RNA–Protein interactions for RNA: ENST00000571249.1

CHD3-213, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 330 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-213ENST00000571249 C14orf37Q86TY3 774 aa11.64□□□□□ -0.55
CHD3-213ENST00000571249 CFDP1Q9UEE9 299 aaPredicted RBP11.64□□□□□ -0.55
CHD3-213ENST00000571249 TMEM2Q9UHN6 1383 aa11.64□□□□□ -0.55
CHD3-213ENST00000571249 NKTRP30414 1462 aaKnown RBP11.63□□□□□ -0.55
CHD3-213ENST00000571249 MAST1Q9Y2H9 1570 aa11.63□□□□□ -0.55
CHD3-213ENST00000571249 KDM5AP29375 1690 aaKnown RBP11.63□□□□□ -0.55
CHD3-213ENST00000571249 CFAP65Q6ZU64 1925 aaKnown RBP11.63□□□□□ -0.55
CHD3-213ENST00000571249 ABCC3O15438 1527 aa11.63□□□□□ -0.55
CHD3-213ENST00000571249 TET3O43151 1660 aa11.62□□□□□ -0.55
CHD3-213ENST00000571249 FMN1Q68DA7 1419 aa11.62□□□□□ -0.55
CHD3-213ENST00000571249 SETD5Q9C0A6 1442 aa11.62□□□□□ -0.55
CHD3-213ENST00000571249 R3HDM1Q15032 1099 aaKnown RBP11.62□□□□□ -0.55
CHD3-213ENST00000571249 LRRC59Q96AG4 307 aaKnown RBP11.62□□□□□ -0.55
CHD3-213ENST00000571249 ATRNO75882 1429 aa11.61□□□□□ -0.55
CHD3-213ENST00000571249 ATF3P18847 181 aa11.61□□□□□ -0.55
CHD3-213ENST00000571249 CADPS2Q86UW7 1296 aa11.61□□□□□ -0.55
CHD3-213ENST00000571249 FNBP4Q8N3X1 1017 aaPredicted RBP11.61□□□□□ -0.55
CHD3-213ENST00000571249 PNPLA6Q8IY17 1366 aa11.61□□□□□ -0.55
CHD3-213ENST00000571249 SF3B2Q13435 895 aaKnown RBP11.6□□□□□ -0.55
CHD3-213ENST00000571249 BCANQ96GW7 911 aa11.6□□□□□ -0.55
CHD3-213ENST00000571249 C19orf44Q9H6X5 657 aa11.59□□□□□ -0.55
CHD3-213ENST00000571249 RTEL1-TNFRSF6BF6WH68 1400 aa11.58□□□□□ -0.56
CHD3-213ENST00000571249 PLEKHH2Q8IVE3 1493 aa11.57□□□□□ -0.56
CHD3-213ENST00000571249 STAG3Q9UJ98 1225 aa11.57□□□□□ -0.56
CHD3-213ENST00000571249 MBD5Q9P267 1494 aa11.57□□□□□ -0.56
CHD3-213ENST00000571249 NCBP3Q53F19 620 aaKnown RBP11.56□□□□□ -0.56
CHD3-213ENST00000571249 GJD4Q96KN9 370 aaPredicted RBP11.56□□□□□ -0.56
CHD3-213ENST00000571249 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.55□□□□□ -0.56
CHD3-213ENST00000571249 ARHGAP35Q9NRY4 1499 aa11.55□□□□□ -0.56
CHD3-213ENST00000571249 EN1Q05925 392 aaPredicted RBP11.53□□□□□ -0.56
CHD3-213ENST00000571249 PPP4R3CPQ6ZMV5 832 aa11.53□□□□□ -0.56
CHD3-213ENST00000571249 ASXL1Q8IXJ9 1541 aa11.53□□□□□ -0.56
CHD3-213ENST00000571249 IDI1Q13907 227 aa11.52□□□□□ -0.57
CHD3-213ENST00000571249 PIK3C2BO00750 1634 aa11.52□□□□□ -0.57
CHD3-213ENST00000571249 NCOA3Q9Y6Q9 1424 aa11.52□□□□□ -0.57
CHD3-213ENST00000571249 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.51□□□□□ -0.57
CHD3-213ENST00000571249 CCNB3Q8WWL7 1395 aa11.51□□□□□ -0.57
CHD3-213ENST00000571249 DCAF8L1A6NGE4 600 aa11.5□□□□□ -0.57
CHD3-213ENST00000571249 BAG6P46379 1132 aa11.5□□□□□ -0.57
CHD3-213ENST00000571249 CHD2O14647 1828 aaKnown RBP11.5□□□□□ -0.57
CHD3-213ENST00000571249 CAMSAP2Q08AD1 1489 aa11.5□□□□□ -0.57
CHD3-213ENST00000571249 MROH1Q8NDA8 1641 aa11.49□□□□□ -0.57
CHD3-213ENST00000571249 SEPT12Q8IYM1 358 aa11.49□□□□□ -0.57
CHD3-213ENST00000571249 AMER1Q5JTC6 1135 aaPredicted RBP11.48□□□□□ -0.57
CHD3-213ENST00000571249 BRWD3Q6RI45 1802 aa11.47□□□□□ -0.57
CHD3-213ENST00000571249 EFCAB6Q5THR3 1501 aa11.47□□□□□ -0.57
CHD3-213ENST00000571249 CCDC18Q5T9S5 1454 aa11.46□□□□□ -0.57
CHD3-213ENST00000571249 MST1RQ04912 1400 aa11.46□□□□□ -0.57
CHD3-213ENST00000571249 CAMTA1Q9Y6Y1 1673 aa11.46□□□□□ -0.58
CHD3-213ENST00000571249 RALGAPBQ86X10 1494 aa11.45□□□□□ -0.58
CHD3-213ENST00000571249 PTCH1Q13635 1447 aa11.45□□□□□ -0.58
CHD3-213ENST00000571249 UNC13BO14795 1591 aa11.45□□□□□ -0.58
CHD3-213ENST00000571249 GLI3P10071 1580 aa11.45□□□□□ -0.58
CHD3-213ENST00000571249 CEP152O94986 1710 aa11.44□□□□□ -0.58
CHD3-213ENST00000571249 PPP1R15AO75807 674 aaPredicted RBP11.44□□□□□ -0.58
CHD3-213ENST00000571249 EZH2Q15910 746 aaKnown RBP11.44□□□□□ -0.58
CHD3-213ENST00000571249 KRT27Q7Z3Y8 459 aa11.44□□□□□ -0.58
CHD3-213ENST00000571249 PPP1R1BQ9UD71 204 aaPredicted RBP11.44□□□□□ -0.58
CHD3-213ENST00000571249 TBX22Q9Y458 520 aa11.44□□□□□ -0.58
CHD3-213ENST00000571249 CASKIN1Q8WXD9 1431 aa11.43□□□□□ -0.58
CHD3-213ENST00000571249 UBTFP17480 764 aaKnown RBP11.43□□□□□ -0.58
CHD3-213ENST00000571249 RTN4Q9NQC3 1192 aaKnown RBP11.42□□□□□ -0.58
CHD3-213ENST00000571249 AMOTL2Q9Y2J4 779 aa11.42□□□□□ -0.58
CHD3-213ENST00000571249 PLEKHG1Q9ULL1 1385 aa11.41□□□□□ -0.58
CHD3-213ENST00000571249 CAPN15O75808 1086 aa11.41□□□□□ -0.58
CHD3-213ENST00000571249 FAM182BQ5T319 152 aa11.41□□□□□ -0.58
CHD3-213ENST00000571249 UNC5CLQ8IV45 518 aa11.41□□□□□ -0.58
CHD3-213ENST00000571249 SOS2Q07890 1332 aaPredicted RBP11.4□□□□□ -0.58
CHD3-213ENST00000571249 CCDC141Q6ZP82 1450 aa11.4□□□□□ -0.58
CHD3-213ENST00000571249 EEA1Q15075 1411 aa11.4□□□□□ -0.58
CHD3-213ENST00000571249 ARHGAP31Q2M1Z3 1444 aa11.4□□□□□ -0.58
CHD3-213ENST00000571249 SLC34A2O95436 690 aa11.39□□□□□ -0.59
CHD3-213ENST00000571249 PTPRUQ92729 1446 aa11.38□□□□□ -0.59
CHD3-213ENST00000571249 GIGYF1O75420 1035 aaPredicted RBP11.38□□□□□ -0.59
CHD3-213ENST00000571249 ORAI2Q96SN7 254 aa11.38□□□□□ -0.59
CHD3-213ENST00000571249 NINLQ9Y2I6 1382 aa11.38□□□□□ -0.59
CHD3-213ENST00000571249 ZFYVE9O95405 1425 aa11.37□□□□□ -0.59
CHD3-213ENST00000571249 ADAMTS13Q76LX8 1427 aa11.37□□□□□ -0.59
CHD3-213ENST00000571249 ONECUT3O60422 494 aaPredicted RBP11.37□□□□□ -0.59
CHD3-213ENST00000571249 TSPY4P0CV99 314 aa11.37□□□□□ -0.59
CHD3-213ENST00000571249 TSPY10P0CW01 314 aa11.37□□□□□ -0.59
CHD3-213ENST00000571249 SPON1Q9HCB6 807 aa11.37□□□□□ -0.59
CHD3-213ENST00000571249 DCCP43146 1447 aa11.36□□□□□ -0.59
CHD3-213ENST00000571249 KCNQ2O43526 872 aa11.36□□□□□ -0.59
CHD3-213ENST00000571249 CAMKK2Q96RR4 588 aa11.36□□□□□ -0.59
CHD3-213ENST00000571249 MTUS2Q5JR59 1369 aa11.36□□□□□ -0.59
CHD3-213ENST00000571249 MYOM2P54296 1465 aa11.36□□□□□ -0.59
CHD3-213ENST00000571249 SPHKAPQ2M3C7 1700 aa11.35□□□□□ -0.59
CHD3-213ENST00000571249 RSPH4AQ5TD94 716 aa11.35□□□□□ -0.59
CHD3-213ENST00000571249 RIMS2Q9UQ26 1411 aa11.35□□□□□ -0.59
CHD3-213ENST00000571249 CCDC9Q9Y3X0 531 aaKnown RBP11.33□□□□□ -0.6
CHD3-213ENST00000571249 ADGRB3O60242 1522 aa11.33□□□□□ -0.6
CHD3-213ENST00000571249 SLIT2O94813 1529 aa11.33□□□□□ -0.6
CHD3-213ENST00000571249 A0A0G2JS52 829 aa11.32□□□□□ -0.6
CHD3-213ENST00000571249 MYT1Q01538 1121 aa11.32□□□□□ -0.6
CHD3-213ENST00000571249 C1orf167Q5SNV9 1468 aa11.32□□□□□ -0.6
CHD3-213ENST00000571249 TRPM2O94759 1503 aa11.31□□□□□ -0.6
CHD3-213ENST00000571249 XPCQ01831 940 aaPredicted RBP11.31□□□□□ -0.6
CHD3-213ENST00000571249 VPS72Q15906 364 aa11.31□□□□□ -0.6
CHD3-213ENST00000571249 ADGRL3Q9HAR2 1447 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms