RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 SPRYD7Q5W111 196 aa10.6□□□□□ -0.71
VPS35-205ENST00000563984 NBPF26B4DH59 902 aa10.59□□□□□ -0.71
VPS35-205ENST00000563984 RNF223E7ERA6 249 aa10.59□□□□□ -0.71
VPS35-205ENST00000563984 ZPR1O75312 459 aa10.59□□□□□ -0.71
VPS35-205ENST00000563984 PRIM1P49642 420 aaKnown RBP10.59□□□□□ -0.71
VPS35-205ENST00000563984 ZNF598Q86UK7 904 aaKnown RBP10.57□□□□□ -0.72
VPS35-205ENST00000563984 HDGFP51858 240 aaKnown RBP10.56□□□□□ -0.72
VPS35-205ENST00000563984 NUDT18Q6ZVK8 323 aa10.56□□□□□ -0.72
VPS35-205ENST00000563984 CERKQ8TCT0 537 aa10.56□□□□□ -0.72
VPS35-205ENST00000563984 FAM187AA6NFU0 413 aa10.54□□□□□ -0.72
VPS35-205ENST00000563984 ST8SIA5O15466 376 aa10.53□□□□□ -0.72
VPS35-205ENST00000563984 GDF9O60383 454 aa10.53□□□□□ -0.72
VPS35-205ENST00000563984 AAASQ9NRG9 546 aa10.53□□□□□ -0.72
VPS35-205ENST00000563984 SWT1Q5T5J6 900 aaKnown RBP10.52□□□□□ -0.73
VPS35-205ENST00000563984 LIAT1Q6ZQX7 453 aa10.52□□□□□ -0.73
VPS35-205ENST00000563984 NECTIN2Q92692 538 aa10.52□□□□□ -0.73
VPS35-205ENST00000563984 CDHR5Q9HBB8 845 aa10.52□□□□□ -0.73
VPS35-205ENST00000563984 TNFRSF10AO00220 468 aa10.5□□□□□ -0.73
VPS35-205ENST00000563984 ZNF697Q5TEC3 545 aa10.5□□□□□ -0.73
VPS35-205ENST00000563984 OSBPP22059 807 aa10.49□□□□□ -0.73
VPS35-205ENST00000563984 SLF2Q8IX21 1173 aa10.49□□□□□ -0.73
VPS35-205ENST00000563984 ANKLE1Q8NAG6 615 aa10.49□□□□□ -0.73
VPS35-205ENST00000563984 PPEF1O14829 653 aaPredicted RBP10.48□□□□□ -0.73
VPS35-205ENST00000563984 STK17AQ9UEE5 414 aa10.48□□□□□ -0.73
VPS35-205ENST00000563984 WFS1O76024 890 aa10.47□□□□□ -0.73
VPS35-205ENST00000563984 MLLT3P42568 568 aaPredicted RBP10.46□□□□□ -0.73
VPS35-205ENST00000563984 BLOC1S3Q6QNY0 202 aa10.46□□□□□ -0.73
VPS35-205ENST00000563984 RBM27Q9P2N5 1060 aaKnown RBP10.46□□□□□ -0.73
VPS35-205ENST00000563984 PCDHB3Q9Y5E6 796 aa10.46□□□□□ -0.73
VPS35-205ENST00000563984 SEMA3EO15041 775 aa10.45□□□□□ -0.74
VPS35-205ENST00000563984 TLL1O43897 1013 aa10.45□□□□□ -0.74
VPS35-205ENST00000563984 DACH1Q9UI36 760 aa10.45□□□□□ -0.74
VPS35-205ENST00000563984 TTC13Q8NBP0 860 aa10.44□□□□□ -0.74
VPS35-205ENST00000563984 WIPF1O43516 503 aa10.42□□□□□ -0.74
VPS35-205ENST00000563984 S1PR4O95977 384 aa10.42□□□□□ -0.74
VPS35-205ENST00000563984 NFX1Q12986 1120 aaKnown RBP10.42□□□□□ -0.74
VPS35-205ENST00000563984 SMYD5Q6GMV2 418 aa10.41□□□□□ -0.74
VPS35-205ENST00000563984 LOC100996750A0A140TA64 210 aa10.4□□□□□ -0.74
VPS35-205ENST00000563984 TESPA1A2RU30 521 aaPredicted RBP10.4□□□□□ -0.74
VPS35-205ENST00000563984 CRIPAKQ8N1N5 446 aa10.4□□□□□ -0.74
VPS35-205ENST00000563984 PRR14Q9BWN1 585 aa10.4□□□□□ -0.74
VPS35-205ENST00000563984 KRTAP4-6Q9BYQ5 205 aa10.4□□□□□ -0.74
VPS35-205ENST00000563984 PLA2G2CQ5R387 149 aa10.38□□□□□ -0.75
VPS35-205ENST00000563984 PADI6Q6TGC4 694 aa10.38□□□□□ -0.75
VPS35-205ENST00000563984 PKD2L1Q9P0L9 805 aa10.38□□□□□ -0.75
VPS35-205ENST00000563984 GMPR2Q9P2T1 348 aaKnown RBP10.38□□□□□ -0.75
VPS35-205ENST00000563984 INSM1Q01101 510 aaPredicted RBP10.37□□□□□ -0.75
VPS35-205ENST00000563984 EYA1Q99502 592 aa10.37□□□□□ -0.75
VPS35-205ENST00000563984 NPDC1Q9NQX5 325 aaPredicted RBP10.37□□□□□ -0.75
VPS35-205ENST00000563984 LCE2CQ5TA81 110 aa10.35□□□□□ -0.75
VPS35-205ENST00000563984 C11orf95C9JLR9 678 aaPredicted RBP10.34□□□□□ -0.75
VPS35-205ENST00000563984 AVPP01185 164 aa10.34□□□□□ -0.75
VPS35-205ENST00000563984 SLC4A3P48751 1232 aa10.34□□□□□ -0.75
VPS35-205ENST00000563984 SLC24A1O60721 1099 aa10.33□□□□□ -0.76
VPS35-205ENST00000563984 FOXC1Q12948 553 aa10.31□□□□□ -0.76
VPS35-205ENST00000563984 LMOD2Q6P5Q4 547 aa10.31□□□□□ -0.76
VPS35-205ENST00000563984 NUTM2FA1L443 756 aa10.3□□□□□ -0.76
VPS35-205ENST00000563984 TULP1O00294 542 aaPredicted RBP10.3□□□□□ -0.76
VPS35-205ENST00000563984 ACTN4O43707 911 aaKnown RBP10.3□□□□□ -0.76
VPS35-205ENST00000563984 ADH1BP00325 375 aa10.3□□□□□ -0.76
VPS35-205ENST00000563984 AXIN1O15169 862 aa10.29□□□□□ -0.76
VPS35-205ENST00000563984 TOR4AQ9NXH8 423 aa10.29□□□□□ -0.76
VPS35-205ENST00000563984 PTGDRQ13258 359 aa10.28□□□□□ -0.76
VPS35-205ENST00000563984 RBM26Q5T8P6 1007 aaKnown RBP10.27□□□□□ -0.77
VPS35-205ENST00000563984 SLC6A16Q9GZN6 736 aa10.27□□□□□ -0.77
VPS35-205ENST00000563984 FCHSD2O94868 740 aa10.26□□□□□ -0.77
VPS35-205ENST00000563984 SMCPP49901 116 aaPredicted RBP10.26□□□□□ -0.77
VPS35-205ENST00000563984 FAM161AQ3B820 660 aa10.26□□□□□ -0.77
VPS35-205ENST00000563984 CTC1Q2NKJ3 1217 aa10.25□□□□□ -0.77
VPS35-205ENST00000563984 KMT5BQ4FZB7 885 aa10.24□□□□□ -0.77
VPS35-205ENST00000563984 TERTO14746 1132 aaKnown RBP10.22□□□□□ -0.77
VPS35-205ENST00000563984 HIC1Q14526 733 aa10.22□□□□□ -0.77
VPS35-205ENST00000563984 CFHP08603 1231 aa10.21□□□□□ -0.77
VPS35-205ENST00000563984 DNAJB2P25686 324 aa10.21□□□□□ -0.77
VPS35-205ENST00000563984 TMEM134Q9H6X4 195 aa10.21□□□□□ -0.77
VPS35-205ENST00000563984 NR1I2O75469 434 aa10.2□□□□□ -0.78
VPS35-205ENST00000563984 RPIAP49247 311 aa10.2□□□□□ -0.78
VPS35-205ENST00000563984 GPIHBP1Q8IV16 184 aa10.2□□□□□ -0.78
VPS35-205ENST00000563984 CYP4X1Q8N118 509 aa10.2□□□□□ -0.78
VPS35-205ENST00000563984 SNRPBP14678 240 aaKnown RBP10.19□□□□□ -0.78
VPS35-205ENST00000563984 SCUBE3Q8IX30 993 aa10.18□□□□□ -0.78
VPS35-205ENST00000563984 GNPATO15228 680 aa10.17□□□□□ -0.78
VPS35-205ENST00000563984 GPR37O15354 613 aa10.17□□□□□ -0.78
VPS35-205ENST00000563984 SLC10A3P09131 477 aa10.17□□□□□ -0.78
VPS35-205ENST00000563984 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.17□□□□□ -0.78
VPS35-205ENST00000563984 ADGRG1Q9Y653 693 aa10.17□□□□□ -0.78
VPS35-205ENST00000563984 RBM46Q8TBY0 533 aaKnown RBP10.15□□□□□ -0.78
VPS35-205ENST00000563984 ATP13A2Q9NQ11 1180 aa10.15□□□□□ -0.78
VPS35-205ENST00000563984 SPSB2Q99619 263 aa10.14□□□□□ -0.79
VPS35-205ENST00000563984 RCCD1A6NED2 376 aa10.13□□□□□ -0.79
VPS35-205ENST00000563984 CD2BP2O95400 341 aaKnown RBP10.13□□□□□ -0.79
VPS35-205ENST00000563984 FECHP22830 423 aa10.13□□□□□ -0.79
VPS35-205ENST00000563984 LORP23490 312 aaPredicted RBP10.13□□□□□ -0.79
VPS35-205ENST00000563984 TRIM47Q96LD4 638 aa10.12□□□□□ -0.79
VPS35-205ENST00000563984 OATP04181 439 aa10.11□□□□□ -0.79
VPS35-205ENST00000563984 PUS10Q3MIT2 529 aaKnown RBP10.11□□□□□ -0.79
VPS35-205ENST00000563984 SMPD1P17405 629 aa10.1□□□□□ -0.79
VPS35-205ENST00000563984 FCF1Q9Y324 198 aaKnown RBP10.1□□□□□ -0.79
VPS35-205ENST00000563984 TTC24A2A3L6 582 aaPredicted RBP10.09□□□□□ -0.79
VPS35-205ENST00000563984 FAM181BA6NEQ2 426 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 686.3 ms