RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 SPINK5Q9NQ38 1064 aaPredicted RBP17.78■□□□□ 0.44
CLK3-215ENST00000564353 PDE4AP27815 886 aa17.78■□□□□ 0.44
CLK3-215ENST00000564353 APAF1O14727 1248 aa17.77■□□□□ 0.44
CLK3-215ENST00000564353 NEUROD2Q15784 382 aa17.77■□□□□ 0.44
CLK3-215ENST00000564353 TRAK1Q9UPV9 953 aa17.77■□□□□ 0.44
CLK3-215ENST00000564353 NPM1P06748 294 aaKnown RBP eCLIP17.76■□□□□ 0.43
CLK3-215ENST00000564353 FANCAO15360 1455 aa17.76■□□□□ 0.43
CLK3-215ENST00000564353 TMEM132EQ6IEE7 984 aa17.76■□□□□ 0.43
CLK3-215ENST00000564353 LAS1LQ9Y4W2 734 aaKnown RBP17.76■□□□□ 0.43
CLK3-215ENST00000564353 WASHC2CQ9Y4E1 1318 aa17.76■□□□□ 0.43
CLK3-215ENST00000564353 BLMP54132 1417 aaPredicted RBP17.74■□□□□ 0.43
CLK3-215ENST00000564353 SLC24A1O60721 1099 aa17.74■□□□□ 0.43
CLK3-215ENST00000564353 CARD14Q9BXL6 1004 aa17.74■□□□□ 0.43
CLK3-215ENST00000564353 DMRT2Q9Y5R5 561 aa17.74■□□□□ 0.43
CLK3-215ENST00000564353 DUSP27Q5VZP5 1158 aa17.74■□□□□ 0.43
CLK3-215ENST00000564353 KANK1Q14678 1352 aa17.73■□□□□ 0.43
CLK3-215ENST00000564353 DEKP35659 375 aaKnown RBP17.73■□□□□ 0.43
CLK3-215ENST00000564353 SAFB2Q14151 953 aaKnown RBP eCLIP17.72■□□□□ 0.43
CLK3-215ENST00000564353 EIF2AK4Q9P2K8 1649 aaKnown RBP17.72■□□□□ 0.43
CLK3-215ENST00000564353 GOLGA2Q08379 1002 aa17.72■□□□□ 0.43
CLK3-215ENST00000564353 RRP7AQ9Y3A4 280 aaKnown RBP17.72■□□□□ 0.43
CLK3-215ENST00000564353 CLTCL1P53675 1640 aa17.72■□□□□ 0.43
CLK3-215ENST00000564353 SCAF11Q99590 1463 aaKnown RBP17.72■□□□□ 0.43
CLK3-215ENST00000564353 BCAR3O75815 825 aa17.71■□□□□ 0.43
CLK3-215ENST00000564353 ZFYVE16Q7Z3T8 1539 aa17.71■□□□□ 0.43
CLK3-215ENST00000564353 CDCA8Q53HL2 280 aa17.71■□□□□ 0.42
CLK3-215ENST00000564353 MADDQ8WXG6 1647 aa17.7■□□□□ 0.42
CLK3-215ENST00000564353 TCERG1O14776 1098 aaKnown RBP17.7■□□□□ 0.42
CLK3-215ENST00000564353 ADGRL1O94910 1474 aa17.7■□□□□ 0.42
CLK3-215ENST00000564353 SLC4A3P48751 1232 aa17.69■□□□□ 0.42
CLK3-215ENST00000564353 RGS3P49796 1198 aa17.69■□□□□ 0.42
CLK3-215ENST00000564353 SLC12A5Q9H2X9 1139 aa17.69■□□□□ 0.42
CLK3-215ENST00000564353 BACH2Q9BYV9 841 aa17.68■□□□□ 0.42
CLK3-215ENST00000564353 TRPM2O94759 1503 aa17.66■□□□□ 0.42
CLK3-215ENST00000564353 RTEL1-TNFRSF6BF6WH68 1400 aa17.66■□□□□ 0.42
CLK3-215ENST00000564353 ZMYM4Q5VZL5 1548 aa17.66■□□□□ 0.42
CLK3-215ENST00000564353 ABCA9Q8IUA7 1624 aa17.65■□□□□ 0.42
CLK3-215ENST00000564353 ATP7AQ04656 1500 aa17.65■□□□□ 0.42
CLK3-215ENST00000564353 EIF5BO60841 1220 aaKnown RBP17.65■□□□□ 0.42
CLK3-215ENST00000564353 PTPRTO14522 1441 aa17.65■□□□□ 0.42
CLK3-215ENST00000564353 CYB5RLQ6IPT4 315 aa17.65■□□□□ 0.42
CLK3-215ENST00000564353 EIF3AQ14152 1382 aaKnown RBP17.64■□□□□ 0.41
CLK3-215ENST00000564353 LAMC1P11047 1609 aa17.64■□□□□ 0.41
CLK3-215ENST00000564353 RNF17Q9BXT8 1623 aaKnown RBP17.64■□□□□ 0.41
CLK3-215ENST00000564353 SLFN5Q08AF3 891 aa17.64■□□□□ 0.41
CLK3-215ENST00000564353 UBE2Q2Q8WVN8 375 aa17.64■□□□□ 0.41
CLK3-215ENST00000564353 CFAP65Q6ZU64 1925 aaKnown RBP17.63■□□□□ 0.41
CLK3-215ENST00000564353 ASXL1Q8IXJ9 1541 aa17.63■□□□□ 0.41
CLK3-215ENST00000564353 RAPGEF3O95398 923 aa17.63■□□□□ 0.41
CLK3-215ENST00000564353 NOS1P29475 1434 aa17.63■□□□□ 0.41
CLK3-215ENST00000564353 ARAP3Q8WWN8 1544 aa17.63■□□□□ 0.41
CLK3-215ENST00000564353 CD109Q6YHK3 1445 aa17.62■□□□□ 0.41
CLK3-215ENST00000564353 ZNF521Q96K83 1311 aa17.62■□□□□ 0.41
CLK3-215ENST00000564353 FRAT1Q92837 279 aaPredicted RBP17.62■□□□□ 0.41
CLK3-215ENST00000564353 BCL2L13Q9BXK5 485 aa17.62■□□□□ 0.41
CLK3-215ENST00000564353 SPHKAPQ2M3C7 1700 aa17.61■□□□□ 0.41
CLK3-215ENST00000564353 RTL5Q5HYW3 569 aaPredicted RBP17.61■□□□□ 0.41
CLK3-215ENST00000564353 MORC1Q86VD1 984 aa17.61■□□□□ 0.41
CLK3-215ENST00000564353 STK26Q9P289 416 aa17.61■□□□□ 0.41
CLK3-215ENST00000564353 ERVK-7P63135 1459 aa17.6■□□□□ 0.41
CLK3-215ENST00000564353 CENPJQ9HC77 1338 aaPredicted RBP17.6■□□□□ 0.41
CLK3-215ENST00000564353 IQGAP1P46940 1657 aa17.6■□□□□ 0.41
CLK3-215ENST00000564353 CANXP27824 592 aaKnown RBP17.59■□□□□ 0.41
CLK3-215ENST00000564353 PANK1Q8TE04 598 aa17.58■□□□□ 0.41
CLK3-215ENST00000564353 TNNQ9UQP3 1299 aa17.57■□□□□ 0.4
CLK3-215ENST00000564353 COG6Q9Y2V7 657 aa17.57■□□□□ 0.4
CLK3-215ENST00000564353 NSD3Q9BZ95 1437 aa17.56■□□□□ 0.4
CLK3-215ENST00000564353 NEFMP07197 916 aa17.56■□□□□ 0.4
CLK3-215ENST00000564353 CABP2Q9NPB3 220 aa17.56■□□□□ 0.4
CLK3-215ENST00000564353 SYNMO15061 1565 aa17.56■□□□□ 0.4
CLK3-215ENST00000564353 INO80Q9ULG1 1556 aaPredicted RBP17.56■□□□□ 0.4
CLK3-215ENST00000564353 KDM2BQ8NHM5 1336 aa17.55■□□□□ 0.4
CLK3-215ENST00000564353 CEP152O94986 1710 aa17.55■□□□□ 0.4
CLK3-215ENST00000564353 MS4A1P11836 297 aa17.55■□□□□ 0.4
CLK3-215ENST00000564353 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.55■□□□□ 0.4
CLK3-215ENST00000564353 TET3O43151 1660 aa17.54■□□□□ 0.4
CLK3-215ENST00000564353 ABCA6Q8N139 1617 aa17.54■□□□□ 0.4
CLK3-215ENST00000564353 MTHFSP49914 203 aa17.54■□□□□ 0.4
CLK3-215ENST00000564353 CLUAP1Q96AJ1 413 aa17.54■□□□□ 0.4
CLK3-215ENST00000564353 IGHDP01880 384 aa17.53■□□□□ 0.4
CLK3-215ENST00000564353 WWC1Q8IX03 1113 aa17.53■□□□□ 0.4
CLK3-215ENST00000564353 PIK3C2GO75747 1445 aa17.53■□□□□ 0.4
CLK3-215ENST00000564353 MYOM1P52179 1685 aa17.53■□□□□ 0.4
CLK3-215ENST00000564353 CENPQQ7L2Z9 268 aaPredicted RBP17.53■□□□□ 0.4
CLK3-215ENST00000564353 KIDINS220Q9ULH0 1771 aa17.52■□□□□ 0.4
CLK3-215ENST00000564353 E9PSI1 815 aa17.51■□□□□ 0.39
CLK3-215ENST00000564353 TCP11L2Q8N4U5 519 aa17.51■□□□□ 0.39
CLK3-215ENST00000564353 STAC3Q96MF2 364 aa17.51■□□□□ 0.39
CLK3-215ENST00000564353 MROH1Q8NDA8 1641 aa17.51■□□□□ 0.39
CLK3-215ENST00000564353 PLEKHG5O94827 1062 aa17.51■□□□□ 0.39
CLK3-215ENST00000564353 NPATQ14207 1427 aa17.51■□□□□ 0.39
CLK3-215ENST00000564353 ZNF518AQ6AHZ1 1483 aa17.51■□□□□ 0.39
CLK3-215ENST00000564353 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.5■□□□□ 0.39
CLK3-215ENST00000564353 DEPDC5O75140 1603 aa17.5■□□□□ 0.39
CLK3-215ENST00000564353 MROH2AA6NES4 1674 aa17.5■□□□□ 0.39
CLK3-215ENST00000564353 KDM5AP29375 1690 aaKnown RBP17.49■□□□□ 0.39
CLK3-215ENST00000564353 TRMT2AQ8IZ69 625 aaKnown RBP17.49■□□□□ 0.39
CLK3-215ENST00000564353 MAP3K4Q9Y6R4 1608 aa17.49■□□□□ 0.39
CLK3-215ENST00000564353 PPRC1Q5VV67 1664 aaKnown RBP17.49■□□□□ 0.39
CLK3-215ENST00000564353 NKTRP30414 1462 aaKnown RBP17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms