RNA–Protein interactions for RNA: ENST00000569243.5

UBR1-209, Transcript of ubiquitin protein ligase E3 component n-recognin 1, human

TSL 3

Gene UBR1, Length 702 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR1-209	ENST00000569243	TLL1	O43897	1013 aa		10.91	□□□□□ -0.66
UBR1-209	ENST00000569243	WFS1	O76024	890 aa		10.91	□□□□□ -0.66
UBR1-209	ENST00000569243	BLOC1S3	Q6QNY0	202 aa		10.91	□□□□□ -0.66
UBR1-209	ENST00000569243	ANKLE1	Q8NAG6	615 aa		10.9	□□□□□ -0.66
UBR1-209	ENST00000569243	CDHR5	Q9HBB8	845 aa		10.9	□□□□□ -0.66
UBR1-209	ENST00000569243	STK17A	Q9UEE5	414 aa		10.9	□□□□□ -0.66
UBR1-209	ENST00000569243	GRXCR2	A6NFK2	248 aa		10.88	□□□□□ -0.67
UBR1-209	ENST00000569243	S1PR4	O95977	384 aa		10.87	□□□□□ -0.67
UBR1-209	ENST00000569243	SPDYE16	A6NNV3	312 aa	Predicted RBP	10.86	□□□□□ -0.67
UBR1-209	ENST00000569243	SLC4A3	P48751	1232 aa		10.86	□□□□□ -0.67
UBR1-209	ENST00000569243	PRR14	Q9BWN1	585 aa		10.86	□□□□□ -0.67
UBR1-209	ENST00000569243	RBM27	Q9P2N5	1060 aa	Known RBP	10.86	□□□□□ -0.67
UBR1-209	ENST00000569243	DACH1	Q9UI36	760 aa		10.86	□□□□□ -0.67
UBR1-209	ENST00000569243	INSM1	Q01101	510 aa	Predicted RBP	10.82	□□□□□ -0.68
UBR1-209	ENST00000569243	GMPR2	Q9P2T1	348 aa	Known RBP	10.82	□□□□□ -0.68
UBR1-209	ENST00000569243	C11orf95	C9JLR9	678 aa	Predicted RBP	10.81	□□□□□ -0.68
UBR1-209	ENST00000569243	PADI6	Q6TGC4	694 aa		10.81	□□□□□ -0.68
UBR1-209	ENST00000569243	FOXC1	Q12948	553 aa		10.8	□□□□□ -0.68
UBR1-209	ENST00000569243	NFX1	Q12986	1120 aa	Known RBP	10.8	□□□□□ -0.68
UBR1-209	ENST00000569243	TTC13	Q8NBP0	860 aa		10.8	□□□□□ -0.68
UBR1-209	ENST00000569243	WIPF1	O43516	503 aa		10.79	□□□□□ -0.68
UBR1-209	ENST00000569243	PLA2G2C	Q5R387	149 aa		10.79	□□□□□ -0.68
UBR1-209	ENST00000569243	OSBP	P22059	807 aa		10.78	□□□□□ -0.68
UBR1-209	ENST00000569243	CRIPAK	Q8N1N5	446 aa		10.77	□□□□□ -0.69
UBR1-209	ENST00000569243	PKD2L1	Q9P0L9	805 aa		10.77	□□□□□ -0.69
UBR1-209	ENST00000569243	EYA1	Q99502	592 aa		10.76	□□□□□ -0.69
UBR1-209	ENST00000569243	AXIN1	O15169	862 aa		10.74	□□□□□ -0.69
UBR1-209	ENST00000569243	NPDC1	Q9NQX5	325 aa	Predicted RBP	10.74	□□□□□ -0.69
UBR1-209	ENST00000569243	LOC100996750	A0A140TA64	210 aa		10.73	□□□□□ -0.69
UBR1-209	ENST00000569243	ADH1B	P00325	375 aa		10.73	□□□□□ -0.69
UBR1-209	ENST00000569243	KRTAP4-6	Q9BYQ5	205 aa		10.73	□□□□□ -0.69
UBR1-209	ENST00000569243	DCAF8L2	P0C7V8	631 aa		10.72	□□□□□ -0.69
UBR1-209	ENST00000569243	SLC6A16	Q9GZN6	736 aa		10.72	□□□□□ -0.69
UBR1-209	ENST00000569243	ACTN4	O43707	911 aa	Known RBP	10.71	□□□□□ -0.69
UBR1-209	ENST00000569243	AVP	P01185	164 aa		10.71	□□□□□ -0.69
UBR1-209	ENST00000569243	KMT5B	Q4FZB7	885 aa		10.7	□□□□□ -0.7
UBR1-209	ENST00000569243	LCE2C	Q5TA81	110 aa		10.7	□□□□□ -0.7
UBR1-209	ENST00000569243	LMOD2	Q6P5Q4	547 aa		10.7	□□□□□ -0.7
UBR1-209	ENST00000569243	TOR4A	Q9NXH8	423 aa		10.68	□□□□□ -0.7
UBR1-209	ENST00000569243	CTC1	Q2NKJ3	1217 aa		10.67	□□□□□ -0.7
UBR1-209	ENST00000569243	CYP4X1	Q8N118	509 aa		10.67	□□□□□ -0.7
UBR1-209	ENST00000569243	NR1I2	O75469	434 aa		10.66	□□□□□ -0.7
UBR1-209	ENST00000569243	CFH	P08603	1231 aa		10.66	□□□□□ -0.7
UBR1-209	ENST00000569243	DNAJB2	P25686	324 aa		10.65	□□□□□ -0.7
UBR1-209	ENST00000569243	E2F4	Q16254	413 aa		10.65	□□□□□ -0.7
UBR1-209	ENST00000569243	TERT	O14746	1132 aa	Known RBP	10.63	□□□□□ -0.71
UBR1-209	ENST00000569243	SMCP	P49901	116 aa	Predicted RBP	10.63	□□□□□ -0.71
UBR1-209	ENST00000569243	SNRPB	P14678	240 aa	Known RBP	10.62	□□□□□ -0.71
UBR1-209	ENST00000569243	TMEM134	Q9H6X4	195 aa		10.62	□□□□□ -0.71
UBR1-209	ENST00000569243	ARIH1	Q9Y4X5	557 aa	Predicted RBP	10.62	□□□□□ -0.71
UBR1-209	ENST00000569243	RPIA	P49247	311 aa		10.6	□□□□□ -0.71
UBR1-209	ENST00000569243	SCUBE3	Q8IX30	993 aa		10.6	□□□□□ -0.71
UBR1-209	ENST00000569243	CD2BP2	O95400	341 aa	Known RBP	10.58	□□□□□ -0.72
UBR1-209	ENST00000569243	SPSB2	Q99619	263 aa		10.58	□□□□□ -0.72
UBR1-209	ENST00000569243	TTC24	A2A3L6	582 aa	Predicted RBP	10.57	□□□□□ -0.72
UBR1-209	ENST00000569243	SLC10A3	P09131	477 aa		10.57	□□□□□ -0.72
UBR1-209	ENST00000569243	RBM46	Q8TBY0	533 aa	Known RBP	10.57	□□□□□ -0.72
UBR1-209	ENST00000569243	ATP13A2	Q9NQ11	1180 aa		10.57	□□□□□ -0.72
UBR1-209	ENST00000569243	FAM181B	A6NEQ2	426 aa		10.56	□□□□□ -0.72
UBR1-209	ENST00000569243	PUS10	Q3MIT2	529 aa	Known RBP	10.56	□□□□□ -0.72
UBR1-209	ENST00000569243	RCCD1	A6NED2	376 aa		10.55	□□□□□ -0.72
UBR1-209	ENST00000569243	FCF1	Q9Y324	198 aa	Known RBP	10.55	□□□□□ -0.72
UBR1-209	ENST00000569243	TRIM47	Q96LD4	638 aa		10.53	□□□□□ -0.72
UBR1-209	ENST00000569243	FAM161A	Q3B820	660 aa		10.52	□□□□□ -0.73
UBR1-209	ENST00000569243	ADGRG1	Q9Y653	693 aa		10.52	□□□□□ -0.73
UBR1-209	ENST00000569243	SENP2	Q9HC62	589 aa		10.51	□□□□□ -0.73
UBR1-209	ENST00000569243	AMER1	Q5JTC6	1135 aa	Predicted RBP	10.5	□□□□□ -0.73
UBR1-209	ENST00000569243	SMPD1	P17405	629 aa		10.49	□□□□□ -0.73
UBR1-209	ENST00000569243	WDR70	Q9NW82	654 aa		10.49	□□□□□ -0.73
UBR1-209	ENST00000569243	ZSCAN1	Q8NBB4	408 aa		10.47	□□□□□ -0.73
UBR1-209	ENST00000569243	PTGDR	Q13258	359 aa		10.46	□□□□□ -0.73
UBR1-209	ENST00000569243	SUZ12	Q15022	739 aa	Known RBP	10.46	□□□□□ -0.73
UBR1-209	ENST00000569243	SLC16A10	Q8TF71	515 aa		10.46	□□□□□ -0.73
UBR1-209	ENST00000569243	LOR	P23490	312 aa	Predicted RBP	10.45	□□□□□ -0.74
UBR1-209	ENST00000569243	GMPR	P36959	345 aa		10.45	□□□□□ -0.74
UBR1-209	ENST00000569243	SNIP1	Q8TAD8	396 aa	Known RBP	10.45	□□□□□ -0.74
UBR1-209	ENST00000569243		J3QL48	77 aa		10.44	□□□□□ -0.74
UBR1-209	ENST00000569243	ZBTB24	O43167	697 aa	Predicted RBP	10.44	□□□□□ -0.74
UBR1-209	ENST00000569243	KIFC2	Q96AC6	838 aa		10.44	□□□□□ -0.74
UBR1-209	ENST00000569243	WNT7A	O00755	349 aa		10.42	□□□□□ -0.74
UBR1-209	ENST00000569243	FAM160A2	Q8N612	972 aa	Predicted RBP	10.42	□□□□□ -0.74
UBR1-209	ENST00000569243	PRDM9	Q9NQV7	894 aa		10.42	□□□□□ -0.74
UBR1-209	ENST00000569243	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	10.41	□□□□□ -0.74
UBR1-209	ENST00000569243	HPS1	Q92902	700 aa		10.41	□□□□□ -0.74
UBR1-209	ENST00000569243	THAP11	Q96EK4	314 aa		10.41	□□□□□ -0.74
UBR1-209	ENST00000569243	MLLT3	P42568	568 aa	Predicted RBP	10.4	□□□□□ -0.74
UBR1-209	ENST00000569243	NXF1	Q9UBU9	619 aa	Known RBP	10.4	□□□□□ -0.74
UBR1-209	ENST00000569243	RSPH4A	Q5TD94	716 aa		10.39	□□□□□ -0.75
UBR1-209	ENST00000569243	BBX	Q8WY36	941 aa	Predicted RBP	10.39	□□□□□ -0.75
UBR1-209	ENST00000569243	MRGPRX2	Q96LB1	330 aa		10.39	□□□□□ -0.75
UBR1-209	ENST00000569243	MORN1	Q5T089	497 aa		10.38	□□□□□ -0.75
UBR1-209	ENST00000569243	FMNL1	O95466	1100 aa	Predicted RBP	10.37	□□□□□ -0.75
UBR1-209	ENST00000569243	IRF7	Q92985	503 aa		10.37	□□□□□ -0.75
UBR1-209	ENST00000569243	VEGFB	P49765	207 aa		10.36	□□□□□ -0.75
UBR1-209	ENST00000569243	NUTM2F	A1L443	756 aa		10.34	□□□□□ -0.75
UBR1-209	ENST00000569243	FUT2	Q10981	343 aa		10.34	□□□□□ -0.75
UBR1-209	ENST00000569243	TRIM32	Q13049	653 aa		10.34	□□□□□ -0.75
UBR1-209	ENST00000569243	SLC27A5	Q9Y2P5	690 aa		10.34	□□□□□ -0.75
UBR1-209	ENST00000569243	RTN4	Q9NQC3	1192 aa	Known RBP	10.33	□□□□□ -0.76
UBR1-209	ENST00000569243	PXYLP1	Q8TE99	480 aa		10.32	□□□□□ -0.76

Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms