RNA–Protein interactions for RNA: ENST00000576012.5

SCARF1-209, Transcript of scavenger receptor class F member 1, humanhuman

TSL 2

Gene SCARF1, Length 3,292 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARF1-209ENST00000576012 HSP90AA2PQ14568 343 aaPredicted RBP18.59■□□□□ 0.57
SCARF1-209ENST00000576012 UHRF1BP1Q6BDS2 1440 aa18.58■□□□□ 0.57
SCARF1-209ENST00000576012 BLMP54132 1417 aaPredicted RBP18.58■□□□□ 0.56
SCARF1-209ENST00000576012 FOXD4L1Q9NU39 408 aa18.58■□□□□ 0.56
SCARF1-209ENST00000576012 ZMYND15Q9H091 742 aa18.57■□□□□ 0.56
SCARF1-209ENST00000576012 HSP90AA1P07900 732 aaKnown RBP18.57■□□□□ 0.56
SCARF1-209ENST00000576012 SENP3Q9H4L4 574 aaPredicted RBP18.57■□□□□ 0.56
SCARF1-209ENST00000576012 CCDC144AA2RUR9 1427 aa18.57■□□□□ 0.56
SCARF1-209ENST00000576012 GLIPR1L2Q4G1C9 344 aa18.55■□□□□ 0.56
SCARF1-209ENST00000576012 CENPJQ9HC77 1338 aaPredicted RBP18.55■□□□□ 0.56
SCARF1-209ENST00000576012 GPATCH8Q9UKJ3 1502 aaKnown RBP18.54■□□□□ 0.56
SCARF1-209ENST00000576012 PCDHB15Q9Y5E8 787 aa18.54■□□□□ 0.56
SCARF1-209ENST00000576012 ERBINQ96RT1 1412 aa18.54■□□□□ 0.56
SCARF1-209ENST00000576012 PDZRN3Q9UPQ7 1066 aa18.54■□□□□ 0.56
SCARF1-209ENST00000576012 ZMYM4Q5VZL5 1548 aa18.53■□□□□ 0.56
SCARF1-209ENST00000576012 C9orf84Q5VXU9 1444 aa18.52■□□□□ 0.56
SCARF1-209ENST00000576012 TRAK2O60296 914 aa18.52■□□□□ 0.56
SCARF1-209ENST00000576012 RLBP1P12271 317 aa18.52■□□□□ 0.56
SCARF1-209ENST00000576012 MCM4P33991 863 aa18.52■□□□□ 0.56
SCARF1-209ENST00000576012 ANTXR1Q9H6X2 564 aa18.52■□□□□ 0.56
SCARF1-209ENST00000576012 ARID3AQ99856 593 aa18.52■□□□□ 0.55
SCARF1-209ENST00000576012 ERCC6L2Q5T890 1561 aa18.51■□□□□ 0.55
SCARF1-209ENST00000576012 AMER1Q5JTC6 1135 aaPredicted RBP18.51■□□□□ 0.55
SCARF1-209ENST00000576012 PRAG1Q86YV5 1406 aa18.5■□□□□ 0.55
SCARF1-209ENST00000576012 ZNF521Q96K83 1311 aa18.5■□□□□ 0.55
SCARF1-209ENST00000576012 TROQ12816 1431 aaPredicted RBP18.5■□□□□ 0.55
SCARF1-209ENST00000576012 E9PSI1 815 aa18.49■□□□□ 0.55
SCARF1-209ENST00000576012 MAPK8IP3Q9UPT6 1336 aa18.48■□□□□ 0.55
SCARF1-209ENST00000576012 MYH16Q9H6N6 1097 aa18.48■□□□□ 0.55
SCARF1-209ENST00000576012 ABCA8O94911 1581 aa18.48■□□□□ 0.55
SCARF1-209ENST00000576012 CGNL1Q0VF96 1302 aa18.48■□□□□ 0.55
SCARF1-209ENST00000576012 TBC1D32Q96NH3 1257 aa18.47■□□□□ 0.55
SCARF1-209ENST00000576012 TRIM44Q96DX7 344 aaPredicted RBP18.46■□□□□ 0.55
SCARF1-209ENST00000576012 SHROOM2Q13796 1616 aa18.46■□□□□ 0.55
SCARF1-209ENST00000576012 ATP10BO94823 1461 aa18.46■□□□□ 0.54
SCARF1-209ENST00000576012 MAGI2Q86UL8 1455 aa18.45■□□□□ 0.54
SCARF1-209ENST00000576012 C22orf23Q9BZE7 217 aa18.44■□□□□ 0.54
SCARF1-209ENST00000576012 CLASP1Q7Z460 1538 aa18.44■□□□□ 0.54
SCARF1-209ENST00000576012 ERBB4Q15303 1308 aa18.44■□□□□ 0.54
SCARF1-209ENST00000576012 NKTRP30414 1462 aaKnown RBP18.43■□□□□ 0.54
SCARF1-209ENST00000576012 COL17A1Q9UMD9 1497 aaPredicted RBP18.43■□□□□ 0.54
SCARF1-209ENST00000576012 WWC1Q8IX03 1113 aa18.43■□□□□ 0.54
SCARF1-209ENST00000576012 EIF3AQ14152 1382 aaKnown RBP18.43■□□□□ 0.54
SCARF1-209ENST00000576012 ZBTB7CA1YPR0 619 aa18.42■□□□□ 0.54
SCARF1-209ENST00000576012 GRPEL1Q9HAV7 217 aa18.42■□□□□ 0.54
SCARF1-209ENST00000576012 CLCN1P35523 988 aa18.42■□□□□ 0.54
SCARF1-209ENST00000576012 ESPNB1AK53 854 aa18.41■□□□□ 0.54
SCARF1-209ENST00000576012 PDE3AQ14432 1141 aa18.4■□□□□ 0.54
SCARF1-209ENST00000576012 FTSJ3Q8IY81 847 aaKnown RBP18.4■□□□□ 0.54
SCARF1-209ENST00000576012 AEBP2Q6ZN18 517 aaPredicted RBP18.4■□□□□ 0.54
SCARF1-209ENST00000576012 CHMP5Q9NZZ3 219 aa18.4■□□□□ 0.54
SCARF1-209ENST00000576012 ARHGEF12Q9NZN5 1544 aa18.4■□□□□ 0.54
SCARF1-209ENST00000576012 TRMT2AQ8IZ69 625 aaKnown RBP18.4■□□□□ 0.54
SCARF1-209ENST00000576012 PLEKHH2Q8IVE3 1493 aa18.39■□□□□ 0.54
SCARF1-209ENST00000576012 PMFBP1Q8TBY8 1022 aa18.39■□□□□ 0.53
SCARF1-209ENST00000576012 RARSP54136 660 aaKnown RBP18.39■□□□□ 0.53
SCARF1-209ENST00000576012 HSCBQ8IWL3 235 aa18.39■□□□□ 0.53
SCARF1-209ENST00000576012 OSCARQ8IYS5 282 aa18.39■□□□□ 0.53
SCARF1-209ENST00000576012 A2MP01023 1474 aa18.38■□□□□ 0.53
SCARF1-209ENST00000576012 FSD2A1L4K1 749 aa18.38■□□□□ 0.53
SCARF1-209ENST00000576012 RBM10P98175 930 aaKnown RBP18.38■□□□□ 0.53
SCARF1-209ENST00000576012 GAS2L3Q86XJ1 694 aa18.38■□□□□ 0.53
SCARF1-209ENST00000576012 RWDD1Q9H446 243 aaPredicted RBP18.38■□□□□ 0.53
SCARF1-209ENST00000576012 MRE11P49959 708 aa18.37■□□□□ 0.53
SCARF1-209ENST00000576012 TCP11L2Q8N4U5 519 aa18.37■□□□□ 0.53
SCARF1-209ENST00000576012 KLHL34Q8N239 644 aa18.36■□□□□ 0.53
SCARF1-209ENST00000576012 TSR2Q969E8 191 aaKnown RBP18.36■□□□□ 0.53
SCARF1-209ENST00000576012 E9PCH4 1651 aa18.36■□□□□ 0.53
SCARF1-209ENST00000576012 HSP90AB1P08238 724 aaKnown RBP18.35■□□□□ 0.53
SCARF1-209ENST00000576012 ITPRIPQ8IWB1 547 aa18.35■□□□□ 0.53
SCARF1-209ENST00000576012 ADGRL2O95490 1459 aa18.35■□□□□ 0.53
SCARF1-209ENST00000576012 NCLP19338 710 aaKnown RBP18.34■□□□□ 0.53
SCARF1-209ENST00000576012 CARD14Q9BXL6 1004 aa18.34■□□□□ 0.53
SCARF1-209ENST00000576012 KDM5DQ9BY66 1539 aa18.33■□□□□ 0.53
SCARF1-209ENST00000576012 MORC1Q86VD1 984 aa18.32■□□□□ 0.52
SCARF1-209ENST00000576012 LNPKQ9C0E8 428 aa18.32■□□□□ 0.52
SCARF1-209ENST00000576012 ABCC2Q92887 1545 aa18.32■□□□□ 0.52
SCARF1-209ENST00000576012 RRP9O43818 475 aaKnown RBP18.32■□□□□ 0.52
SCARF1-209ENST00000576012 PLA2R1Q13018 1463 aa18.32■□□□□ 0.52
SCARF1-209ENST00000576012 FAM135AQ9P2D6 1515 aa18.32■□□□□ 0.52
SCARF1-209ENST00000576012 CDCA8Q53HL2 280 aa18.31■□□□□ 0.52
SCARF1-209ENST00000576012 CFAP70Q5T0N1 1121 aa18.31■□□□□ 0.52
SCARF1-209ENST00000576012 TNPO1Q92973 898 aaKnown RBP18.31■□□□□ 0.52
SCARF1-209ENST00000576012 NLRP1Q9C000 1473 aa18.31■□□□□ 0.52
SCARF1-209ENST00000576012 WDR7Q9Y4E6 1490 aa18.31■□□□□ 0.52
SCARF1-209ENST00000576012 PDE4CQ08493 712 aa18.31■□□□□ 0.52
SCARF1-209ENST00000576012 CHGAP10645 457 aaKnown RBP18.3■□□□□ 0.52
SCARF1-209ENST00000576012 RBM42Q9BTD8 480 aaKnown RBP18.29■□□□□ 0.52
SCARF1-209ENST00000576012 SMC4Q9NTJ3 1288 aa18.29■□□□□ 0.52
SCARF1-209ENST00000576012 KIAA1211Q6ZU35 1233 aa18.29■□□□□ 0.52
SCARF1-209ENST00000576012 ADCY10Q96PN6 1610 aa18.28■□□□□ 0.52
SCARF1-209ENST00000576012 GPRASP1Q5JY77 1395 aa18.28■□□□□ 0.52
SCARF1-209ENST00000576012 U2AF1L5P0DN76 240 aaPredicted RBP18.28■□□□□ 0.52
SCARF1-209ENST00000576012 U2AF1Q01081 240 aaKnown RBP eCLIP18.28■□□□□ 0.52
SCARF1-209ENST00000576012 ITSN2Q9NZM3 1697 aa18.28■□□□□ 0.52
SCARF1-209ENST00000576012 PDIA4P13667 645 aaKnown RBP18.27■□□□□ 0.52
SCARF1-209ENST00000576012 AFAP1Q8N556 730 aa18.27■□□□□ 0.51
SCARF1-209ENST00000576012 DDX11L8A8MPP1 907 aa18.26■□□□□ 0.51
SCARF1-209ENST00000576012 DZIP1LQ8IYY4 767 aaKnown RBP18.26■□□□□ 0.51
SCARF1-209ENST00000576012 SLC12A5Q9H2X9 1139 aa18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms