RNA–Protein interactions for RNA: ENST00000572809.1

NUP88-205, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 771 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-205ENST00000572809 ABCA6Q8N139 1617 aa11.65□□□□□ -0.54
NUP88-205ENST00000572809 MAP3K1Q13233 1512 aa11.65□□□□□ -0.55
NUP88-205ENST00000572809 MBD5Q9P267 1494 aa11.64□□□□□ -0.55
NUP88-205ENST00000572809 AGLP35573 1532 aa11.64□□□□□ -0.55
NUP88-205ENST00000572809 FER1L4A9Z1Z3 1794 aa11.63□□□□□ -0.55
NUP88-205ENST00000572809 ATP7AQ04656 1500 aa11.62□□□□□ -0.55
NUP88-205ENST00000572809 TSPY4P0CV99 314 aa11.62□□□□□ -0.55
NUP88-205ENST00000572809 TSPY10P0CW01 314 aa11.62□□□□□ -0.55
NUP88-205ENST00000572809 RTEL1-TNFRSF6BF6WH68 1400 aa11.61□□□□□ -0.55
NUP88-205ENST00000572809 GGT6Q6P531 493 aa11.61□□□□□ -0.55
NUP88-205ENST00000572809 A2MP01023 1474 aa11.61□□□□□ -0.55
NUP88-205ENST00000572809 CAMSAP2Q08AD1 1489 aa11.6□□□□□ -0.55
NUP88-205ENST00000572809 HSPA2P54652 639 aa11.6□□□□□ -0.55
NUP88-205ENST00000572809 INO80Q9ULG1 1556 aaPredicted RBP11.59□□□□□ -0.55
NUP88-205ENST00000572809 LMTK3Q96Q04 1460 aa11.59□□□□□ -0.55
NUP88-205ENST00000572809 KLHL34Q8N239 644 aa11.59□□□□□ -0.55
NUP88-205ENST00000572809 CCDC141Q6ZP82 1450 aa11.58□□□□□ -0.56
NUP88-205ENST00000572809 DHX29Q7Z478 1369 aaKnown RBP11.58□□□□□ -0.56
NUP88-205ENST00000572809 MIA2Q96PC5 1412 aa11.58□□□□□ -0.56
NUP88-205ENST00000572809 ZMYM3Q14202 1370 aa11.57□□□□□ -0.56
NUP88-205ENST00000572809 MYOM3Q5VTT5 1437 aa11.57□□□□□ -0.56
NUP88-205ENST00000572809 CNTLNQ9NXG0 1405 aa11.57□□□□□ -0.56
NUP88-205ENST00000572809 KIF3BO15066 747 aa11.56□□□□□ -0.56
NUP88-205ENST00000572809 ADGBQ8N7X0 1667 aa11.55□□□□□ -0.56
NUP88-205ENST00000572809 PDCD7Q8N8D1 485 aaKnown RBP11.55□□□□□ -0.56
NUP88-205ENST00000572809 SETD1BQ9UPS6 1966 aaKnown RBP11.55□□□□□ -0.56
NUP88-205ENST00000572809 PLXNC1O60486 1568 aa11.54□□□□□ -0.56
NUP88-205ENST00000572809 ARHGEF5Q12774 1597 aa11.54□□□□□ -0.56
NUP88-205ENST00000572809 C3orf67Q6ZVT6 689 aa11.54□□□□□ -0.56
NUP88-205ENST00000572809 UHRF1BP1Q6BDS2 1440 aa11.53□□□□□ -0.56
NUP88-205ENST00000572809 C3P01024 1663 aa11.53□□□□□ -0.56
NUP88-205ENST00000572809 GOLGA2Q08379 1002 aa11.52□□□□□ -0.57
NUP88-205ENST00000572809 MKRN3Q13064 507 aaKnown RBP11.52□□□□□ -0.57
NUP88-205ENST00000572809 SPOCK2Q92563 424 aa11.52□□□□□ -0.57
NUP88-205ENST00000572809 PREX1Q8TCU6 1659 aa11.52□□□□□ -0.57
NUP88-205ENST00000572809 EMP3P54852 163 aa11.51□□□□□ -0.57
NUP88-205ENST00000572809 L3MBTL3Q96JM7 780 aaPredicted RBP11.51□□□□□ -0.57
NUP88-205ENST00000572809 WASHC2CQ9Y4E1 1318 aa11.51□□□□□ -0.57
NUP88-205ENST00000572809 ILDR1Q86SU0 546 aaPredicted RBP11.5□□□□□ -0.57
NUP88-205ENST00000572809 NPATQ14207 1427 aa11.5□□□□□ -0.57
NUP88-205ENST00000572809 MROH2AA6NES4 1674 aa11.49□□□□□ -0.57
NUP88-205ENST00000572809 CLTCQ00610 1675 aaKnown RBP11.49□□□□□ -0.57
NUP88-205ENST00000572809 ZNF467Q7Z7K2 595 aaPredicted RBP11.49□□□□□ -0.57
NUP88-205ENST00000572809 FGD6Q6ZV73 1430 aa11.49□□□□□ -0.57
NUP88-205ENST00000572809 RRP7BPQ9NSQ0 103 aa11.48□□□□□ -0.57
NUP88-205ENST00000572809 ABCC5O15440 1437 aa11.48□□□□□ -0.57
NUP88-205ENST00000572809 MAST1Q9Y2H9 1570 aa11.48□□□□□ -0.57
NUP88-205ENST00000572809 PTPN23Q9H3S7 1636 aa11.47□□□□□ -0.57
NUP88-205ENST00000572809 PTPRKQ15262 1439 aa11.47□□□□□ -0.57
NUP88-205ENST00000572809 FAM50AQ14320 339 aaKnown RBP11.47□□□□□ -0.57
NUP88-205ENST00000572809 FBXO31Q5XUX0 539 aaPredicted RBP11.47□□□□□ -0.57
NUP88-205ENST00000572809 CHIC2Q9UKJ5 165 aa11.47□□□□□ -0.57
NUP88-205ENST00000572809 POTEB3A0JP26 581 aa11.46□□□□□ -0.57
NUP88-205ENST00000572809 FAM205CA6NFA0 338 aa11.46□□□□□ -0.57
NUP88-205ENST00000572809 PKD2Q13563 968 aa11.46□□□□□ -0.57
NUP88-205ENST00000572809 GSE1Q14687 1217 aa11.46□□□□□ -0.57
NUP88-205ENST00000572809 POTEBQ6S5H4 581 aa11.46□□□□□ -0.57
NUP88-205ENST00000572809 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.46□□□□□ -0.573e-6■■□□□ 13.7
NUP88-205ENST00000572809 TCOF1Q13428 1488 aaKnown RBP11.45□□□□□ -0.58
NUP88-205ENST00000572809 HS3ST6Q96QI5 342 aa11.45□□□□□ -0.58
NUP88-205ENST00000572809 DAPK1P53355 1430 aa11.44□□□□□ -0.58
NUP88-205ENST00000572809 KIF15Q9NS87 1388 aa11.43□□□□□ -0.58
NUP88-205ENST00000572809 PPARGC1BQ86YN6 1023 aaKnown RBP11.43□□□□□ -0.58
NUP88-205ENST00000572809 KRTAP3-3Q9BYR6 98 aa11.43□□□□□ -0.58
NUP88-205ENST00000572809 KRTAP3-2Q9BYR7 98 aa11.43□□□□□ -0.58
NUP88-205ENST00000572809 DUOX2Q9NRD8 1548 aa11.43□□□□□ -0.58
NUP88-205ENST00000572809 ANKRD30AQ9BXX3 1397 aa11.42□□□□□ -0.58
NUP88-205ENST00000572809 STRCQ7RTU9 1775 aa11.42□□□□□ -0.58
NUP88-205ENST00000572809 KDM5DQ9BY66 1539 aa11.42□□□□□ -0.58
NUP88-205ENST00000572809 FAM135AQ9P2D6 1515 aa11.42□□□□□ -0.58
NUP88-205ENST00000572809 PSEN1P49768 467 aa11.42□□□□□ -0.58
NUP88-205ENST00000572809 FBXO41Q8TF61 875 aa11.42□□□□□ -0.58
NUP88-205ENST00000572809 SHANK2Q9UPX8 1470 aa11.42□□□□□ -0.58
NUP88-205ENST00000572809 DNMT1P26358 1616 aaKnown RBP11.42□□□□□ -0.58
NUP88-205ENST00000572809 NCKAP5LQ9HCH0 1330 aa11.41□□□□□ -0.58
NUP88-205ENST00000572809 CERKQ8TCT0 537 aa11.41□□□□□ -0.58
NUP88-205ENST00000572809 TNRQ92752 1358 aa11.41□□□□□ -0.58
NUP88-205ENST00000572809 PZPP20742 1482 aa11.4□□□□□ -0.58
NUP88-205ENST00000572809 EIF2AK4Q9P2K8 1649 aaKnown RBP11.4□□□□□ -0.58
NUP88-205ENST00000572809 PTPRTO14522 1441 aa11.4□□□□□ -0.58
NUP88-205ENST00000572809 NCOA1Q15788 1441 aa11.4□□□□□ -0.58
NUP88-205ENST00000572809 CAMSAP1Q5T5Y3 1602 aa11.39□□□□□ -0.59
NUP88-205ENST00000572809 RNF17Q9BXT8 1623 aaKnown RBP11.39□□□□□ -0.59
NUP88-205ENST00000572809 CHRM1P11229 460 aaPredicted RBP11.39□□□□□ -0.59
NUP88-205ENST00000572809 PLCB2Q00722 1185 aa11.39□□□□□ -0.59
NUP88-205ENST00000572809 THEMISQ8N1K5 641 aaPredicted RBP11.39□□□□□ -0.59
NUP88-205ENST00000572809 ERBINQ96RT1 1412 aa11.39□□□□□ -0.59
NUP88-205ENST00000572809 CROCC2H7BZ55 1655 aa11.39□□□□□ -0.59
NUP88-205ENST00000572809 MYO3AQ8NEV4 1616 aa11.38□□□□□ -0.59
NUP88-205ENST00000572809 A2ML1A8K2U0 1454 aa11.38□□□□□ -0.59
NUP88-205ENST00000572809 CEP170BQ9Y4F5 1589 aaPredicted RBP11.37□□□□□ -0.59
NUP88-205ENST00000572809 ABCC3O15438 1527 aa11.37□□□□□ -0.59
NUP88-205ENST00000572809 DPY19L2Q6NUT2 758 aa11.37□□□□□ -0.59
NUP88-205ENST00000572809 KANK1Q14678 1352 aa11.37□□□□□ -0.59
NUP88-205ENST00000572809 ECM2O94769 699 aaPredicted RBP11.36□□□□□ -0.59
NUP88-205ENST00000572809 ZNF142P52746 1687 aaPredicted RBP11.36□□□□□ -0.59
NUP88-205ENST00000572809 MROH1Q8NDA8 1641 aa11.35□□□□□ -0.59
NUP88-205ENST00000572809 ITGAEP38570 1179 aa11.35□□□□□ -0.59
NUP88-205ENST00000572809 ANKLE2Q86XL3 938 aa11.35□□□□□ -0.59
NUP88-205ENST00000572809 ADGRL2O95490 1459 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms