RNA–Protein interactions for RNA: ENST00000561326.5

USP3-219, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-219ENST00000561326 KDM5AP29375 1690 aaKnown RBP14.49□□□□□ -0.09
USP3-219ENST00000561326 RIMS1Q86UR5 1692 aaKnown RBP14.49□□□□□ -0.09
USP3-219ENST00000561326 MADDQ8WXG6 1647 aa14.48□□□□□ -0.09
USP3-219ENST00000561326 HSPA5P11021 654 aaKnown RBP14.48□□□□□ -0.09
USP3-219ENST00000561326 CEBPAP49715 358 aaPredicted RBP14.48□□□□□ -0.09
USP3-219ENST00000561326 NLRP1Q9C000 1473 aa14.47□□□□□ -0.09
USP3-219ENST00000561326 LAMC1P11047 1609 aa14.46□□□□□ -0.09
USP3-219ENST00000561326 PLPPR3Q6T4P5 718 aa14.46□□□□□ -0.09
USP3-219ENST00000561326 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.46□□□□□ -0.09
USP3-219ENST00000561326 ZFYVE9O95405 1425 aa14.46□□□□□ -0.09
USP3-219ENST00000561326 ADGRF5Q8IZF2 1346 aa14.45□□□□□ -0.1
USP3-219ENST00000561326 HIRIP3Q9BW71 556 aaPredicted RBP14.45□□□□□ -0.1
USP3-219ENST00000561326 NEXMIFQ5QGS0 1516 aa14.45□□□□□ -0.1
USP3-219ENST00000561326 A2ML1A8K2U0 1454 aa14.44□□□□□ -0.1
USP3-219ENST00000561326 NBPF1Q3BBV0 1214 aa14.44□□□□□ -0.1
USP3-219ENST00000561326 DIEXFQ68CQ4 756 aaKnown RBP14.44□□□□□ -0.1
USP3-219ENST00000561326 GPRASP1Q5JY77 1395 aa14.44□□□□□ -0.1
USP3-219ENST00000561326 USP47Q96K76 1375 aa14.44□□□□□ -0.1
USP3-219ENST00000561326 NRXN1Q9ULB1 1477 aa14.44□□□□□ -0.1
USP3-219ENST00000561326 UBR1Q8IWV7 1749 aa14.43□□□□□ -0.1
USP3-219ENST00000561326 THEMISQ8N1K5 641 aaPredicted RBP14.42□□□□□ -0.1
USP3-219ENST00000561326 C14orf93Q9H972 538 aaKnown RBP14.42□□□□□ -0.1
USP3-219ENST00000561326 CFAP70Q5T0N1 1121 aa14.41□□□□□ -0.1
USP3-219ENST00000561326 POLR1AO95602 1720 aaPredicted RBP14.41□□□□□ -0.1
USP3-219ENST00000561326 RIMS2Q9UQ26 1411 aa14.41□□□□□ -0.1
USP3-219ENST00000561326 SLC24A1O60721 1099 aa14.4□□□□□ -0.1
USP3-219ENST00000561326 NUTM2DQ5VT03 806 aaPredicted RBP14.4□□□□□ -0.1
USP3-219ENST00000561326 PIK3C2GO75747 1445 aa14.4□□□□□ -0.1
USP3-219ENST00000561326 SETBP1Q9Y6X0 1596 aa14.39□□□□□ -0.11
USP3-219ENST00000561326 EID1Q9Y6B2 187 aa14.39□□□□□ -0.11
USP3-219ENST00000561326 ST20-MTHFSA0A0A6YYL1 179 aa14.38□□□□□ -0.11
USP3-219ENST00000561326 EIF3AQ14152 1382 aaKnown RBP14.37□□□□□ -0.11
USP3-219ENST00000561326 IQGAP1P46940 1657 aa14.37□□□□□ -0.11
USP3-219ENST00000561326 SCAF11Q99590 1463 aaKnown RBP14.37□□□□□ -0.11
USP3-219ENST00000561326 MYO3AQ8NEV4 1616 aa14.37□□□□□ -0.11
USP3-219ENST00000561326 TMEM2Q9UHN6 1383 aa14.36□□□□□ -0.11
USP3-219ENST00000561326 BCANQ96GW7 911 aa14.35□□□□□ -0.11
USP3-219ENST00000561326 PTPRMP28827 1452 aa14.35□□□□□ -0.11
USP3-219ENST00000561326 DDX10Q13206 875 aaKnown RBP14.34□□□□□ -0.11
USP3-219ENST00000561326 TXNDC2Q86VQ3 553 aa14.34□□□□□ -0.11
USP3-219ENST00000561326 CEP170BQ9Y4F5 1589 aaPredicted RBP14.33□□□□□ -0.12
USP3-219ENST00000561326 TMF1P82094 1093 aa14.32□□□□□ -0.12
USP3-219ENST00000561326 ALKQ9UM73 1620 aa14.32□□□□□ -0.12
USP3-219ENST00000561326 ZNF142P52746 1687 aaPredicted RBP14.32□□□□□ -0.12
USP3-219ENST00000561326 SLIT1O75093 1534 aa14.31□□□□□ -0.12
USP3-219ENST00000561326 CDCA8Q53HL2 280 aa14.31□□□□□ -0.12
USP3-219ENST00000561326 TMEM132EQ6IEE7 984 aa14.31□□□□□ -0.12
USP3-219ENST00000561326 WASHC2AQ641Q2 1341 aa14.31□□□□□ -0.12
USP3-219ENST00000561326 CCDC7Q96M83 1385 aa14.31□□□□□ -0.12
USP3-219ENST00000561326 TRAK1Q9UPV9 953 aa14.3□□□□□ -0.12
USP3-219ENST00000561326 ARHGAP23Q9P227 1491 aa14.3□□□□□ -0.12
USP3-219ENST00000561326 ADGRB1O14514 1584 aa14.3□□□□□ -0.12
USP3-219ENST00000561326 C11orf95C9JLR9 678 aaPredicted RBP14.29□□□□□ -0.12
USP3-219ENST00000561326 ANKLE2Q86XL3 938 aa14.29□□□□□ -0.12
USP3-219ENST00000561326 KIF7Q2M1P5 1343 aa14.29□□□□□ -0.12
USP3-219ENST00000561326 PLEKHG1Q9ULL1 1385 aa14.29□□□□□ -0.12
USP3-219ENST00000561326 LTKP29376 864 aa14.28□□□□□ -0.12
USP3-219ENST00000561326 TESK2Q96S53 571 aa14.28□□□□□ -0.12
USP3-219ENST00000561326 POLR3GLQ9BT43 218 aa14.28□□□□□ -0.12
USP3-219ENST00000561326 SENP3Q9H4L4 574 aaPredicted RBP14.28□□□□□ -0.12
USP3-219ENST00000561326 CENPJQ9HC77 1338 aaPredicted RBP14.27□□□□□ -0.12
USP3-219ENST00000561326 STK26Q9P289 416 aa14.26□□□□□ -0.13
USP3-219ENST00000561326 SETD1AO15047 1707 aaKnown RBP14.26□□□□□ -0.13
USP3-219ENST00000561326 YTHDC2Q9H6S0 1430 aaKnown RBP14.25□□□□□ -0.13
USP3-219ENST00000561326 ARHGEF28Q8N1W1 1705 aaKnown RBP14.25□□□□□ -0.13
USP3-219ENST00000561326 QRICH2Q9H0J4 1663 aa14.25□□□□□ -0.13
USP3-219ENST00000561326 NRXN3Q9Y4C0 1643 aa14.25□□□□□ -0.13
USP3-219ENST00000561326 SBNO2Q9Y2G9 1366 aa14.24□□□□□ -0.13
USP3-219ENST00000561326 KDM4FA0A1W2PPD8 638 aa14.24□□□□□ -0.13
USP3-219ENST00000561326 POGKQ9P215 609 aa14.24□□□□□ -0.13
USP3-219ENST00000561326 TBX22Q9Y458 520 aa14.24□□□□□ -0.13
USP3-219ENST00000561326 LRPPRCP42704 1394 aaKnown RBP14.23□□□□□ -0.13
USP3-219ENST00000561326 ABCC11Q96J66 1382 aa14.22□□□□□ -0.13
USP3-219ENST00000561326 SIRT1Q96EB6 747 aa14.22□□□□□ -0.13
USP3-219ENST00000561326 DIP2AQ14689 1571 aa14.22□□□□□ -0.13
USP3-219ENST00000561326 ANP32CO43423 234 aa14.21□□□□□ -0.13
USP3-219ENST00000561326 ASXL1Q8IXJ9 1541 aa14.2□□□□□ -0.14
USP3-219ENST00000561326 DLC1Q96QB1 1528 aa14.2□□□□□ -0.14
USP3-219ENST00000561326 EVC2Q86UK5 1308 aa14.2□□□□□ -0.14
USP3-219ENST00000561326 SLC26A8Q96RN1 970 aa14.2□□□□□ -0.14
USP3-219ENST00000561326 ADAMTS13Q76LX8 1427 aa14.2□□□□□ -0.14
USP3-219ENST00000561326 METP08581 1390 aa14.2□□□□□ -0.14
USP3-219ENST00000561326 DISP3Q9P2K9 1392 aa14.2□□□□□ -0.14
USP3-219ENST00000561326 MED14O60244 1454 aa14.19□□□□□ -0.14
USP3-219ENST00000561326 KNDC1Q76NI1 1749 aa14.19□□□□□ -0.14
USP3-219ENST00000561326 MIER1Q8N108 512 aa14.19□□□□□ -0.14
USP3-219ENST00000561326 PUS7Q96PZ0 661 aaKnown RBP14.19□□□□□ -0.14
USP3-219ENST00000561326 PRAM1Q96QH2 718 aa14.19□□□□□ -0.14
USP3-219ENST00000561326 PIK3R4Q99570 1358 aa14.17□□□□□ -0.14
USP3-219ENST00000561326 FAM135BQ49AJ0 1406 aa14.16□□□□□ -0.14
USP3-219ENST00000561326 SAFB2Q14151 953 aaKnown RBP eCLIP14.16□□□□□ -0.14
USP3-219ENST00000561326 TECPR2O15040 1411 aa14.15□□□□□ -0.14
USP3-219ENST00000561326 AMOTL2Q9Y2J4 779 aa14.15□□□□□ -0.14
USP3-219ENST00000561326 CHD2O14647 1828 aaKnown RBP14.15□□□□□ -0.14
USP3-219ENST00000561326 NPHP4O75161 1426 aaPredicted RBP14.14□□□□□ -0.15
USP3-219ENST00000561326 MINK1Q8N4C8 1332 aaPredicted RBP14.14□□□□□ -0.15
USP3-219ENST00000561326 WAPLQ7Z5K2 1190 aa14.13□□□□□ -0.15
USP3-219ENST00000561326 CPS1P31327 1500 aa14.13□□□□□ -0.15
USP3-219ENST00000561326 NCKAP5LQ9HCH0 1330 aa14.13□□□□□ -0.15
USP3-219ENST00000561326 SRPK2P78362 688 aaKnown RBP14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms