
SS18-214ENST00000580003 GUCA2AQ02747 115 aa14.14□□□□□ -0.15
SS18-214ENST00000580003 RIC3Q7Z5B4 369 aa14.13□□□□□ -0.15
SS18-214ENST00000580003 FMNL1O95466 1100 aaPredicted RBP14.12□□□□□ -0.15
SS18-214ENST00000580003 GJA5P36382 358 aa14.12□□□□□ -0.15
SS18-214ENST00000580003 RSBN1LQ6PCB5 846 aaPredicted RBP14.12□□□□□ -0.15
SS18-214ENST00000580003 SPTLC1O15269 473 aa14.11□□□□□ -0.15
SS18-214ENST00000580003 SH3D19Q5HYK7 790 aa14.11□□□□□ -0.15
SS18-214ENST00000580003 ATP1B4Q9UN42 357 aaPredicted RBP14.11□□□□□ -0.15
SS18-214ENST00000580003 SALL2Q9Y467 1007 aaPredicted RBP14.11□□□□□ -0.15
SS18-214ENST00000580003 IFFO2Q5TF58 517 aa14.1□□□□□ -0.15
SS18-214ENST00000580003 POLR3EQ9NVU0 708 aa14.1□□□□□ -0.15
SS18-214ENST00000580003 TLL1O43897 1013 aa14.09□□□□□ -0.15
SS18-214ENST00000580003 CLK2P49760 499 aaKnown RBP14.09□□□□□ -0.15
SS18-214ENST00000580003 SKIV2LQ15477 1246 aaKnown RBP14.09□□□□□ -0.15
SS18-214ENST00000580003 SPSB2Q99619 263 aa14.09□□□□□ -0.15
SS18-214ENST00000580003 ADH1BP00325 375 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms