RNA–Protein interactions for RNA: ENST00000569252.5

USB1-215, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 4

Gene USB1, Length 573 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-215ENST00000569252 LMTK2Q8IWU2 1503 aa23.52■■□□□ 1.36
USB1-215ENST00000569252 IQGAP3Q86VI3 1631 aa23.51■■□□□ 1.35
USB1-215ENST00000569252 ARHGAP31Q2M1Z3 1444 aa23.48■■□□□ 1.35
USB1-215ENST00000569252 SLC26A8Q96RN1 970 aa23.46■■□□□ 1.35
USB1-215ENST00000569252 TET3O43151 1660 aa23.45■■□□□ 1.34
USB1-215ENST00000569252 TMEM2Q9UHN6 1383 aa23.45■■□□□ 1.34
USB1-215ENST00000569252 RPRD2Q5VT52 1461 aaKnown RBP23.44■■□□□ 1.34
USB1-215ENST00000569252 TMEM94Q12767 1356 aa23.44■■□□□ 1.34
USB1-215ENST00000569252 IDI1Q13907 227 aa23.44■■□□□ 1.34
USB1-215ENST00000569252 STAG3Q9UJ98 1225 aa23.44■■□□□ 1.34
USB1-215ENST00000569252 EFCAB6Q5THR3 1501 aa23.43■■□□□ 1.34
USB1-215ENST00000569252 FOXD1Q16676 465 aa23.43■■□□□ 1.34
USB1-215ENST00000569252 EID1Q9Y6B2 187 aa23.43■■□□□ 1.34
USB1-215ENST00000569252 SLC52A1Q9NWF4 448 aa23.4■■□□□ 1.34
USB1-215ENST00000569252 ROBO1Q9Y6N7 1651 aa23.38■■□□□ 1.33
USB1-215ENST00000569252 POTEAQ6S8J7 498 aa23.37■■□□□ 1.33
USB1-215ENST00000569252 E9PCH4 1651 aa23.35■■□□□ 1.33
USB1-215ENST00000569252 PROSER2Q86WR7 435 aaPredicted RBP23.35■■□□□ 1.33
USB1-215ENST00000569252 CCER1Q8TC90 406 aaPredicted RBP23.35■■□□□ 1.33
USB1-215ENST00000569252 MYO5BQ9ULV0 1848 aa23.35■■□□□ 1.33
USB1-215ENST00000569252 ADGRB3O60242 1522 aa23.34■■□□□ 1.33
USB1-215ENST00000569252 DHX57Q6P158 1386 aaKnown RBP23.33■■□□□ 1.33
USB1-215ENST00000569252 CHGAP10645 457 aaKnown RBP23.33■■□□□ 1.33
USB1-215ENST00000569252 KCNA6P17658 529 aa23.33■■□□□ 1.33
USB1-215ENST00000569252 NOS1P29475 1434 aa23.33■■□□□ 1.32
USB1-215ENST00000569252 FAM135BQ49AJ0 1406 aa23.33■■□□□ 1.32
USB1-215ENST00000569252 BCANQ96GW7 911 aa23.32■■□□□ 1.32
USB1-215ENST00000569252 SETD1AO15047 1707 aaKnown RBP23.31■■□□□ 1.32
USB1-215ENST00000569252 NWD1Q149M9 1564 aa23.29■■□□□ 1.32
USB1-215ENST00000569252 KDM5AP29375 1690 aaKnown RBP23.28■■□□□ 1.32
USB1-215ENST00000569252 CCDC144AA2RUR9 1427 aa23.28■■□□□ 1.32
USB1-215ENST00000569252 NUTM2DQ5VT03 806 aaPredicted RBP23.28■■□□□ 1.32
USB1-215ENST00000569252 ANKRD30BQ9BXX2 1392 aa23.27■■□□□ 1.31
USB1-215ENST00000569252 SPHKAPQ2M3C7 1700 aa23.25■■□□□ 1.31
USB1-215ENST00000569252 PHLPP1O60346 1717 aa23.24■■□□□ 1.31
USB1-215ENST00000569252 HDGFP51858 240 aaKnown RBP23.23■■□□□ 1.31
USB1-215ENST00000569252 NEUROD1Q13562 356 aa23.23■■□□□ 1.31
USB1-215ENST00000569252 ZNF326Q5BKZ1 582 aaKnown RBP23.23■■□□□ 1.31
USB1-215ENST00000569252 ZFYVE9O95405 1425 aa23.23■■□□□ 1.31
USB1-215ENST00000569252 NKTRP30414 1462 aaKnown RBP23.23■■□□□ 1.31
USB1-215ENST00000569252 TRPM2O94759 1503 aa23.23■■□□□ 1.31
USB1-215ENST00000569252 CLSPNQ9HAW4 1339 aa23.21■■□□□ 1.31
USB1-215ENST00000569252 RIMS2Q9UQ26 1411 aa23.21■■□□□ 1.31
USB1-215ENST00000569252 MSH6P52701 1360 aa23.2■■□□□ 1.3
USB1-215ENST00000569252 CHD2O14647 1828 aaKnown RBP23.19■■□□□ 1.3
USB1-215ENST00000569252 TMEM131LA2VDJ0 1609 aa23.19■■□□□ 1.3
USB1-215ENST00000569252 PPP1R15AO75807 674 aaPredicted RBP23.18■■□□□ 1.3
USB1-215ENST00000569252 RGL3Q3MIN7 710 aa23.18■■□□□ 1.3
USB1-215ENST00000569252 SLAIN2Q9P270 581 aa23.18■■□□□ 1.3
USB1-215ENST00000569252 SIN3AQ96ST3 1273 aa23.17■■□□□ 1.3
USB1-215ENST00000569252 PLEKHG1Q9ULL1 1385 aa23.16■■□□□ 1.3
USB1-215ENST00000569252 LRP6O75581 1613 aa23.16■■□□□ 1.3
USB1-215ENST00000569252 COL16A1Q07092 1604 aaPredicted RBP23.16■■□□□ 1.3
USB1-215ENST00000569252 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.13■■□□□ 1.29
USB1-215ENST00000569252 CLTCL1P53675 1640 aa23.12■■□□□ 1.29
USB1-215ENST00000569252 ADAMTS13Q76LX8 1427 aa23.12■■□□□ 1.29
USB1-215ENST00000569252 RPGRIP1LQ68CZ1 1315 aa23.11■■□□□ 1.29
USB1-215ENST00000569252 C14orf37Q86TY3 774 aa23.11■■□□□ 1.29
USB1-215ENST00000569252 JCADQ9P266 1359 aa23.11■■□□□ 1.29
USB1-215ENST00000569252 KIF1BO60333 1816 aa23.1■■□□□ 1.29
USB1-215ENST00000569252 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.09■■□□□ 1.29
USB1-215ENST00000569252 VGFO15240 615 aaPredicted RBP23.08■■□□□ 1.29
USB1-215ENST00000569252 PTPRUQ92729 1446 aa23.07■■□□□ 1.28
USB1-215ENST00000569252 TONSLQ96HA7 1378 aa23.06■■□□□ 1.28
USB1-215ENST00000569252 DCAF11Q8TEB1 546 aa23.05■■□□□ 1.28
USB1-215ENST00000569252 STAC3Q96MF2 364 aa23.05■■□□□ 1.28
USB1-215ENST00000569252 KDM2AQ9Y2K7 1162 aa23.04■■□□□ 1.28
USB1-215ENST00000569252 TBX22Q9Y458 520 aa23.04■■□□□ 1.28
USB1-215ENST00000569252 SPATA31E1Q6ZUB1 1445 aa23.03■■□□□ 1.28
USB1-215ENST00000569252 MEX3CQ5U5Q3 659 aaKnown RBP23.02■■□□□ 1.28
USB1-215ENST00000569252 TIMELESSQ9UNS1 1208 aa23.02■■□□□ 1.28
USB1-215ENST00000569252 NUTM2BA6NNL0 878 aaPredicted RBP23.01■■□□□ 1.27
USB1-215ENST00000569252 NUTM2EB1AL46 878 aaPredicted RBP23.01■■□□□ 1.27
USB1-215ENST00000569252 NUTM2AQ8IVF1 878 aaPredicted RBP23.01■■□□□ 1.27
USB1-215ENST00000569252 L3MBTL2Q969R5 705 aa23■■□□□ 1.27
USB1-215ENST00000569252 AMOTL2Q9Y2J4 779 aa23■■□□□ 1.27
USB1-215ENST00000569252 AHDC1Q5TGY3 1603 aaPredicted RBP23■■□□□ 1.27
USB1-215ENST00000569252 NRXN3Q9Y4C0 1643 aa22.98■■□□□ 1.27
USB1-215ENST00000569252 ATF3P18847 181 aa22.98■■□□□ 1.27
USB1-215ENST00000569252 DDX17Q92841 729 aaKnown RBP22.98■■□□□ 1.27
USB1-215ENST00000569252 DIP2AQ14689 1571 aa22.97■■□□□ 1.27
USB1-215ENST00000569252 SHPRHQ149N8 1683 aa22.97■■□□□ 1.27
USB1-215ENST00000569252 BRINP3Q76B58 766 aa22.97■■□□□ 1.27
USB1-215ENST00000569252 C19orf44Q9H6X5 657 aa22.95■■□□□ 1.26
USB1-215ENST00000569252 CADPS2Q86UW7 1296 aa22.94■■□□□ 1.26
USB1-215ENST00000569252 SPATA31A6Q5VVP1 1343 aa22.93■■□□□ 1.26
USB1-215ENST00000569252 UPF1Q92900 1129 aaKnown RBP eCLIP22.93■■□□□ 1.26
USB1-215ENST00000569252 XRN1Q8IZH2 1706 aaKnown RBP22.93■■□□□ 1.26
USB1-215ENST00000569252 ASXL1Q8IXJ9 1541 aa22.92■■□□□ 1.26
USB1-215ENST00000569252 NCOA3Q9Y6Q9 1424 aa22.91■■□□□ 1.26
USB1-215ENST00000569252 METP08581 1390 aa22.91■■□□□ 1.26
USB1-215ENST00000569252 NEXMIFQ5QGS0 1516 aa22.9■■□□□ 1.26
USB1-215ENST00000569252 ADGRF5Q8IZF2 1346 aa22.89■■□□□ 1.26
USB1-215ENST00000569252 MST1RQ04912 1400 aa22.89■■□□□ 1.25
USB1-215ENST00000569252 PIK3R4Q99570 1358 aa22.89■■□□□ 1.25
USB1-215ENST00000569252 ZNF772Q68DY9 489 aaPredicted RBP22.87■■□□□ 1.25
USB1-215ENST00000569252 AFF2P51816 1311 aa22.86■■□□□ 1.25
USB1-215ENST00000569252 NHSL1Q5SYE7 1610 aa22.86■■□□□ 1.25
USB1-215ENST00000569252 NALCNQ8IZF0 1738 aa22.85■■□□□ 1.25
USB1-215ENST00000569252 SETBP1Q9Y6X0 1596 aa22.85■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms