RNA–Protein interactions for RNA: ENST00000568452.6

CLN3-233, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,616 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-233ENST00000568452 TMEM131LA2VDJ0 1609 aa26.59■■□□□ 1.85
CLN3-233ENST00000568452 ADGRF5Q8IZF2 1346 aa26.58■■□□□ 1.84
CLN3-233ENST00000568452 WASHC2AQ641Q2 1341 aa26.56■■□□□ 1.84
CLN3-233ENST00000568452 VGFO15240 615 aaPredicted RBP26.56■■□□□ 1.84
CLN3-233ENST00000568452 NEXMIFQ5QGS0 1516 aa26.55■■□□□ 1.84
CLN3-233ENST00000568452 POLR1AO95602 1720 aaPredicted RBP26.55■■□□□ 1.84
CLN3-233ENST00000568452 CCDC7Q96M83 1385 aa26.55■■□□□ 1.84
CLN3-233ENST00000568452 ZFYVE9O95405 1425 aa26.54■■□□□ 1.84
CLN3-233ENST00000568452 STAG3Q9UJ98 1225 aa26.54■■□□□ 1.84
CLN3-233ENST00000568452 TNRQ92752 1358 aa26.53■■□□□ 1.84
CLN3-233ENST00000568452 FER1L4A9Z1Z3 1794 aa26.52■■□□□ 1.84
CLN3-233ENST00000568452 PIK3C2GO75747 1445 aa26.52■■□□□ 1.84
CLN3-233ENST00000568452 ST20-MTHFSA0A0A6YYL1 179 aa26.52■■□□□ 1.84
CLN3-233ENST00000568452 ADAMTSL3P82987 1691 aa26.51■■□□□ 1.83
CLN3-233ENST00000568452 SCAF11Q99590 1463 aaKnown RBP26.5■■□□□ 1.83
CLN3-233ENST00000568452 MIER1Q8N108 512 aa26.5■■□□□ 1.83
CLN3-233ENST00000568452 MYO5BQ9ULV0 1848 aa26.49■■□□□ 1.83
CLN3-233ENST00000568452 C11orf95C9JLR9 678 aaPredicted RBP26.49■■□□□ 1.83
CLN3-233ENST00000568452 IQGAP1P46940 1657 aa26.48■■□□□ 1.83
CLN3-233ENST00000568452 CFAP70Q5T0N1 1121 aa26.48■■□□□ 1.83
CLN3-233ENST00000568452 KIF7Q2M1P5 1343 aa26.48■■□□□ 1.83
CLN3-233ENST00000568452 SETBP1Q9Y6X0 1596 aa26.47■■□□□ 1.83
CLN3-233ENST00000568452 A2ML1A8K2U0 1454 aa26.47■■□□□ 1.83
CLN3-233ENST00000568452 C14orf93Q9H972 538 aaKnown RBP26.47■■□□□ 1.83
CLN3-233ENST00000568452 EIF3AQ14152 1382 aaKnown RBP26.45■■□□□ 1.83
CLN3-233ENST00000568452 C3P01024 1663 aa26.44■■□□□ 1.82
CLN3-233ENST00000568452 RIMS1Q86UR5 1692 aaKnown RBP26.44■■□□□ 1.82
CLN3-233ENST00000568452 KDM5AP29375 1690 aaKnown RBP26.43■■□□□ 1.82
CLN3-233ENST00000568452 NLRP1Q9C000 1473 aa26.42■■□□□ 1.82
CLN3-233ENST00000568452 RIMS2Q9UQ26 1411 aa26.38■■□□□ 1.81
CLN3-233ENST00000568452 CEBPAP49715 358 aaPredicted RBP26.38■■□□□ 1.81
CLN3-233ENST00000568452 NUTM2DQ5VT03 806 aaPredicted RBP26.38■■□□□ 1.81
CLN3-233ENST00000568452 PLPPR3Q6T4P5 718 aa26.38■■□□□ 1.81
CLN3-233ENST00000568452 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.38■■□□□ 1.81
CLN3-233ENST00000568452 SLC24A1O60721 1099 aa26.37■■□□□ 1.81
CLN3-233ENST00000568452 HDGFP51858 240 aaKnown RBP26.37■■□□□ 1.81
CLN3-233ENST00000568452 TESK2Q96S53 571 aa26.37■■□□□ 1.81
CLN3-233ENST00000568452 ADGRB1O14514 1584 aa26.36■■□□□ 1.81
CLN3-233ENST00000568452 TMF1P82094 1093 aa26.36■■□□□ 1.81
CLN3-233ENST00000568452 KDM4FA0A1W2PPD8 638 aa26.34■■□□□ 1.81
CLN3-233ENST00000568452 ANP32CO43423 234 aa26.34■■□□□ 1.81
CLN3-233ENST00000568452 UBR1Q8IWV7 1749 aa26.33■■□□□ 1.81
CLN3-233ENST00000568452 POLR3GLQ9BT43 218 aa26.32■■□□□ 1.8
CLN3-233ENST00000568452 PTPRMP28827 1452 aa26.32■■□□□ 1.8
CLN3-233ENST00000568452 MYO3AQ8NEV4 1616 aa26.29■■□□□ 1.8
CLN3-233ENST00000568452 CDCA8Q53HL2 280 aa26.28■■□□□ 1.8
CLN3-233ENST00000568452 TMEM2Q9UHN6 1383 aa26.28■■□□□ 1.8
CLN3-233ENST00000568452 DISP3Q9P2K9 1392 aa26.27■■□□□ 1.8
CLN3-233ENST00000568452 TMEM132EQ6IEE7 984 aa26.27■■□□□ 1.8
CLN3-233ENST00000568452 SBNO2Q9Y2G9 1366 aa26.26■■□□□ 1.8
CLN3-233ENST00000568452 ALKQ9UM73 1620 aa26.26■■□□□ 1.79
CLN3-233ENST00000568452 TRAK1Q9UPV9 953 aa26.25■■□□□ 1.79
CLN3-233ENST00000568452 CENPJQ9HC77 1338 aaPredicted RBP26.24■■□□□ 1.79
CLN3-233ENST00000568452 ASXL1Q8IXJ9 1541 aa26.22■■□□□ 1.79
CLN3-233ENST00000568452 THEMISQ8N1K5 641 aaPredicted RBP26.2■■□□□ 1.78
CLN3-233ENST00000568452 SLIT1O75093 1534 aa26.19■■□□□ 1.78
CLN3-233ENST00000568452 CCER2I3L3R5 266 aa26.18■■□□□ 1.78
CLN3-233ENST00000568452 ARHGAP23Q9P227 1491 aa26.18■■□□□ 1.78
CLN3-233ENST00000568452 YTHDC2Q9H6S0 1430 aaKnown RBP26.18■■□□□ 1.78
CLN3-233ENST00000568452 EID1Q9Y6B2 187 aa26.17■■□□□ 1.78
CLN3-233ENST00000568452 ARHGEF28Q8N1W1 1705 aaKnown RBP26.17■■□□□ 1.78
CLN3-233ENST00000568452 QRICH2Q9H0J4 1663 aa26.15■■□□□ 1.78
CLN3-233ENST00000568452 NRXN3Q9Y4C0 1643 aa26.15■■□□□ 1.78
CLN3-233ENST00000568452 CEP170BQ9Y4F5 1589 aaPredicted RBP26.15■■□□□ 1.78
CLN3-233ENST00000568452 PLEKHG1Q9ULL1 1385 aa26.15■■□□□ 1.78
CLN3-233ENST00000568452 SETD1AO15047 1707 aaKnown RBP26.14■■□□□ 1.78
CLN3-233ENST00000568452 TXNDC2Q86VQ3 553 aa26.13■■□□□ 1.77
CLN3-233ENST00000568452 SENP3Q9H4L4 574 aaPredicted RBP26.13■■□□□ 1.77
CLN3-233ENST00000568452 STK26Q9P289 416 aa26.12■■□□□ 1.77
CLN3-233ENST00000568452 LRPPRCP42704 1394 aaKnown RBP26.12■■□□□ 1.77
CLN3-233ENST00000568452 SETD1BQ9UPS6 1966 aaKnown RBP26.11■■□□□ 1.77
CLN3-233ENST00000568452 BCANQ96GW7 911 aa26.1■■□□□ 1.77
CLN3-233ENST00000568452 DLC1Q96QB1 1528 aa26.1■■□□□ 1.77
CLN3-233ENST00000568452 PRKRIP1Q9H875 184 aaPredicted RBP26.1■■□□□ 1.77
CLN3-233ENST00000568452 ZNF142P52746 1687 aaPredicted RBP26.09■■□□□ 1.77
CLN3-233ENST00000568452 LTKP29376 864 aa26.09■■□□□ 1.77
CLN3-233ENST00000568452 ABCC11Q96J66 1382 aa26.08■■□□□ 1.77
CLN3-233ENST00000568452 PUS7Q96PZ0 661 aaKnown RBP26.06■■□□□ 1.76
CLN3-233ENST00000568452 POGKQ9P215 609 aa26.05■■□□□ 1.76
CLN3-233ENST00000568452 EVC2Q86UK5 1308 aa26.05■■□□□ 1.76
CLN3-233ENST00000568452 ADAMTS13Q76LX8 1427 aa26.05■■□□□ 1.76
CLN3-233ENST00000568452 METP08581 1390 aa26.04■■□□□ 1.76
CLN3-233ENST00000568452 PRAM1Q96QH2 718 aa26.03■■□□□ 1.76
CLN3-233ENST00000568452 PANK3Q9H999 370 aa26.03■■□□□ 1.76
CLN3-233ENST00000568452 KTN1Q86UP2 1357 aaKnown RBP26.03■■□□□ 1.76
CLN3-233ENST00000568452 SIRT1Q96EB6 747 aa26.02■■□□□ 1.76
CLN3-233ENST00000568452 MED14O60244 1454 aa26.02■■□□□ 1.76
CLN3-233ENST00000568452 TECPR2O15040 1411 aa26.01■■□□□ 1.75
CLN3-233ENST00000568452 KNDC1Q76NI1 1749 aa26.01■■□□□ 1.75
CLN3-233ENST00000568452 MYOM1P52179 1685 aa26■■□□□ 1.75
CLN3-233ENST00000568452 PER1O15534 1290 aaPredicted RBP26■■□□□ 1.75
CLN3-233ENST00000568452 AEBP2Q6ZN18 517 aaPredicted RBP26■■□□□ 1.75
CLN3-233ENST00000568452 DIP2AQ14689 1571 aa26■■□□□ 1.75
CLN3-233ENST00000568452 TBX22Q9Y458 520 aa25.99■■□□□ 1.75
CLN3-233ENST00000568452 TULP4Q9NRJ4 1543 aa25.98■■□□□ 1.75
CLN3-233ENST00000568452 FAM135BQ49AJ0 1406 aa25.98■■□□□ 1.75
CLN3-233ENST00000568452 SAFB2Q14151 953 aaKnown RBP eCLIP25.97■■□□□ 1.75
CLN3-233ENST00000568452 RALBP1Q15311 655 aa25.96■■□□□ 1.75
CLN3-233ENST00000568452 ANKLE2Q86XL3 938 aa25.96■■□□□ 1.75
CLN3-233ENST00000568452 YTHDC1Q96MU7 727 aaKnown RBP25.96■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms