RNA–Protein interactions for RNA: ENST00000570771.1

VPS53-209, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-209ENST00000570771 KANK1Q14678 1352 aa9.53□□□□□ -0.88
VPS53-209ENST00000570771 PIK3C2BO00750 1634 aa9.53□□□□□ -0.88
VPS53-209ENST00000570771 TNRQ92752 1358 aa9.52□□□□□ -0.88
VPS53-209ENST00000570771 TRPM2O94759 1503 aa9.52□□□□□ -0.88
VPS53-209ENST00000570771 HRCP23327 699 aa9.52□□□□□ -0.89
VPS53-209ENST00000570771 SLC4A1APQ9BWU0 796 aaKnown RBP9.52□□□□□ -0.89
VPS53-209ENST00000570771 C19orf67A6NJJ6 358 aa9.51□□□□□ -0.89
VPS53-209ENST00000570771 GABBR2O75899 941 aa9.51□□□□□ -0.89
VPS53-209ENST00000570771 RPRD2Q5VT52 1461 aaKnown RBP9.51□□□□□ -0.89
VPS53-209ENST00000570771 SPHKAPQ2M3C7 1700 aa9.51□□□□□ -0.89
VPS53-209ENST00000570771 ANKRD30BQ9BXX2 1392 aa9.5□□□□□ -0.89
VPS53-209ENST00000570771 CEP170BQ9Y4F5 1589 aaPredicted RBP9.5□□□□□ -0.89
VPS53-209ENST00000570771 ZNF142P52746 1687 aaPredicted RBP9.49□□□□□ -0.89
VPS53-209ENST00000570771 HSPA2P54652 639 aa9.49□□□□□ -0.89
VPS53-209ENST00000570771 ADGRB3O60242 1522 aa9.48□□□□□ -0.89
VPS53-209ENST00000570771 IDI1Q13907 227 aa9.48□□□□□ -0.89
VPS53-209ENST00000570771 A2ML1A8K2U0 1454 aa9.47□□□□□ -0.89
VPS53-209ENST00000570771 TMEM131LA2VDJ0 1609 aa9.47□□□□□ -0.89
VPS53-209ENST00000570771 ESF1Q9H501 851 aaKnown RBP9.47□□□□□ -0.89
VPS53-209ENST00000570771 UBR1Q8IWV7 1749 aa9.47□□□□□ -0.89
VPS53-209ENST00000570771 SPATA31E1Q6ZUB1 1445 aa9.47□□□□□ -0.89
VPS53-209ENST00000570771 CFAP65Q6ZU64 1925 aaKnown RBP9.46□□□□□ -0.89
VPS53-209ENST00000570771 SIN3AQ96ST3 1273 aa9.46□□□□□ -0.9
VPS53-209ENST00000570771 NLRP1Q9C000 1473 aa9.46□□□□□ -0.9
VPS53-209ENST00000570771 NEURL4Q96JN8 1562 aa9.46□□□□□ -0.9
VPS53-209ENST00000570771 PRKAR2AP13861 404 aaKnown RBP9.45□□□□□ -0.9
VPS53-209ENST00000570771 ZFYVE9O95405 1425 aa9.45□□□□□ -0.9
VPS53-209ENST00000570771 UHRF1BP1Q6BDS2 1440 aa9.45□□□□□ -0.9
VPS53-209ENST00000570771 ARHGAP23Q9P227 1491 aa9.44□□□□□ -0.9
VPS53-209ENST00000570771 MYO5BQ9ULV0 1848 aa9.44□□□□□ -0.9
VPS53-209ENST00000570771 NEXMIFQ5QGS0 1516 aa9.43□□□□□ -0.9
VPS53-209ENST00000570771 CCER1Q8TC90 406 aaPredicted RBP9.43□□□□□ -0.9
VPS53-209ENST00000570771 ATF5Q9Y2D1 282 aaPredicted RBP9.43□□□□□ -0.9
VPS53-209ENST00000570771 LTKP29376 864 aa9.42□□□□□ -0.9
VPS53-209ENST00000570771 NUTM2DQ5VT03 806 aaPredicted RBP9.42□□□□□ -0.9
VPS53-209ENST00000570771 SLIT1O75093 1534 aa9.41□□□□□ -0.9
VPS53-209ENST00000570771 CCDC144AA2RUR9 1427 aa9.41□□□□□ -0.9
VPS53-209ENST00000570771 CLSPNQ9HAW4 1339 aa9.41□□□□□ -0.9
VPS53-209ENST00000570771 STRCQ7RTU9 1775 aa9.41□□□□□ -0.9
VPS53-209ENST00000570771 TMEM2Q9UHN6 1383 aa9.4□□□□□ -0.9
VPS53-209ENST00000570771 NCKAP5LQ9HCH0 1330 aa9.4□□□□□ -0.9
VPS53-209ENST00000570771 NRXN3Q9Y4C0 1643 aa9.4□□□□□ -0.9
VPS53-209ENST00000570771 RIMS2Q9UQ26 1411 aa9.39□□□□□ -0.91
VPS53-209ENST00000570771 ASXL1Q8IXJ9 1541 aa9.39□□□□□ -0.91
VPS53-209ENST00000570771 IFT172Q9UG01 1749 aa9.39□□□□□ -0.91
VPS53-209ENST00000570771 CHGAP10645 457 aaKnown RBP9.38□□□□□ -0.91
VPS53-209ENST00000570771 SLC52A1Q9NWF4 448 aa9.38□□□□□ -0.91
VPS53-209ENST00000570771 KDM5AP29375 1690 aaKnown RBP9.38□□□□□ -0.91
VPS53-209ENST00000570771 ADGRF5Q8IZF2 1346 aa9.37□□□□□ -0.91
VPS53-209ENST00000570771 SCAF11Q99590 1463 aaKnown RBP9.37□□□□□ -0.91
VPS53-209ENST00000570771 ZEB1P37275 1124 aaPredicted RBP9.37□□□□□ -0.91
VPS53-209ENST00000570771 RGL3Q3MIN7 710 aa9.37□□□□□ -0.91
VPS53-209ENST00000570771 ADAMTS13Q76LX8 1427 aa9.37□□□□□ -0.91
VPS53-209ENST00000570771 IQGAP1P46940 1657 aa9.36□□□□□ -0.91
VPS53-209ENST00000570771 NRXN1Q9ULB1 1477 aa9.36□□□□□ -0.91
VPS53-209ENST00000570771 NEUROD1Q13562 356 aa9.36□□□□□ -0.91
VPS53-209ENST00000570771 PPLO60437 1756 aa9.36□□□□□ -0.91
VPS53-209ENST00000570771 SETD1AO15047 1707 aaKnown RBP9.35□□□□□ -0.91
VPS53-209ENST00000570771 MED14O60244 1454 aa9.34□□□□□ -0.91
VPS53-209ENST00000570771 POLR1AO95602 1720 aaPredicted RBP9.34□□□□□ -0.91
VPS53-209ENST00000570771 L3MBTL2Q969R5 705 aa9.34□□□□□ -0.91
VPS53-209ENST00000570771 MYOM2P54296 1465 aa9.34□□□□□ -0.91
VPS53-209ENST00000570771 SETD1BQ9UPS6 1966 aaKnown RBP9.33□□□□□ -0.92
VPS53-209ENST00000570771 KIF1BO60333 1816 aa9.33□□□□□ -0.92
VPS53-209ENST00000570771 NPHP4O75161 1426 aaPredicted RBP9.33□□□□□ -0.92
VPS53-209ENST00000570771 PIK3C2GO75747 1445 aa9.33□□□□□ -0.92
VPS53-209ENST00000570771 PTPRUQ92729 1446 aa9.33□□□□□ -0.92
VPS53-209ENST00000570771 NBPF8Q3BBV2 869 aa9.33□□□□□ -0.92
VPS53-209ENST00000570771 SETBP1Q9Y6X0 1596 aa9.33□□□□□ -0.92
VPS53-209ENST00000570771 POTEIP0CG38 1075 aa9.32□□□□□ -0.92
VPS53-209ENST00000570771 ZNF326Q5BKZ1 582 aaKnown RBP9.32□□□□□ -0.92
VPS53-209ENST00000570771 TXNDC2Q86VQ3 553 aa9.32□□□□□ -0.92
VPS53-209ENST00000570771 THEMISQ8N1K5 641 aaPredicted RBP9.32□□□□□ -0.92
VPS53-209ENST00000570771 METP08581 1390 aa9.32□□□□□ -0.92
VPS53-209ENST00000570771 PLEKHG1Q9ULL1 1385 aa9.32□□□□□ -0.92
VPS53-209ENST00000570771 STRCP1A6NGW2 1772 aa9.32□□□□□ -0.92
VPS53-209ENST00000570771 PRAG1Q86YV5 1406 aa9.31□□□□□ -0.92
VPS53-209ENST00000570771 SPDYE2BA6NHP3 402 aa9.31□□□□□ -0.92
VPS53-209ENST00000570771 SPDYE6P0CI01 402 aa9.31□□□□□ -0.92
VPS53-209ENST00000570771 SPDYE2Q495Y8 402 aa9.31□□□□□ -0.92
VPS53-209ENST00000570771 SLC26A8Q96RN1 970 aa9.31□□□□□ -0.92
VPS53-209ENST00000570771 STAG3Q9UJ98 1225 aa9.31□□□□□ -0.92
VPS53-209ENST00000570771 ADGRB1O14514 1584 aa9.31□□□□□ -0.92
VPS53-209ENST00000570771 SPDYE1Q8NFV5 336 aaPredicted RBP9.3□□□□□ -0.92
VPS53-209ENST00000570771 ALKQ9UM73 1620 aa9.3□□□□□ -0.92
VPS53-209ENST00000570771 ZNF335Q9H4Z2 1342 aaPredicted RBP9.3□□□□□ -0.92
VPS53-209ENST00000570771 DCAF11Q8TEB1 546 aa9.29□□□□□ -0.92
VPS53-209ENST00000570771 KDM2AQ9Y2K7 1162 aa9.29□□□□□ -0.92
VPS53-209ENST00000570771 LTBP4Q8N2S1 1624 aa9.28□□□□□ -0.92
VPS53-209ENST00000570771 CFAP70Q5T0N1 1121 aa9.28□□□□□ -0.92
VPS53-209ENST00000570771 ANKLE2Q86XL3 938 aa9.28□□□□□ -0.92
VPS53-209ENST00000570771 TIMELESSQ9UNS1 1208 aa9.28□□□□□ -0.92
VPS53-209ENST00000570771 NBPF1Q3BBV0 1214 aa9.27□□□□□ -0.93
VPS53-209ENST00000570771 NWD1Q149M9 1564 aa9.27□□□□□ -0.93
VPS53-209ENST00000570771 XRN1Q8IZH2 1706 aaKnown RBP9.27□□□□□ -0.93
VPS53-209ENST00000570771 RPGRIP1LQ68CZ1 1315 aa9.27□□□□□ -0.93
VPS53-209ENST00000570771 PPP1R15AO75807 674 aaPredicted RBP9.26□□□□□ -0.93
VPS53-209ENST00000570771 TMEM132EQ6IEE7 984 aa9.26□□□□□ -0.93
VPS53-209ENST00000570771 RBM33Q96EV2 1170 aaKnown RBP9.26□□□□□ -0.93
VPS53-209ENST00000570771 CLEC11AQ9Y240 323 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms