RNA–Protein interactions for RNA: ENST00000569036.2

CDH3-208, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 563 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-208ENST00000569036 CHD2O14647 1828 aaKnown RBP18.44■□□□□ 0.54
CDH3-208ENST00000569036 ARHGEF5Q12774 1597 aa18.43■□□□□ 0.54
CDH3-208ENST00000569036 ARHGAP31Q2M1Z3 1444 aa18.43■□□□□ 0.54
CDH3-208ENST00000569036 RSPH4AQ5TD94 716 aa18.42■□□□□ 0.54
CDH3-208ENST00000569036 EHBP1L1Q8N3D4 1523 aa18.42■□□□□ 0.54
CDH3-208ENST00000569036 MAST1Q9Y2H9 1570 aa18.42■□□□□ 0.54
CDH3-208ENST00000569036 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.41■□□□□ 0.54
CDH3-208ENST00000569036 STAG3Q9UJ98 1225 aa18.4■□□□□ 0.54
CDH3-208ENST00000569036 LRP5O75197 1615 aa18.4■□□□□ 0.54
CDH3-208ENST00000569036 CEP162Q5TB80 1403 aa18.4■□□□□ 0.54
CDH3-208ENST00000569036 C8orf37Q96NL8 207 aa18.38■□□□□ 0.53
CDH3-208ENST00000569036 NCOA3Q9Y6Q9 1424 aa18.38■□□□□ 0.53
CDH3-208ENST00000569036 TSPY4P0CV99 314 aa18.36■□□□□ 0.53
CDH3-208ENST00000569036 TSPY10P0CW01 314 aa18.36■□□□□ 0.53
CDH3-208ENST00000569036 SETD5Q9C0A6 1442 aa18.35■□□□□ 0.53
CDH3-208ENST00000569036 CADPS2Q86UW7 1296 aa18.35■□□□□ 0.53
CDH3-208ENST00000569036 NGLY1Q96IV0 654 aa18.35■□□□□ 0.53
CDH3-208ENST00000569036 ADGRB3O60242 1522 aa18.34■□□□□ 0.53
CDH3-208ENST00000569036 BRINP3Q76B58 766 aa18.34■□□□□ 0.53
CDH3-208ENST00000569036 C14orf37Q86TY3 774 aa18.33■□□□□ 0.52
CDH3-208ENST00000569036 NHSL1Q5SYE7 1610 aa18.33■□□□□ 0.52
CDH3-208ENST00000569036 IDI1Q13907 227 aa18.32■□□□□ 0.52
CDH3-208ENST00000569036 BCANQ96GW7 911 aa18.32■□□□□ 0.52
CDH3-208ENST00000569036 ASXL1Q8IXJ9 1541 aa18.32■□□□□ 0.52
CDH3-208ENST00000569036 ATF3P18847 181 aa18.31■□□□□ 0.52
CDH3-208ENST00000569036 CCDC125Q86Z20 511 aa18.29■□□□□ 0.52
CDH3-208ENST00000569036 C19orf44Q9H6X5 657 aa18.29■□□□□ 0.52
CDH3-208ENST00000569036 DUOX2Q9NRD8 1548 aa18.28■□□□□ 0.52
CDH3-208ENST00000569036 PNPLA6Q8IY17 1366 aa18.28■□□□□ 0.52
CDH3-208ENST00000569036 PLEKHG1Q9ULL1 1385 aa18.28■□□□□ 0.52
CDH3-208ENST00000569036 ZFYVE9O95405 1425 aa18.25■□□□□ 0.51
CDH3-208ENST00000569036 MYO5BQ9ULV0 1848 aa18.24■□□□□ 0.51
CDH3-208ENST00000569036 LRRC59Q96AG4 307 aaKnown RBP18.24■□□□□ 0.51
CDH3-208ENST00000569036 ADAMTS2O95450 1211 aa18.23■□□□□ 0.51
CDH3-208ENST00000569036 TRPC5Q9UL62 973 aaPredicted RBP18.23■□□□□ 0.51
CDH3-208ENST00000569036 ATRNO75882 1429 aa18.23■□□□□ 0.51
CDH3-208ENST00000569036 USP21Q9UK80 565 aa18.22■□□□□ 0.51
CDH3-208ENST00000569036 DCCP43146 1447 aa18.22■□□□□ 0.51
CDH3-208ENST00000569036 TBX22Q9Y458 520 aa18.21■□□□□ 0.51
CDH3-208ENST00000569036 NOS1P29475 1434 aa18.21■□□□□ 0.51
CDH3-208ENST00000569036 MST1RQ04912 1400 aa18.2■□□□□ 0.5
CDH3-208ENST00000569036 LMTK2Q8IWU2 1503 aa18.19■□□□□ 0.5
CDH3-208ENST00000569036 BLMP54132 1417 aaPredicted RBP18.19■□□□□ 0.5
CDH3-208ENST00000569036 ERBINQ96RT1 1412 aa18.19■□□□□ 0.5
CDH3-208ENST00000569036 RIMS2Q9UQ26 1411 aa18.18■□□□□ 0.5
CDH3-208ENST00000569036 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.18■□□□□ 0.5
CDH3-208ENST00000569036 ADAMTS13Q76LX8 1427 aa18.17■□□□□ 0.5
CDH3-208ENST00000569036 PPP1R15AO75807 674 aaPredicted RBP18.17■□□□□ 0.5
CDH3-208ENST00000569036 DDX17Q92841 729 aaKnown RBP18.17■□□□□ 0.5
CDH3-208ENST00000569036 GCC2Q8IWJ2 1684 aa18.17■□□□□ 0.5
CDH3-208ENST00000569036 KANK1Q14678 1352 aa18.16■□□□□ 0.5
CDH3-208ENST00000569036 KIF15Q9NS87 1388 aa18.16■□□□□ 0.5
CDH3-208ENST00000569036 DEFB132Q7Z7B7 95 aa18.15■□□□□ 0.5
CDH3-208ENST00000569036 FNBP4Q8N3X1 1017 aaPredicted RBP18.15■□□□□ 0.5
CDH3-208ENST00000569036 PIK3R4Q99570 1358 aa18.15■□□□□ 0.5
CDH3-208ENST00000569036 SLC52A1Q9NWF4 448 aa18.14■□□□□ 0.49
CDH3-208ENST00000569036 PTCH1Q13635 1447 aa18.13■□□□□ 0.49
CDH3-208ENST00000569036 TRPM2O94759 1503 aa18.13■□□□□ 0.49
CDH3-208ENST00000569036 TMEM131LA2VDJ0 1609 aa18.12■□□□□ 0.49
CDH3-208ENST00000569036 BCL9LQ86UU0 1499 aa18.12■□□□□ 0.49
CDH3-208ENST00000569036 PTPRUQ92729 1446 aa18.11■□□□□ 0.49
CDH3-208ENST00000569036 LAMC1P11047 1609 aa18.1■□□□□ 0.49
CDH3-208ENST00000569036 UNC13BO14795 1591 aa18.1■□□□□ 0.49
CDH3-208ENST00000569036 HRCP23327 699 aa18.1■□□□□ 0.49
CDH3-208ENST00000569036 XRN1Q8IZH2 1706 aaKnown RBP18.09■□□□□ 0.49
CDH3-208ENST00000569036 CROCC2H7BZ55 1655 aa18.09■□□□□ 0.49
CDH3-208ENST00000569036 PSDA5PKW4 1024 aaPredicted RBP18.09■□□□□ 0.49
CDH3-208ENST00000569036 HDGFP51858 240 aaKnown RBP18.09■□□□□ 0.49
CDH3-208ENST00000569036 AMOTL2Q9Y2J4 779 aa18.09■□□□□ 0.49
CDH3-208ENST00000569036 BRWD3Q6RI45 1802 aa18.08■□□□□ 0.48
CDH3-208ENST00000569036 YY1P25490 414 aa18.08■□□□□ 0.48
CDH3-208ENST00000569036 COL22A1Q8NFW1 1626 aaPredicted RBP18.07■□□□□ 0.48
CDH3-208ENST00000569036 SPHKAPQ2M3C7 1700 aa18.06■□□□□ 0.48
CDH3-208ENST00000569036 RRP7BPQ9NSQ0 103 aa18.06■□□□□ 0.48
CDH3-208ENST00000569036 MARF1Q9Y4F3 1742 aaKnown RBP18.05■□□□□ 0.48
CDH3-208ENST00000569036 MYOM3Q5VTT5 1437 aa18.05■□□□□ 0.48
CDH3-208ENST00000569036 SF3B2Q13435 895 aaKnown RBP18.04■□□□□ 0.48
CDH3-208ENST00000569036 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.04■□□□□ 0.48
CDH3-208ENST00000569036 GJD4Q96KN9 370 aaPredicted RBP18.04■□□□□ 0.48
CDH3-208ENST00000569036 GLI3P10071 1580 aa18.04■□□□□ 0.48
CDH3-208ENST00000569036 NALCNQ8IZF0 1738 aa18.03■□□□□ 0.48
CDH3-208ENST00000569036 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.03■□□□□ 0.48
CDH3-208ENST00000569036 IFFO2Q5TF58 517 aa18.03■□□□□ 0.48
CDH3-208ENST00000569036 RPRD2Q5VT52 1461 aaKnown RBP18.02■□□□□ 0.48
CDH3-208ENST00000569036 ADGRL3Q9HAR2 1447 aa18.02■□□□□ 0.48
CDH3-208ENST00000569036 MYOM2P54296 1465 aa18.01■□□□□ 0.47
CDH3-208ENST00000569036 SOS2Q07890 1332 aaPredicted RBP18.01■□□□□ 0.47
CDH3-208ENST00000569036 C1orf167Q5SNV9 1468 aa18■□□□□ 0.47
CDH3-208ENST00000569036 RALGAPBQ86X10 1494 aa18■□□□□ 0.47
CDH3-208ENST00000569036 ABCC5O15440 1437 aa17.98■□□□□ 0.47
CDH3-208ENST00000569036 NRXN3Q9Y4C0 1643 aa17.98■□□□□ 0.47
CDH3-208ENST00000569036 CHGAP10645 457 aaKnown RBP17.95■□□□□ 0.46
CDH3-208ENST00000569036 BAG6P46379 1132 aa17.92■□□□□ 0.46
CDH3-208ENST00000569036 R3HDM1Q15032 1099 aaKnown RBP17.91■□□□□ 0.46
CDH3-208ENST00000569036 ORAI2Q96SN7 254 aa17.91■□□□□ 0.46
CDH3-208ENST00000569036 SLIT2O94813 1529 aa17.91■□□□□ 0.46
CDH3-208ENST00000569036 DAPK1P53355 1430 aa17.9■□□□□ 0.46
CDH3-208ENST00000569036 UNC5CLQ8IV45 518 aa17.9■□□□□ 0.46
CDH3-208ENST00000569036 SEPT12Q8IYM1 358 aa17.9■□□□□ 0.46
CDH3-208ENST00000569036 METP08581 1390 aa17.9■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms