RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 NUTM2DQ5VT03 806 aaPredicted RBP15.24■□□□□ 0.03
SS18-207ENST00000577636 PTPN23Q9H3S7 1636 aa15.24■□□□□ 0.03
SS18-207ENST00000577636 HDGFP51858 240 aaKnown RBP15.23■□□□□ 0.03
SS18-207ENST00000577636 FAM50AQ14320 339 aaKnown RBP15.23■□□□□ 0.03
SS18-207ENST00000577636 JCADQ9P266 1359 aa15.23■□□□□ 0.03
SS18-207ENST00000577636 TET3O43151 1660 aa15.22■□□□□ 0.03
SS18-207ENST00000577636 TRIM52Q96A61 297 aa15.21■□□□□ 0.03
SS18-207ENST00000577636 NOS1P29475 1434 aa15.2■□□□□ 0.02
SS18-207ENST00000577636 FGD6Q6ZV73 1430 aa15.19■□□□□ 0.02
SS18-207ENST00000577636 LMTK2Q8IWU2 1503 aa15.18■□□□□ 0.02
SS18-207ENST00000577636 ATF3P18847 181 aa15.18■□□□□ 0.02
SS18-207ENST00000577636 NKTRP30414 1462 aaKnown RBP15.18■□□□□ 0.02
SS18-207ENST00000577636 CROCC2H7BZ55 1655 aa15.18■□□□□ 0.02
SS18-207ENST00000577636 RIMS2Q9UQ26 1411 aa15.17■□□□□ 0.02
SS18-207ENST00000577636 ADGRB3O60242 1522 aa15.17■□□□□ 0.02
SS18-207ENST00000577636 PHLPP1O60346 1717 aa15.17■□□□□ 0.02
SS18-207ENST00000577636 PLEKHG1Q9ULL1 1385 aa15.17■□□□□ 0.02
SS18-207ENST00000577636 NUTM2BA6NNL0 878 aaPredicted RBP15.17■□□□□ 0.02
SS18-207ENST00000577636 NUTM2EB1AL46 878 aaPredicted RBP15.17■□□□□ 0.02
SS18-207ENST00000577636 NUTM2AQ8IVF1 878 aaPredicted RBP15.17■□□□□ 0.02
SS18-207ENST00000577636 TBX22Q9Y458 520 aa15.17■□□□□ 0.02
SS18-207ENST00000577636 ZNF772Q68DY9 489 aaPredicted RBP15.16■□□□□ 0.02
SS18-207ENST00000577636 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.16■□□□□ 0.02
SS18-207ENST00000577636 CADPS2Q86UW7 1296 aa15.15■□□□□ 0.02
SS18-207ENST00000577636 KDM5AP29375 1690 aaKnown RBP15.14■□□□□ 0.01
SS18-207ENST00000577636 UPF1Q92900 1129 aaKnown RBP eCLIP15.14■□□□□ 0.01
SS18-207ENST00000577636 C19orf44Q9H6X5 657 aa15.14■□□□□ 0.01
SS18-207ENST00000577636 SETD1AO15047 1707 aaKnown RBP15.14■□□□□ 0.01
SS18-207ENST00000577636 SPATA31A6Q5VVP1 1343 aa15.14■□□□□ 0.01
SS18-207ENST00000577636 NWD1Q149M9 1564 aa15.13■□□□□ 0.01
SS18-207ENST00000577636 ANKRD50Q9ULJ7 1429 aa15.13■□□□□ 0.01
SS18-207ENST00000577636 ZFYVE9O95405 1425 aa15.12■□□□□ 0.01
SS18-207ENST00000577636 RXRBP28702 533 aa15.12■□□□□ 0.01
SS18-207ENST00000577636 AMOTL2Q9Y2J4 779 aa15.12■□□□□ 0.01
SS18-207ENST00000577636 LRP6O75581 1613 aa15.1■□□□□ 0.01
SS18-207ENST00000577636 HRCP23327 699 aa15.1■□□□□ 0.01
SS18-207ENST00000577636 RRBP1Q9P2E9 1410 aaKnown RBP15.09■□□□□ 0.01
SS18-207ENST00000577636 BRINP3Q76B58 766 aa15.09■□□□□ 0.01
SS18-207ENST00000577636 NCOA3Q9Y6Q9 1424 aa15.09■□□□□ 0.01
SS18-207ENST00000577636 RPRD2Q5VT52 1461 aaKnown RBP15.08■□□□□ 0.01
SS18-207ENST00000577636 CHD2O14647 1828 aaKnown RBP15.08■□□□□ 0.01
SS18-207ENST00000577636 ZEB1P37275 1124 aaPredicted RBP15.08■□□□□ 0
SS18-207ENST00000577636 MYO5BQ9ULV0 1848 aa15.08■□□□□ 0
SS18-207ENST00000577636 ADGRL2O95490 1459 aa15.08■□□□□ 0
SS18-207ENST00000577636 COL16A1Q07092 1604 aaPredicted RBP15.07■□□□□ 0
SS18-207ENST00000577636 ITGAEP38570 1179 aa15.07■□□□□ 0
SS18-207ENST00000577636 ADAMTS13Q76LX8 1427 aa15.07■□□□□ 0
SS18-207ENST00000577636 AFF2P51816 1311 aa15.06■□□□□ 0
SS18-207ENST00000577636 TMEM131LA2VDJ0 1609 aa15.06■□□□□ 0
SS18-207ENST00000577636 GCC2Q8IWJ2 1684 aa15.06■□□□□ 0
SS18-207ENST00000577636 ZNF326Q5BKZ1 582 aaKnown RBP15.05■□□□□ -0
SS18-207ENST00000577636 DDX17Q92841 729 aaKnown RBP15.05■□□□□ -0
SS18-207ENST00000577636 C8orf37Q96NL8 207 aa15.05■□□□□ -0
SS18-207ENST00000577636 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.03■□□□□ -0
SS18-207ENST00000577636 PTPRUQ92729 1446 aa15.03■□□□□ -0
SS18-207ENST00000577636 PIK3R4Q99570 1358 aa15.03■□□□□ -0
SS18-207ENST00000577636 QTRT2Q9H974 415 aaKnown RBP15.03■□□□□ -0
SS18-207ENST00000577636 NUP155O75694 1391 aa15.02■□□□□ -0
SS18-207ENST00000577636 CCER1Q8TC90 406 aaPredicted RBP15.02■□□□□ -0
SS18-207ENST00000577636 LRRC59Q96AG4 307 aaKnown RBP15.02■□□□□ -0
SS18-207ENST00000577636 AHDC1Q5TGY3 1603 aaPredicted RBP15□□□□□ -0.01
SS18-207ENST00000577636 ADAMTS2O95450 1211 aa15□□□□□ -0.01
SS18-207ENST00000577636 TRPM2O94759 1503 aa14.98□□□□□ -0.01
SS18-207ENST00000577636 NGLY1Q96IV0 654 aa14.98□□□□□ -0.01
SS18-207ENST00000577636 DIP2AQ14689 1571 aa14.98□□□□□ -0.01
SS18-207ENST00000577636 SHPRHQ149N8 1683 aa14.97□□□□□ -0.01
SS18-207ENST00000577636 RBM6P78332 1123 aaKnown RBP14.97□□□□□ -0.01
SS18-207ENST00000577636 E9PCH4 1651 aa14.96□□□□□ -0.01
SS18-207ENST00000577636 METP08581 1390 aa14.96□□□□□ -0.02
SS18-207ENST00000577636 MST1RQ04912 1400 aa14.95□□□□□ -0.02
SS18-207ENST00000577636 SETD5Q9C0A6 1442 aa14.95□□□□□ -0.02
SS18-207ENST00000577636 ASXL1Q8IXJ9 1541 aa14.95□□□□□ -0.02
SS18-207ENST00000577636 UNC13BO14795 1591 aa14.94□□□□□ -0.02
SS18-207ENST00000577636 DCCP43146 1447 aa14.93□□□□□ -0.02
SS18-207ENST00000577636 PNPLA6Q8IY17 1366 aa14.93□□□□□ -0.02
SS18-207ENST00000577636 USP21Q9UK80 565 aa14.92□□□□□ -0.02
SS18-207ENST00000577636 ROCK1Q13464 1354 aa14.92□□□□□ -0.02
SS18-207ENST00000577636 CDK12Q9NYV4 1490 aaPredicted RBP14.92□□□□□ -0.02
SS18-207ENST00000577636 RGS12O14924 1447 aa14.92□□□□□ -0.02
SS18-207ENST00000577636 ORAI2Q96SN7 254 aa14.91□□□□□ -0.02
SS18-207ENST00000577636 IQGAP3Q86VI3 1631 aa14.89□□□□□ -0.03
SS18-207ENST00000577636 TRPC5Q9UL62 973 aaPredicted RBP14.88□□□□□ -0.03
SS18-207ENST00000577636 ADGRL3Q9HAR2 1447 aa14.88□□□□□ -0.03
SS18-207ENST00000577636 C1orf167Q5SNV9 1468 aa14.87□□□□□ -0.03
SS18-207ENST00000577636 NRXN3Q9Y4C0 1643 aa14.86□□□□□ -0.03
SS18-207ENST00000577636 XRN1Q8IZH2 1706 aaKnown RBP14.86□□□□□ -0.03
SS18-207ENST00000577636 SETBP1Q9Y6X0 1596 aa14.85□□□□□ -0.03
SS18-207ENST00000577636 ATAD2Q6PL18 1390 aa14.85□□□□□ -0.03
SS18-207ENST00000577636 NHSL1Q5SYE7 1610 aa14.84□□□□□ -0.03
SS18-207ENST00000577636 VGFO15240 615 aaPredicted RBP14.84□□□□□ -0.03
SS18-207ENST00000577636 ESCO1Q5FWF5 840 aa14.84□□□□□ -0.03
SS18-207ENST00000577636 ZRANB1Q9UGI0 708 aa14.84□□□□□ -0.03
SS18-207ENST00000577636 XPCQ01831 940 aaPredicted RBP14.83□□□□□ -0.04
SS18-207ENST00000577636 SOS2Q07890 1332 aaPredicted RBP14.83□□□□□ -0.04
SS18-207ENST00000577636 NUTM2FA1L443 756 aa14.82□□□□□ -0.04
SS18-207ENST00000577636 FOXD1Q16676 465 aa14.82□□□□□ -0.04
SS18-207ENST00000577636 FNBP4Q8N3X1 1017 aaPredicted RBP14.82□□□□□ -0.04
SS18-207ENST00000577636 ROBO2Q9HCK4 1378 aa14.82□□□□□ -0.04
SS18-207ENST00000577636 FOXO3O43524 673 aa14.8□□□□□ -0.04
SS18-207ENST00000577636 CLSPNQ9HAW4 1339 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms