RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 AMER1Q5JTC6 1135 aaPredicted RBP18.59■□□□□ 0.57
VPS35-210ENST00000568784 FTSJ3Q8IY81 847 aaKnown RBP18.58■□□□□ 0.56
VPS35-210ENST00000568784 SPAG9O60271 1321 aaKnown RBP18.57■□□□□ 0.56
VPS35-210ENST00000568784 SYNJ2O15056 1496 aa18.57■□□□□ 0.56
VPS35-210ENST00000568784 A2MP01023 1474 aa18.57■□□□□ 0.56
VPS35-210ENST00000568784 KDM2BQ8NHM5 1336 aa18.56■□□□□ 0.56
VPS35-210ENST00000568784 U2SURPO15042 1029 aaKnown RBP18.56■□□□□ 0.56
VPS35-210ENST00000568784 SEC24BO95487 1268 aa18.55■□□□□ 0.56
VPS35-210ENST00000568784 PRKCSHP14314 528 aaPredicted RBP18.55■□□□□ 0.56
VPS35-210ENST00000568784 POGKQ9P215 609 aa18.55■□□□□ 0.56
VPS35-210ENST00000568784 U2AF1L5P0DN76 240 aaPredicted RBP18.54■□□□□ 0.56
VPS35-210ENST00000568784 U2AF1Q01081 240 aaKnown RBP eCLIP18.54■□□□□ 0.56
VPS35-210ENST00000568784 COL17A1Q9UMD9 1497 aaPredicted RBP18.54■□□□□ 0.56
VPS35-210ENST00000568784 TNNQ9UQP3 1299 aa18.54■□□□□ 0.56
VPS35-210ENST00000568784 POLR1AO95602 1720 aaPredicted RBP18.54■□□□□ 0.56
VPS35-210ENST00000568784 ADGBQ8N7X0 1667 aa18.54■□□□□ 0.56
VPS35-210ENST00000568784 MFAP1P55081 439 aaKnown RBP18.53■□□□□ 0.56
VPS35-210ENST00000568784 CGNL1Q0VF96 1302 aa18.53■□□□□ 0.56
VPS35-210ENST00000568784 BLMP54132 1417 aaPredicted RBP18.51■□□□□ 0.55
VPS35-210ENST00000568784 SLC12A5Q9H2X9 1139 aa18.5■□□□□ 0.55
VPS35-210ENST00000568784 TCP11L2Q8N4U5 519 aa18.5■□□□□ 0.55
VPS35-210ENST00000568784 TMEM132EQ6IEE7 984 aa18.5■□□□□ 0.55
VPS35-210ENST00000568784 CFAP53Q96M91 514 aa18.49■□□□□ 0.55
VPS35-210ENST00000568784 SYCP2Q9BX26 1530 aa18.49■□□□□ 0.55
VPS35-210ENST00000568784 HSP90AA1P07900 732 aaKnown RBP18.48■□□□□ 0.55
VPS35-210ENST00000568784 WWC1Q8IX03 1113 aa18.48■□□□□ 0.55
VPS35-210ENST00000568784 EIF4G3O43432 1585 aaKnown RBP18.48■□□□□ 0.55
VPS35-210ENST00000568784 GGT6Q6P531 493 aa18.48■□□□□ 0.55
VPS35-210ENST00000568784 PLA2R1Q13018 1463 aa18.47■□□□□ 0.55
VPS35-210ENST00000568784 PDZRN3Q9UPQ7 1066 aa18.47■□□□□ 0.55
VPS35-210ENST00000568784 EIF3AQ14152 1382 aaKnown RBP18.47■□□□□ 0.55
VPS35-210ENST00000568784 MAGI2Q86UL8 1455 aa18.47■□□□□ 0.55
VPS35-210ENST00000568784 MAPK8IP3Q9UPT6 1336 aa18.47■□□□□ 0.55
VPS35-210ENST00000568784 CEP170Q5SW79 1584 aa18.47■□□□□ 0.55
VPS35-210ENST00000568784 ITPRIPQ8IWB1 547 aa18.46■□□□□ 0.55
VPS35-210ENST00000568784 ABCC10Q5T3U5 1492 aa18.46■□□□□ 0.55
VPS35-210ENST00000568784 SHANK2Q9UPX8 1470 aa18.46■□□□□ 0.55
VPS35-210ENST00000568784 ZMYM4Q5VZL5 1548 aa18.46■□□□□ 0.55
VPS35-210ENST00000568784 PMFBP1Q8TBY8 1022 aa18.46■□□□□ 0.54
VPS35-210ENST00000568784 MTHFSP49914 203 aa18.45■□□□□ 0.54
VPS35-210ENST00000568784 RWDD1Q9H446 243 aaPredicted RBP18.45■□□□□ 0.54
VPS35-210ENST00000568784 STK26Q9P289 416 aa18.45■□□□□ 0.54
VPS35-210ENST00000568784 SMC4Q9NTJ3 1288 aa18.45■□□□□ 0.54
VPS35-210ENST00000568784 KDM5DQ9BY66 1539 aa18.45■□□□□ 0.54
VPS35-210ENST00000568784 GPRASP1Q5JY77 1395 aa18.44■□□□□ 0.54
VPS35-210ENST00000568784 TSR2Q969E8 191 aaKnown RBP18.44■□□□□ 0.54
VPS35-210ENST00000568784 NKTRP30414 1462 aaKnown RBP18.44■□□□□ 0.54
VPS35-210ENST00000568784 CARD14Q9BXL6 1004 aa18.44■□□□□ 0.54
VPS35-210ENST00000568784 KANK1Q14678 1352 aa18.43■□□□□ 0.54
VPS35-210ENST00000568784 FOXD4L1Q9NU39 408 aa18.43■□□□□ 0.54
VPS35-210ENST00000568784 ADGRF5Q8IZF2 1346 aa18.43■□□□□ 0.54
VPS35-210ENST00000568784 RLBP1P12271 317 aa18.42■□□□□ 0.54
VPS35-210ENST00000568784 PDE3AQ14432 1141 aa18.42■□□□□ 0.54
VPS35-210ENST00000568784 PCDHB15Q9Y5E8 787 aa18.42■□□□□ 0.54
VPS35-210ENST00000568784 RUNDC1Q96C34 613 aa18.41■□□□□ 0.54
VPS35-210ENST00000568784 NAP1L5Q96NT1 182 aaPredicted RBP18.4■□□□□ 0.54
VPS35-210ENST00000568784 CDC42BPAQ5VT25 1732 aa18.4■□□□□ 0.54
VPS35-210ENST00000568784 ZNF521Q96K83 1311 aa18.4■□□□□ 0.54
VPS35-210ENST00000568784 RARSP54136 660 aaKnown RBP18.39■□□□□ 0.54
VPS35-210ENST00000568784 SRPK2P78362 688 aaKnown RBP18.38■□□□□ 0.53
VPS35-210ENST00000568784 MYH16Q9H6N6 1097 aa18.37■□□□□ 0.53
VPS35-210ENST00000568784 HSCBQ8IWL3 235 aa18.36■□□□□ 0.53
VPS35-210ENST00000568784 TBC1D2Q9BYX2 928 aa18.36■□□□□ 0.53
VPS35-210ENST00000568784 CROCC2H7BZ55 1655 aa18.35■□□□□ 0.53
VPS35-210ENST00000568784 WDR7Q9Y4E6 1490 aa18.35■□□□□ 0.53
VPS35-210ENST00000568784 GOLGA6L3A6NEY3 463 aa18.35■□□□□ 0.53
VPS35-210ENST00000568784 L1TD1Q5T7N2 865 aaKnown RBP18.35■□□□□ 0.53
VPS35-210ENST00000568784 ZKSCAN2Q63HK3 967 aa18.35■□□□□ 0.53
VPS35-210ENST00000568784 DZIP1LQ8IYY4 767 aaKnown RBP18.35■□□□□ 0.53
VPS35-210ENST00000568784 SCAF11Q99590 1463 aaKnown RBP18.35■□□□□ 0.53
VPS35-210ENST00000568784 ASXL1Q8IXJ9 1541 aa18.35■□□□□ 0.53
VPS35-210ENST00000568784 TRPM1Q7Z4N2 1603 aa18.34■□□□□ 0.53
VPS35-210ENST00000568784 ELL2O00472 640 aaPredicted RBP18.34■□□□□ 0.53
VPS35-210ENST00000568784 GGNBP2Q9H3C7 697 aa18.34■□□□□ 0.53
VPS35-210ENST00000568784 CABP2Q9NPB3 220 aa18.34■□□□□ 0.53
VPS35-210ENST00000568784 SAMD9LQ8IVG5 1584 aa18.34■□□□□ 0.53
VPS35-210ENST00000568784 C22orf23Q9BZE7 217 aa18.33■□□□□ 0.53
VPS35-210ENST00000568784 EXOSC9Q06265 439 aaKnown RBP18.33■□□□□ 0.53
VPS35-210ENST00000568784 NUP160Q12769 1436 aa18.33■□□□□ 0.52
VPS35-210ENST00000568784 NSD3Q9BZ95 1437 aa18.33■□□□□ 0.52
VPS35-210ENST00000568784 HSP90AB1P08238 724 aaKnown RBP18.33■□□□□ 0.52
VPS35-210ENST00000568784 LNPKQ9C0E8 428 aa18.33■□□□□ 0.52
VPS35-210ENST00000568784 TRAPPC8Q9Y2L5 1435 aa18.32■□□□□ 0.52
VPS35-210ENST00000568784 SLC24A1O60721 1099 aa18.31■□□□□ 0.52
VPS35-210ENST00000568784 SCAPERQ9BY12 1400 aa18.3■□□□□ 0.52
VPS35-210ENST00000568784 PRDM15P57071 1507 aaPredicted RBP18.29■□□□□ 0.52
VPS35-210ENST00000568784 ABCA8O94911 1581 aa18.29■□□□□ 0.52
VPS35-210ENST00000568784 TRMT2AQ8IZ69 625 aaKnown RBP18.29■□□□□ 0.52
VPS35-210ENST00000568784 USP19O94966 1318 aa18.29■□□□□ 0.52
VPS35-210ENST00000568784 PIK3C2GO75747 1445 aa18.28■□□□□ 0.52
VPS35-210ENST00000568784 MVPQ14764 893 aaKnown RBP18.27■□□□□ 0.52
VPS35-210ENST00000568784 PANK2Q9BZ23 570 aa18.27■□□□□ 0.52
VPS35-210ENST00000568784 APBB1O00213 710 aa18.27■□□□□ 0.51
VPS35-210ENST00000568784 NCLP19338 710 aaKnown RBP18.27■□□□□ 0.51
VPS35-210ENST00000568784 TBC1D32Q96NH3 1257 aa18.27■□□□□ 0.51
VPS35-210ENST00000568784 ADCY10Q96PN6 1610 aa18.26■□□□□ 0.51
VPS35-210ENST00000568784 PNNQ9H307 717 aaKnown RBP18.26■□□□□ 0.51
VPS35-210ENST00000568784 FAM43AQ8N2R8 423 aa18.26■□□□□ 0.51
VPS35-210ENST00000568784 NGEFQ8N5V2 710 aa18.26■□□□□ 0.51
VPS35-210ENST00000568784 TRIM44Q96DX7 344 aaPredicted RBP18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms